Wall clock time and date at job start Tue Mar 31 2020 05:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38013 * 119.94463 * 2 1 4 4 C 1.39343 * 119.87928 * 179.97438 * 3 2 1 5 5 C 1.48387 * 120.11885 * 179.97438 * 4 3 2 6 6 C 1.40036 * 120.82358 * 359.97438 * 5 4 3 7 7 C 1.38511 * 119.42214 * 180.02562 * 6 5 4 8 8 N 1.31478 * 121.14587 * 0.03008 * 7 6 5 9 9 C 1.33647 * 121.79298 * 359.96742 * 8 7 6 10 10 C 1.41426 * 119.77696 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99912 * 187.07025 * 10 9 8 12 12 C 1.40033 * 119.99947 * 7.07167 * 10 9 8 13 13 N 1.30741 * 120.00144 * 182.56910 * 12 10 9 14 14 Si 1.86809 * 120.00169 * 2.56807 * 12 10 9 15 15 H 1.48499 * 109.47093 * 179.97438 * 14 12 10 16 16 H 1.48495 * 109.46992 * 300.00230 * 14 12 10 17 17 H 1.48506 * 109.46797 * 59.99784 * 14 12 10 18 18 C 1.39306 * 120.81879 * 180.25995 * 5 4 3 19 19 C 1.39339 * 119.75571 * 0.25273 * 4 3 2 20 20 C 1.38019 * 119.87971 * 359.51688 * 19 4 3 21 21 C 1.50698 * 119.94230 * 180.23266 * 20 19 4 22 22 C 1.38323 * 120.11626 * 0.48199 * 20 19 4 23 23 C 1.50703 * 119.87512 * 179.72429 * 22 20 19 24 24 O 1.42908 * 109.46963 * 270.02743 * 23 22 20 25 25 H 1.09000 * 109.46670 * 89.99563 * 1 2 3 26 26 H 1.08995 * 109.47264 * 210.00362 * 1 2 3 27 27 H 1.09002 * 109.46807 * 329.99835 * 1 2 3 28 28 H 1.08001 * 120.05628 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.29021 * 359.97438 * 6 5 4 30 30 H 1.07996 * 119.42543 * 179.97438 * 7 6 5 31 31 H 0.96999 * 119.99741 * 354.84870 * 13 12 10 32 32 H 1.08008 * 120.58453 * 359.97438 * 18 5 4 33 33 H 1.08004 * 120.05826 * 179.74433 * 19 4 3 34 34 H 1.09005 * 109.46927 * 270.25603 * 21 20 19 35 35 H 1.09009 * 109.47165 * 30.25058 * 21 20 19 36 36 H 1.08994 * 109.47307 * 150.25450 * 21 20 19 37 37 H 1.08997 * 109.46986 * 30.02117 * 23 22 20 38 38 H 1.08998 * 109.47595 * 150.02431 * 23 22 20 39 39 H 0.96702 * 113.99482 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1959 0.0000 4 6 3.5894 1.1943 0.0005 5 6 4.3354 2.4770 0.0000 6 6 3.6567 3.7019 -0.0017 7 6 4.3822 4.8818 -0.0027 8 7 5.6969 4.8717 -0.0028 9 6 6.3923 3.7304 -0.0012 10 6 7.8060 3.7693 -0.0019 11 1 8.3713 2.8561 -0.1158 12 6 8.4729 4.9918 0.1451 13 7 9.7786 5.0345 0.0941 14 14 7.4968 6.5618 0.4140 15 1 8.4305 7.7098 0.5392 16 1 6.5897 6.7845 -0.7404 17 1 6.6945 6.4389 1.6575 18 6 5.7284 2.4924 -0.0049 19 6 4.2795 -0.0161 -0.0043 20 6 3.5805 -1.2062 0.0006 21 6 4.3255 -2.5162 0.0007 22 6 2.1973 -1.1987 0.0001 23 6 1.4395 -2.5013 -0.0009 24 8 1.2010 -2.9126 -1.3486 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6559 2.1312 -0.0004 29 1 2.5770 3.7263 -0.0029 30 1 3.8588 5.8264 -0.0044 31 1 10.2886 4.2119 0.0296 32 1 6.2882 1.5687 -0.0080 33 1 5.3595 -0.0231 -0.0080 34 1 4.5056 -2.8318 -1.0270 35 1 5.2787 -2.3920 0.5149 36 1 3.7314 -3.2720 0.5141 37 1 2.0258 -3.2631 0.5130 38 1 0.4872 -2.3682 0.5123 39 1 0.7160 -3.7457 -1.4255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244704202.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:48 Heat of formation + Delta-G solvation = -20.825327 kcal Electronic energy + Delta-G solvation = -21133.874414 eV Core-core repulsion = 18004.894409 eV Total energy + Delta-G solvation = -3128.980006 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.94270 -38.52752 -36.69678 -34.08856 -33.60173 -33.23755 -30.49689 -30.04128 -28.00370 -26.85063 -25.59881 -25.23906 -22.49085 -21.52367 -20.28068 -19.79164 -18.09301 -17.65258 -16.43229 -16.32015 -15.36517 -14.83735 -14.67983 -14.06868 -13.90767 -13.72607 -13.46198 -13.18222 -13.07898 -12.98285 -12.80801 -12.64707 -12.41335 -12.12640 -11.94679 -11.91488 -11.64581 -11.18803 -10.70461 -10.65285 -10.42582 -10.11236 -10.02141 -9.62289 -9.39346 -9.29166 -8.39202 -8.02779 -7.73528 -7.72009 -7.26601 -4.82895 1.10970 1.56491 2.51244 2.65351 3.61644 3.64376 3.92714 4.03301 4.39385 4.44808 4.65560 4.73795 4.78536 4.93207 4.98988 5.09389 5.19098 5.40169 5.46737 5.49460 5.58366 5.64223 5.66608 5.70015 5.74623 5.82577 5.85028 6.08752 6.18862 6.33158 6.43452 6.44690 6.58613 6.73916 6.78670 6.94609 7.10249 7.23610 7.37391 7.42721 7.43983 7.63320 8.02810 8.23852 8.58853 9.42964 9.97442 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.029641 B = 0.003977 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.424258 B = 7038.379787 C = 7877.710828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.066 4.066 3 C -0.119 4.119 4 C -0.010 4.010 5 C 0.012 3.988 6 C -0.303 4.303 7 C 0.152 3.848 8 N -0.574 5.574 9 C 0.249 3.751 10 C -0.472 4.472 11 H 0.081 0.919 12 C 0.043 3.957 13 N -0.803 5.803 14 Si 1.156 2.844 15 H -0.333 1.333 16 H -0.279 1.279 17 H -0.293 1.293 18 C -0.239 4.239 19 C -0.119 4.119 20 C -0.064 4.064 21 C -0.115 4.115 22 C -0.109 4.109 23 C 0.115 3.885 24 O -0.564 6.564 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.127 0.873 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.283 0.717 32 H 0.108 0.892 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.355 -13.434 0.950 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.066 4.066 3 C -0.137 4.137 4 C -0.010 4.010 5 C 0.006 3.994 6 C -0.326 4.326 7 C -0.009 4.009 8 N -0.293 5.293 9 C 0.127 3.873 10 C -0.504 4.504 11 H 0.099 0.901 12 C -0.178 4.178 13 N -0.424 5.424 14 Si 0.991 3.009 15 H -0.266 1.266 16 H -0.206 1.206 17 H -0.221 1.221 18 C -0.261 4.261 19 C -0.138 4.138 20 C -0.064 4.064 21 C -0.171 4.171 22 C -0.110 4.110 23 C 0.038 3.962 24 O -0.369 6.369 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.145 0.855 29 H 0.125 0.875 30 H 0.147 0.853 31 H 0.094 0.906 32 H 0.126 0.874 33 H 0.145 0.855 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -14.266 -10.613 0.967 17.807 hybrid contribution -0.754 -3.188 -0.075 3.277 sum -15.019 -13.802 0.891 20.417 Atomic orbital electron populations 1.20825 0.91432 1.02324 1.02384 1.19604 0.95720 0.92352 0.98930 1.21099 0.93431 0.97420 1.01772 1.19003 0.92805 0.92733 0.96461 1.18695 0.92965 0.91059 0.96653 1.21183 0.98681 0.92422 1.20297 1.22043 0.90063 0.96582 0.92177 1.66507 1.08144 1.29037 1.25611 1.18593 0.93913 0.86812 0.88024 1.20800 0.90292 0.97027 1.42234 0.90056 1.27857 0.95794 1.05476 0.88685 1.70656 1.07333 1.33342 1.31098 0.81801 0.70579 0.69677 0.78884 1.26644 1.20638 1.22141 1.21756 0.92669 0.98245 1.13455 1.21166 1.00178 0.90990 1.01421 1.19614 0.92833 0.95254 0.98694 1.20840 0.99746 0.94054 1.02457 1.19175 0.92830 0.93428 1.05520 1.21021 0.97828 0.93508 0.83808 1.86630 1.79566 1.44207 1.26463 0.91056 0.91672 0.91619 0.85538 0.87518 0.85282 0.90597 0.87385 0.85496 0.90998 0.91524 0.91646 0.92784 0.92803 0.77955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.60 36.01 0.35 -0.86 16 2 C -0.07 -0.94 5.87 -104.67 -0.61 -1.55 16 3 C -0.12 -1.93 9.10 -39.25 -0.36 -2.29 16 4 C -0.01 -0.18 5.88 -104.90 -0.62 -0.80 16 5 C 0.01 0.25 5.91 -104.65 -0.62 -0.36 16 6 C -0.30 -6.25 9.52 -38.81 -0.37 -6.62 16 7 C 0.15 3.35 11.17 -17.60 -0.20 3.15 16 8 N -0.57 -14.68 4.54 -11.20 -0.05 -14.73 16 9 C 0.25 6.55 6.39 -85.02 -0.54 6.01 16 10 C -0.47 -12.94 9.58 -37.70 -0.36 -13.30 16 11 H 0.08 2.21 8.05 -52.49 -0.42 1.79 16 12 C 0.04 1.18 5.52 -17.34 -0.10 1.09 16 13 N -0.80 -22.00 13.65 55.55 0.76 -21.24 16 14 Si 1.16 28.65 25.56 -169.99 -4.34 24.31 16 15 H -0.33 -8.14 7.11 56.52 0.40 -7.73 16 16 H -0.28 -6.87 6.67 56.52 0.38 -6.50 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 C -0.24 -5.65 9.22 -38.34 -0.35 -6.01 16 19 C -0.12 -2.04 9.10 -39.25 -0.36 -2.40 16 20 C -0.06 -0.94 5.87 -104.67 -0.61 -1.56 16 21 C -0.11 -1.32 9.60 36.00 0.35 -0.98 16 22 C -0.11 -1.52 5.51 -104.56 -0.58 -2.10 16 23 C 0.12 1.19 6.35 36.01 0.23 1.41 16 24 O -0.56 -5.92 13.64 -35.23 -0.48 -6.40 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.58 5.93 -51.93 -0.31 0.28 16 27 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 28 H 0.13 1.89 6.29 -52.49 -0.33 1.56 16 29 H 0.11 1.87 6.32 -52.49 -0.33 1.54 16 30 H 0.13 2.40 8.06 -52.49 -0.42 1.97 16 31 H 0.28 7.39 8.72 -40.82 -0.36 7.04 16 32 H 0.11 2.39 6.33 -52.48 -0.33 2.06 16 33 H 0.13 2.14 6.29 -52.48 -0.33 1.81 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.72 8.09 -51.92 -0.42 0.30 16 36 H 0.06 0.63 5.93 -51.93 -0.31 0.32 16 37 H 0.05 0.47 5.93 -51.93 -0.31 0.17 16 38 H 0.05 0.46 5.93 -51.93 -0.31 0.15 16 39 H 0.37 1.94 9.12 45.56 0.42 2.35 16 LS Contribution 317.81 15.07 4.79 4.79 Total: -1.00 -31.34 317.81 -7.93 -39.27 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -3.85 Total: 1.16 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -4.76 Total: -27.15 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.71 Total: -35.97 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.48 Total: -6.40 kcal Atomic # 14 Polarization: 28.65 SS G_CDS: -4.34 Total: 24.31 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.34 -7.93 -39.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244704202.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.447 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds