Wall clock time and date at job start Tue Mar 31 2020 05:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37930 * 120.07609 * 2 1 4 4 C 1.38398 * 120.14880 * 180.29654 * 3 2 1 5 5 C 1.50699 * 119.85458 * 179.69822 * 4 3 2 6 6 O 1.42891 * 109.47186 * 270.02263 * 5 4 3 7 7 C 1.38396 * 120.29278 * 359.72287 * 4 3 2 8 8 C 1.37934 * 120.14496 * 0.02562 * 7 4 3 9 9 C 1.50703 * 120.07287 * 180.02562 * 8 7 4 10 10 C 1.39619 * 120.07481 * 179.76433 * 2 1 3 11 11 C 1.47968 * 120.14642 * 359.97438 * 10 2 1 12 12 C 1.40266 * 120.34845 * 65.03707 * 11 10 2 13 13 C 1.36684 * 118.60657 * 180.26546 * 12 11 10 14 14 C 1.40873 * 119.25340 * 359.45135 * 13 12 11 15 15 C 1.40989 * 119.68077 * 180.25497 * 14 13 12 16 16 H 1.08001 * 119.99988 * 353.64327 * 15 14 13 17 17 C 1.40105 * 120.00052 * 173.64906 * 15 14 13 18 18 N 1.30710 * 120.00147 * 6.28592 * 17 15 14 19 19 Si 1.86803 * 120.00024 * 186.29350 * 17 15 14 20 20 H 1.48496 * 109.47123 * 94.98221 * 19 17 15 21 21 H 1.48498 * 109.46928 * 214.98164 * 19 17 15 22 22 H 1.48500 * 109.46884 * 334.98097 * 19 17 15 23 23 N 1.33781 * 120.63917 * 0.26640 * 14 13 12 24 24 C 1.31192 * 121.50510 * 0.02562 * 23 14 13 25 25 H 1.09003 * 109.47342 * 270.23386 * 1 2 3 26 26 H 1.08997 * 109.47542 * 30.23688 * 1 2 3 27 27 H 1.09007 * 109.47386 * 150.23538 * 1 2 3 28 28 H 1.07998 * 119.92559 * 0.04046 * 3 2 1 29 29 H 1.09004 * 109.46740 * 30.02669 * 5 4 3 30 30 H 1.08994 * 109.47026 * 150.02013 * 5 4 3 31 31 H 0.96703 * 114.00353 * 179.97438 * 6 5 4 32 32 H 1.07996 * 119.92997 * 180.02562 * 7 4 3 33 33 H 1.09003 * 109.46886 * 269.97968 * 9 8 7 34 34 H 1.09001 * 109.47144 * 29.97515 * 9 8 7 35 35 H 1.08993 * 109.47141 * 149.98004 * 9 8 7 36 36 H 1.08004 * 120.69574 * 359.97438 * 12 11 10 37 37 H 1.08005 * 120.37187 * 179.71672 * 13 12 11 38 38 H 0.96997 * 120.00640 * 179.97438 * 18 17 15 39 39 H 1.07997 * 119.65826 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1936 0.0000 4 6 3.5822 1.1954 -0.0062 5 6 4.3307 2.5033 -0.0130 6 8 4.5607 2.9134 -1.3624 7 6 4.2818 0.0013 -0.0066 8 6 3.6028 -1.1994 -0.0014 9 6 4.3663 -2.4987 -0.0014 10 6 2.2066 -1.2082 0.0050 11 6 1.4718 -2.4925 0.0108 12 6 0.6760 -2.8587 -1.0847 13 6 0.0083 -4.0505 -1.0392 14 6 0.1481 -4.8751 0.0944 15 6 -0.5322 -6.1088 0.1484 16 1 -1.2359 -6.3718 -0.6275 17 6 -0.2956 -6.9934 1.2087 18 7 0.4602 -6.6262 2.2100 19 14 -1.0600 -8.6978 1.1915 20 1 -0.0886 -9.6703 0.6295 21 1 -1.4132 -9.0959 2.5779 22 1 -2.2858 -8.6821 0.3535 23 7 0.9200 -4.4988 1.1202 24 6 1.5684 -3.3584 1.1080 25 1 -0.3634 0.0042 1.0277 26 1 -0.3634 0.8878 -0.5175 27 1 -0.3634 -0.8921 -0.5102 28 1 1.6582 2.1289 0.0007 29 1 3.7411 3.2619 0.5019 30 1 5.2860 2.3779 0.4965 31 1 5.0388 3.7501 -1.4431 32 1 5.3617 0.0095 -0.0111 33 1 4.5462 -2.8144 -1.0290 34 1 5.3198 -2.3598 0.5083 35 1 3.7851 -3.2616 0.5166 36 1 0.5888 -2.2103 -1.9440 37 1 -0.6160 -4.3585 -1.8650 38 1 0.6238 -7.2385 2.9443 39 1 2.1830 -3.0840 1.9526 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244694668.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:40 Heat of formation + Delta-G solvation = -26.334428 kcal Electronic energy + Delta-G solvation = -21296.680767 eV Core-core repulsion = 18167.461868 eV Total energy + Delta-G solvation = -3129.218898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99548 -39.64022 -37.61599 -35.65058 -34.47033 -33.93231 -32.43450 -31.31561 -28.66786 -27.97836 -27.58447 -25.89577 -23.65846 -23.01501 -21.56667 -20.99658 -19.43649 -18.30295 -17.54545 -17.29036 -16.89354 -16.12127 -15.99399 -15.72095 -14.91844 -14.86371 -14.63165 -14.35056 -14.04368 -14.02829 -13.92337 -13.78601 -13.60395 -13.21728 -12.95379 -12.84363 -12.73707 -12.58988 -12.48194 -12.16004 -11.89503 -11.82512 -11.55448 -11.18260 -10.91369 -10.17899 -9.83486 -9.47479 -9.41569 -9.03107 -8.32698 -6.50755 0.28897 0.52904 0.89694 1.17929 1.40210 1.52398 1.54789 2.21240 2.70722 2.83844 3.64270 3.85626 3.94502 3.97540 4.09151 4.16865 4.18562 4.38164 4.40069 4.44076 4.59438 4.60122 4.74183 4.76971 4.77678 4.80925 4.87623 4.93514 5.01182 5.11223 5.17326 5.25319 5.42678 5.47747 5.58818 5.65514 5.68646 5.83740 5.96698 6.11575 6.19024 6.27125 6.69569 6.93491 6.98021 8.15599 8.40733 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.036275 B = 0.003751 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.693794 B = 7463.706554 C = 7814.717684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.095 4.095 3 C -0.110 4.110 4 C -0.111 4.111 5 C 0.124 3.876 6 O -0.590 6.590 7 C -0.110 4.110 8 C -0.095 4.095 9 C -0.109 4.109 10 C -0.016 4.016 11 C -0.239 4.239 12 C -0.036 4.036 13 C -0.285 4.285 14 C 0.224 3.776 15 C -0.461 4.461 16 H 0.090 0.910 17 C 0.024 3.976 18 N -0.751 5.751 19 Si 0.988 3.012 20 H -0.264 1.264 21 H -0.267 1.267 22 H -0.254 1.254 23 N -0.519 5.519 24 C 0.133 3.867 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.139 0.861 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.398 0.602 32 H 0.137 0.863 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.280 0.720 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.234 13.680 -2.103 15.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.127 4.127 4 C -0.111 4.111 5 C 0.047 3.953 6 O -0.399 6.399 7 C -0.128 4.128 8 C -0.095 4.095 9 C -0.166 4.166 10 C -0.017 4.017 11 C -0.244 4.244 12 C -0.060 4.060 13 C -0.307 4.307 14 C 0.100 3.900 15 C -0.492 4.492 16 H 0.109 0.891 17 C -0.199 4.199 18 N -0.372 5.372 19 Si 0.808 3.192 20 H -0.189 1.189 21 H -0.192 1.192 22 H -0.177 1.177 23 N -0.232 5.232 24 C -0.032 4.032 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.156 0.844 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.249 0.751 32 H 0.155 0.845 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.091 0.909 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.042 12.474 -1.308 13.922 hybrid contribution -0.131 0.119 -0.492 0.523 sum 5.910 12.593 -1.800 14.027 Atomic orbital electron populations 1.20782 0.90912 1.02815 1.02148 1.20208 0.96572 0.92320 1.00418 1.20991 0.93747 0.97342 1.00668 1.19931 0.93715 0.95157 1.02273 1.20963 0.98663 0.92016 0.83614 1.86539 1.80815 1.45718 1.26858 1.20982 1.00190 0.90897 1.00709 1.20191 0.92890 0.95947 1.00512 1.20763 0.99651 0.94187 1.01995 1.18687 0.92330 0.91878 0.98771 1.19066 1.09219 0.97659 0.98502 1.20753 0.93942 0.94896 0.96434 1.21558 1.09381 0.98734 1.01054 1.19010 0.90025 0.93238 0.87721 1.20005 1.21307 1.00088 1.07818 0.89148 1.27043 0.94654 1.04462 0.93724 1.70213 1.25353 1.36243 1.05415 0.85109 0.79345 0.75851 0.78891 1.18863 1.19188 1.17708 1.68715 1.11289 1.15517 1.27640 1.22783 0.94962 0.90027 0.95448 0.91822 0.89946 0.92490 0.84368 0.91106 0.91184 0.75135 0.84483 0.91873 0.89913 0.93032 0.86667 0.87227 0.90894 0.86098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.45 9.61 71.23 0.68 -2.77 16 2 C -0.10 -3.21 5.90 -19.60 -0.12 -3.32 16 3 C -0.11 -3.12 9.34 22.23 0.21 -2.92 16 4 C -0.11 -2.97 5.52 -19.79 -0.11 -3.08 16 5 C 0.12 2.31 7.16 71.24 0.51 2.82 16 6 O -0.59 -11.56 13.64 -148.98 -2.03 -13.59 16 7 C -0.11 -3.18 9.34 22.24 0.21 -2.98 16 8 C -0.10 -3.28 5.90 -19.60 -0.12 -3.40 16 9 C -0.11 -3.63 9.61 71.24 0.68 -2.95 16 10 C -0.02 -0.61 5.34 -20.03 -0.11 -0.71 16 11 C -0.24 -10.61 3.96 -19.75 -0.08 -10.69 16 12 C -0.04 -1.64 7.90 22.40 0.18 -1.46 16 13 C -0.28 -14.10 9.76 22.55 0.22 -13.87 16 14 C 0.22 12.51 6.54 40.17 0.26 12.77 16 15 C -0.46 -25.07 9.11 23.40 0.21 -24.86 16 16 H 0.09 4.58 7.86 -2.91 -0.02 4.55 16 17 C 0.02 1.20 5.49 85.31 0.47 1.67 16 18 N -0.75 -40.64 11.47 21.85 0.25 -40.39 16 19 Si 0.99 37.94 29.57 68.60 2.03 39.97 16 20 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 21 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 22 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 23 N -0.52 -29.31 7.86 -188.22 -1.48 -30.79 16 24 C 0.13 6.60 9.01 85.24 0.77 7.37 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.08 2.07 8.09 -2.39 -0.02 2.06 16 27 H 0.06 2.02 5.40 -2.38 -0.01 2.01 16 28 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 29 H 0.07 1.03 8.08 -2.38 -0.02 1.01 16 30 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 31 H 0.40 3.34 9.12 -74.06 -0.68 2.67 16 32 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.08 2.23 8.09 -2.39 -0.02 2.21 16 35 H 0.05 2.00 5.38 -2.39 -0.01 1.99 16 36 H 0.12 4.60 7.90 -2.91 -0.02 4.58 16 37 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 38 H 0.28 13.66 8.29 -92.71 -0.77 12.89 16 39 H 0.12 5.68 7.88 -2.91 -0.02 5.66 16 Total: -1.00 -67.04 327.99 3.04 -64.00 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: 0.40 Total: 29.16 kcal Atomic # 6 Polarization: -52.25 SS G_CDS: 3.88 Total: -48.37 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -1.23 Total: -71.17 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -2.03 Total: -13.59 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -67.04 3.04 -64.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244694668.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.664 kcal (2) G-P(sol) polarization free energy of solvation -67.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds