Wall clock time and date at job start Tue Mar 31 2020 05:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37914 * 119.92598 * 2 1 4 4 C 1.39684 * 119.84839 * 180.02562 * 3 2 1 5 5 C 1.47819 * 120.15586 * 179.97438 * 4 3 2 6 6 C 1.39684 * 120.64615 * 310.26912 * 5 4 3 7 7 C 1.38391 * 118.46980 * 180.26684 * 6 5 4 8 8 C 1.39053 * 119.72745 * 359.72251 * 7 6 5 9 9 N 1.31274 * 121.34021 * 0.02562 * 8 7 6 10 10 C 1.33700 * 121.63675 * 359.97438 * 9 8 7 11 11 C 1.40818 * 119.93731 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99877 * 170.84129 * 11 10 9 13 13 C 1.40151 * 120.00536 * 350.84215 * 11 10 9 14 14 N 1.30698 * 119.99488 * 8.61262 * 13 11 10 15 15 Si 1.86799 * 120.00377 * 188.61571 * 13 11 10 16 16 H 1.48498 * 109.46842 * 265.12798 * 15 13 11 17 17 H 1.48496 * 109.46878 * 25.12515 * 15 13 11 18 18 H 1.48494 * 109.47024 * 145.12746 * 15 13 11 19 19 C 1.39696 * 119.69449 * 0.25113 * 4 3 2 20 20 C 1.37912 * 119.84040 * 359.49572 * 19 4 3 21 21 C 1.50705 * 119.92143 * 180.25320 * 20 19 4 22 22 C 1.38407 * 119.92000 * 180.02562 * 2 1 3 23 23 C 1.50698 * 119.84869 * 359.97438 * 22 2 1 24 24 O 1.42903 * 109.46902 * 89.99928 * 23 22 2 25 25 H 1.09002 * 109.47123 * 89.99368 * 1 2 3 26 26 H 1.09002 * 109.47489 * 209.99904 * 1 2 3 27 27 H 1.09002 * 109.46990 * 329.99962 * 1 2 3 28 28 H 1.08000 * 120.07742 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.76449 * 359.96526 * 6 5 4 30 30 H 1.08002 * 120.13127 * 179.70371 * 7 6 5 31 31 H 1.08008 * 119.33229 * 180.02562 * 8 7 6 32 32 H 0.97004 * 119.99701 * 179.97438 * 14 13 11 33 33 H 1.07993 * 120.07539 * 179.72751 * 19 4 3 34 34 H 1.08999 * 109.46967 * 270.25568 * 21 20 19 35 35 H 1.08994 * 109.47236 * 30.25234 * 21 20 19 36 36 H 1.09000 * 109.47245 * 150.25571 * 21 20 19 37 37 H 1.08999 * 109.47225 * 209.99924 * 23 22 2 38 38 H 1.09003 * 109.46921 * 330.00188 * 23 22 2 39 39 H 0.96703 * 113.99358 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1953 0.0000 4 6 3.5919 1.1934 -0.0005 5 6 4.3362 2.4705 -0.0011 6 6 4.0232 3.4766 -0.9182 7 6 4.7526 4.6521 -0.8823 8 6 5.7651 4.8069 0.0582 9 7 6.0482 3.8573 0.9192 10 6 5.3783 2.7003 0.9327 11 6 5.7116 1.7062 1.8727 12 1 5.0816 0.8362 1.9849 13 6 6.8609 1.8456 2.6625 14 7 7.5299 2.9683 2.6503 15 14 7.4367 0.4268 3.7326 16 1 6.8994 0.5937 5.1069 17 1 6.9474 -0.8538 3.1619 18 1 8.9208 0.4129 3.7797 19 6 4.2822 -0.0211 -0.0064 20 6 3.5814 -1.2088 -0.0011 21 6 4.3244 -2.5200 -0.0016 22 6 2.1973 -1.1996 -0.0005 23 6 1.4386 -2.5016 -0.0005 24 8 1.1983 -2.9128 -1.3479 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6551 2.1306 0.0004 29 1 3.2335 3.3383 -1.6418 30 1 4.5365 5.4458 -1.5821 31 1 6.3301 5.7272 0.0808 32 1 8.3252 3.0650 3.1973 33 1 5.3621 -0.0297 -0.0113 34 1 4.5031 -2.8359 -1.0294 35 1 5.2780 -2.3975 0.5118 36 1 3.7294 -3.2750 0.5123 37 1 2.0248 -3.2638 0.5129 38 1 0.4869 -2.3675 0.5137 39 1 0.7132 -3.7459 -1.4241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244704928.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:38 Heat of formation + Delta-G solvation = -4.373422 kcal Electronic energy + Delta-G solvation = -21764.747212 eV Core-core repulsion = 18636.480614 eV Total energy + Delta-G solvation = -3128.266598 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.47221 -38.04542 -36.33102 -33.76020 -33.14897 -32.86422 -30.38684 -29.33571 -27.65708 -26.35805 -25.78501 -24.76819 -21.92060 -21.35908 -20.09827 -19.26039 -17.54332 -17.38613 -15.97847 -15.57439 -15.50867 -14.68858 -14.31042 -14.18502 -13.60490 -13.43531 -13.19560 -12.87565 -12.81524 -12.48726 -12.41023 -12.28214 -12.16701 -11.76156 -11.58840 -11.28441 -11.18072 -11.06462 -10.99266 -10.56770 -10.44674 -10.23967 -9.86783 -9.79316 -9.40378 -8.51229 -8.00844 -7.89560 -7.64302 -7.28123 -6.52004 -4.56876 1.75582 2.04422 2.70703 2.97611 3.03930 3.06975 3.17865 3.87889 4.24430 4.66324 4.73739 5.07444 5.15572 5.35223 5.40421 5.46940 5.57423 5.73312 5.82388 5.86792 5.93556 6.01001 6.06484 6.08100 6.13768 6.22105 6.28554 6.32125 6.49851 6.71237 6.75838 6.84881 6.98330 7.09580 7.19448 7.28504 7.35362 7.52897 7.66568 7.70741 7.77459 7.98743 8.19178 8.56076 8.85467 10.01419 10.20276 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.006455 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.845460 B = 4336.442166 C = 5752.844855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.067 4.067 3 C -0.139 4.139 4 C 0.042 3.958 5 C -0.237 4.237 6 C -0.032 4.032 7 C -0.320 4.320 8 C 0.132 3.868 9 N -0.484 5.484 10 C 0.269 3.731 11 C -0.419 4.419 12 H 0.093 0.907 13 C 0.069 3.931 14 N -0.709 5.709 15 Si 0.902 3.098 16 H -0.268 1.268 17 H -0.257 1.257 18 H -0.274 1.274 19 C -0.113 4.113 20 C -0.068 4.068 21 C -0.112 4.112 22 C -0.126 4.126 23 C 0.118 3.882 24 O -0.565 6.565 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.275 0.725 33 H 0.128 0.872 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.133 -9.153 -2.351 12.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.068 4.068 3 C -0.158 4.158 4 C 0.041 3.959 5 C -0.242 4.242 6 C -0.057 4.057 7 C -0.344 4.344 8 C -0.036 4.036 9 N -0.195 5.195 10 C 0.146 3.854 11 C -0.449 4.449 12 H 0.111 0.889 13 C -0.158 4.158 14 N -0.329 5.329 15 Si 0.726 3.274 16 H -0.193 1.193 17 H -0.181 1.181 18 H -0.199 1.199 19 C -0.132 4.132 20 C -0.068 4.068 21 C -0.169 4.169 22 C -0.126 4.126 23 C 0.042 3.958 24 O -0.370 6.370 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.132 0.868 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.146 0.854 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -6.935 -8.409 -1.725 11.036 hybrid contribution -0.654 -0.966 -0.042 1.168 sum -7.590 -9.375 -1.767 12.191 Atomic orbital electron populations 1.20784 0.92127 1.01910 1.01851 1.19474 0.95138 0.92552 0.99589 1.21081 0.93699 0.96663 1.04324 1.18725 0.91776 0.92778 0.92644 1.19385 1.05550 0.94643 1.04641 1.20902 0.96335 0.92617 0.95819 1.21226 1.06007 0.99722 1.07400 1.22606 0.93174 0.97236 0.90604 1.68758 1.27880 1.00562 1.22287 1.18524 0.86384 0.90296 0.90206 1.19755 1.06344 1.04377 1.14430 0.88933 1.26146 0.96563 0.96413 0.96638 1.70120 1.11858 1.23210 1.27704 0.86376 0.78564 0.82090 0.80419 1.19323 1.18068 1.19899 1.21245 1.00291 0.90686 1.00930 1.19569 0.92700 0.95188 0.99316 1.20807 0.99824 0.94345 1.01907 1.19016 0.92773 0.92935 1.07895 1.21000 0.97592 0.93851 0.83402 1.86643 1.79448 1.43879 1.26981 0.91552 0.92000 0.92009 0.86777 0.88534 0.88666 0.86360 0.91417 0.85420 0.91501 0.91631 0.92067 0.93094 0.93207 0.78434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 9.60 36.01 0.35 -1.14 16 2 C -0.07 -1.17 5.87 -104.68 -0.61 -1.78 16 3 C -0.14 -2.73 9.20 -39.16 -0.36 -3.09 16 4 C 0.04 0.91 4.97 -104.89 -0.52 0.39 16 5 C -0.24 -5.78 5.54 -104.08 -0.58 -6.36 16 6 C -0.03 -0.74 9.66 -38.99 -0.38 -1.11 16 7 C -0.32 -7.17 10.10 -39.22 -0.40 -7.57 16 8 C 0.13 3.19 11.17 -17.49 -0.20 2.99 16 9 N -0.48 -13.21 7.91 -10.91 -0.09 -13.29 16 10 C 0.27 7.24 6.54 -84.71 -0.55 6.68 16 11 C -0.42 -10.94 7.73 -37.89 -0.29 -11.23 16 12 H 0.09 2.33 5.69 -52.49 -0.30 2.03 16 13 C 0.07 1.72 5.48 -17.32 -0.09 1.63 16 14 N -0.71 -18.50 11.52 55.56 0.64 -17.86 16 15 Si 0.90 18.31 29.57 -169.99 -5.03 13.28 16 16 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 17 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 18 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 19 C -0.11 -2.37 7.32 -39.16 -0.29 -2.65 16 20 C -0.07 -1.23 5.87 -104.68 -0.61 -1.84 16 21 C -0.11 -1.66 9.59 36.01 0.35 -1.32 16 22 C -0.13 -2.15 5.52 -104.50 -0.58 -2.72 16 23 C 0.12 1.55 6.34 36.00 0.23 1.78 16 24 O -0.56 -7.24 13.64 -35.23 -0.48 -7.72 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.73 5.93 -51.93 -0.31 0.42 16 27 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 28 H 0.11 2.12 8.05 -52.49 -0.42 1.70 16 29 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 30 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.12 2.52 8.06 -52.48 -0.42 2.09 16 32 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 33 H 0.13 2.77 7.32 -52.49 -0.38 2.38 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.06 0.78 5.93 -51.93 -0.31 0.47 16 37 H 0.05 0.60 5.93 -51.93 -0.31 0.29 16 38 H 0.05 0.57 5.93 -51.93 -0.31 0.26 16 39 H 0.37 2.71 9.12 45.56 0.42 3.13 16 LS Contribution 323.27 15.07 4.87 4.87 Total: -1.00 -30.45 323.27 -8.63 -39.08 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -4.01 Total: 8.99 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -4.54 Total: -27.36 kcal Atomic # 7 Polarization: -31.71 SS G_CDS: 0.55 Total: -31.15 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.48 Total: -7.72 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.45 -8.63 -39.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244704928.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.710 kcal (2) G-P(sol) polarization free energy of solvation -30.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds