Wall clock time and date at job start Tue Mar 31 2020 05:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37930 * 120.07609 * 2 1 4 4 C 1.38398 * 120.14880 * 180.29654 * 3 2 1 5 5 C 1.50699 * 119.85458 * 179.69822 * 4 3 2 6 6 O 1.42891 * 109.47186 * 270.02263 * 5 4 3 7 7 C 1.38396 * 120.29278 * 359.72287 * 4 3 2 8 8 C 1.37934 * 120.14496 * 0.02562 * 7 4 3 9 9 C 1.50703 * 120.07287 * 180.02562 * 8 7 4 10 10 C 1.39619 * 120.07481 * 179.76433 * 2 1 3 11 11 C 1.47968 * 120.14642 * 359.97438 * 10 2 1 12 12 C 1.40266 * 120.34845 * 65.03707 * 11 10 2 13 13 C 1.36684 * 118.60657 * 180.26546 * 12 11 10 14 14 C 1.40873 * 119.25340 * 359.45135 * 13 12 11 15 15 C 1.40989 * 119.68077 * 180.25497 * 14 13 12 16 16 H 1.08001 * 119.99988 * 353.64327 * 15 14 13 17 17 C 1.40105 * 120.00052 * 173.64906 * 15 14 13 18 18 N 1.30710 * 120.00147 * 6.28592 * 17 15 14 19 19 Si 1.86803 * 120.00024 * 186.29350 * 17 15 14 20 20 H 1.48496 * 109.47123 * 94.98221 * 19 17 15 21 21 H 1.48498 * 109.46928 * 214.98164 * 19 17 15 22 22 H 1.48500 * 109.46884 * 334.98097 * 19 17 15 23 23 N 1.33781 * 120.63917 * 0.26640 * 14 13 12 24 24 C 1.31192 * 121.50510 * 0.02562 * 23 14 13 25 25 H 1.09003 * 109.47342 * 270.23386 * 1 2 3 26 26 H 1.08997 * 109.47542 * 30.23688 * 1 2 3 27 27 H 1.09007 * 109.47386 * 150.23538 * 1 2 3 28 28 H 1.07998 * 119.92559 * 0.04046 * 3 2 1 29 29 H 1.09004 * 109.46740 * 30.02669 * 5 4 3 30 30 H 1.08994 * 109.47026 * 150.02013 * 5 4 3 31 31 H 0.96703 * 114.00353 * 179.97438 * 6 5 4 32 32 H 1.07996 * 119.92997 * 180.02562 * 7 4 3 33 33 H 1.09003 * 109.46886 * 269.97968 * 9 8 7 34 34 H 1.09001 * 109.47144 * 29.97515 * 9 8 7 35 35 H 1.08993 * 109.47141 * 149.98004 * 9 8 7 36 36 H 1.08004 * 120.69574 * 359.97438 * 12 11 10 37 37 H 1.08005 * 120.37187 * 179.71672 * 13 12 11 38 38 H 0.96997 * 120.00640 * 179.97438 * 18 17 15 39 39 H 1.07997 * 119.65826 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1936 0.0000 4 6 3.5822 1.1954 -0.0062 5 6 4.3307 2.5033 -0.0130 6 8 4.5607 2.9134 -1.3624 7 6 4.2818 0.0013 -0.0066 8 6 3.6028 -1.1994 -0.0014 9 6 4.3663 -2.4987 -0.0014 10 6 2.2066 -1.2082 0.0050 11 6 1.4718 -2.4925 0.0108 12 6 0.6760 -2.8587 -1.0847 13 6 0.0083 -4.0505 -1.0392 14 6 0.1481 -4.8751 0.0944 15 6 -0.5322 -6.1088 0.1484 16 1 -1.2359 -6.3718 -0.6275 17 6 -0.2956 -6.9934 1.2087 18 7 0.4602 -6.6262 2.2100 19 14 -1.0600 -8.6978 1.1915 20 1 -0.0886 -9.6703 0.6295 21 1 -1.4132 -9.0959 2.5779 22 1 -2.2858 -8.6821 0.3535 23 7 0.9200 -4.4988 1.1202 24 6 1.5684 -3.3584 1.1080 25 1 -0.3634 0.0042 1.0277 26 1 -0.3634 0.8878 -0.5175 27 1 -0.3634 -0.8921 -0.5102 28 1 1.6582 2.1289 0.0007 29 1 3.7411 3.2619 0.5019 30 1 5.2860 2.3779 0.4965 31 1 5.0388 3.7501 -1.4431 32 1 5.3617 0.0095 -0.0111 33 1 4.5462 -2.8144 -1.0290 34 1 5.3198 -2.3598 0.5083 35 1 3.7851 -3.2616 0.5166 36 1 0.5888 -2.2103 -1.9440 37 1 -0.6160 -4.3585 -1.8650 38 1 0.6238 -7.2385 2.9443 39 1 2.1830 -3.0840 1.9526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244694668.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:40 Heat of formation + Delta-G solvation = -8.676650 kcal Electronic energy + Delta-G solvation = -21295.915068 eV Core-core repulsion = 18167.461868 eV Total energy + Delta-G solvation = -3128.453200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.57056 -37.98653 -36.64134 -33.90512 -33.14574 -32.48625 -30.58733 -29.65651 -27.23819 -26.57891 -26.31118 -24.41322 -21.79801 -21.35720 -20.26784 -19.64970 -17.56643 -17.48332 -15.92949 -15.79214 -15.51359 -14.67351 -14.37926 -14.15049 -13.92027 -13.38990 -13.22039 -12.86095 -12.72564 -12.55419 -12.47466 -12.23437 -12.04102 -11.89197 -11.43716 -11.31832 -11.18962 -11.04578 -10.91283 -10.65714 -10.60734 -10.31613 -10.11005 -9.93794 -9.40702 -8.40030 -8.19669 -8.11758 -7.59640 -7.36027 -6.49707 -4.58476 1.63406 1.81885 2.65910 3.02998 3.03968 3.07227 3.12146 3.87333 3.97839 4.56032 4.65291 4.99732 5.07013 5.28207 5.36735 5.42911 5.50644 5.72757 5.76842 5.89935 5.98817 6.02478 6.03197 6.09191 6.14342 6.16770 6.28011 6.51326 6.55549 6.69260 6.75821 6.80655 6.88495 6.93810 7.04973 7.21374 7.33386 7.40442 7.53612 7.57717 7.73612 7.96977 8.14439 8.56295 8.84550 10.03469 10.21127 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.036275 B = 0.003751 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.693794 B = 7463.706554 C = 7814.717684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 C -0.106 4.106 4 C -0.114 4.114 5 C 0.123 3.877 6 O -0.568 6.568 7 C -0.106 4.106 8 C -0.086 4.086 9 C -0.112 4.112 10 C 0.023 3.977 11 C -0.268 4.268 12 C -0.035 4.035 13 C -0.273 4.273 14 C 0.255 3.745 15 C -0.422 4.422 16 H 0.085 0.915 17 C 0.067 3.933 18 N -0.707 5.707 19 Si 0.908 3.092 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.260 1.260 23 N -0.487 5.487 24 C 0.151 3.849 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.374 0.626 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.275 0.725 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.329 11.527 -1.581 12.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.088 4.088 3 C -0.125 4.125 4 C -0.115 4.115 5 C 0.046 3.954 6 O -0.373 6.373 7 C -0.124 4.124 8 C -0.086 4.086 9 C -0.169 4.169 10 C 0.022 3.978 11 C -0.274 4.274 12 C -0.059 4.059 13 C -0.295 4.295 14 C 0.131 3.869 15 C -0.453 4.453 16 H 0.103 0.897 17 C -0.159 4.159 18 N -0.328 5.328 19 Si 0.732 3.268 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.184 1.184 23 N -0.198 5.198 24 C -0.016 4.016 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.131 0.869 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.220 0.780 32 H 0.131 0.869 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.112 10.269 -0.780 11.497 hybrid contribution 0.009 0.485 -0.602 0.773 sum 5.121 10.753 -1.382 11.990 Atomic orbital electron populations 1.20790 0.91394 1.02524 1.02108 1.20045 0.96009 0.92179 1.00525 1.20685 0.93117 0.97189 1.01461 1.19392 0.93548 0.93499 1.05018 1.20930 0.97709 0.93500 0.83238 1.86623 1.80092 1.43753 1.26846 1.20697 0.98891 0.91441 1.01374 1.20062 0.93389 0.94812 1.00353 1.20798 0.98853 0.95129 1.02093 1.18696 0.91456 0.92533 0.95090 1.18890 1.11154 0.97295 1.00053 1.20494 0.94437 0.95300 0.95645 1.21391 1.08670 0.98202 1.01263 1.18608 0.89251 0.92177 0.86828 1.19675 1.19968 0.99165 1.06449 0.89687 1.26131 0.94576 1.00511 0.94706 1.70117 1.23692 1.34458 1.04514 0.86295 0.80275 0.81581 0.78624 1.19368 1.20010 1.18422 1.68799 1.10301 1.14019 1.26712 1.22599 0.94690 0.89947 0.94346 0.91718 0.92732 0.90349 0.86932 0.93268 0.93246 0.78006 0.86882 0.91825 0.92610 0.90190 0.88809 0.88319 0.91418 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 9.61 36.00 0.35 -1.47 16 2 C -0.09 -1.54 5.90 -104.22 -0.62 -2.16 16 3 C -0.11 -1.68 9.34 -39.64 -0.37 -2.05 16 4 C -0.11 -1.74 5.52 -104.51 -0.58 -2.31 16 5 C 0.12 1.43 7.16 36.01 0.26 1.69 16 6 O -0.57 -6.76 13.64 -35.23 -0.48 -7.24 16 7 C -0.11 -1.68 9.34 -39.63 -0.37 -2.05 16 8 C -0.09 -1.53 5.90 -104.22 -0.62 -2.15 16 9 C -0.11 -1.88 9.61 36.01 0.35 -1.53 16 10 C 0.02 0.45 5.34 -104.88 -0.56 -0.11 16 11 C -0.27 -5.82 3.96 -104.45 -0.41 -6.24 16 12 C -0.04 -0.77 7.90 -39.38 -0.31 -1.08 16 13 C -0.27 -6.52 9.76 -39.15 -0.38 -6.90 16 14 C 0.26 6.78 6.54 -84.98 -0.56 6.23 16 15 C -0.42 -10.99 9.11 -37.84 -0.34 -11.34 16 16 H 0.09 2.07 7.86 -52.49 -0.41 1.66 16 17 C 0.07 1.66 5.49 -17.33 -0.10 1.57 16 18 N -0.71 -18.36 11.47 55.55 0.64 -17.72 16 19 Si 0.91 18.09 29.57 -169.99 -5.03 13.07 16 20 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 23 N -0.49 -13.05 7.86 -10.84 -0.09 -13.14 16 24 C 0.15 3.59 9.01 -17.13 -0.15 3.44 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 27 H 0.08 1.40 5.40 -51.92 -0.28 1.12 16 28 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.37 2.37 9.12 45.56 0.42 2.78 16 32 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 35 H 0.08 1.51 5.38 -51.93 -0.28 1.23 16 36 H 0.09 1.88 7.90 -52.48 -0.41 1.47 16 37 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 38 H 0.27 6.44 8.29 -40.82 -0.34 6.10 16 39 H 0.12 2.59 7.88 -52.49 -0.41 2.17 16 LS Contribution 327.99 15.07 4.94 4.94 Total: -1.00 -29.80 327.99 -8.74 -38.54 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -4.31 Total: 8.03 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -4.41 Total: -26.47 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.55 Total: -30.86 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.48 Total: -7.24 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.80 -8.74 -38.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244694668.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.865 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds