Wall clock time and date at job start Tue Mar 31 2020 05:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37914 * 119.92598 * 2 1 4 4 C 1.39684 * 119.84839 * 180.02562 * 3 2 1 5 5 C 1.47819 * 120.15586 * 179.97438 * 4 3 2 6 6 C 1.39684 * 120.64615 * 310.26912 * 5 4 3 7 7 C 1.38391 * 118.46980 * 180.26684 * 6 5 4 8 8 C 1.39053 * 119.72745 * 359.72251 * 7 6 5 9 9 N 1.31274 * 121.34021 * 0.02562 * 8 7 6 10 10 C 1.33700 * 121.63675 * 359.97438 * 9 8 7 11 11 C 1.40818 * 119.93731 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99877 * 170.84129 * 11 10 9 13 13 C 1.40151 * 120.00536 * 350.84215 * 11 10 9 14 14 N 1.30698 * 119.99488 * 8.61262 * 13 11 10 15 15 Si 1.86799 * 120.00377 * 188.61571 * 13 11 10 16 16 H 1.48498 * 109.46842 * 265.12798 * 15 13 11 17 17 H 1.48496 * 109.46878 * 25.12515 * 15 13 11 18 18 H 1.48494 * 109.47024 * 145.12746 * 15 13 11 19 19 C 1.39696 * 119.69449 * 0.25113 * 4 3 2 20 20 C 1.37912 * 119.84040 * 359.49572 * 19 4 3 21 21 C 1.50705 * 119.92143 * 180.25320 * 20 19 4 22 22 C 1.38407 * 119.92000 * 180.02562 * 2 1 3 23 23 C 1.50698 * 119.84869 * 359.97438 * 22 2 1 24 24 O 1.42903 * 109.46902 * 89.99928 * 23 22 2 25 25 H 1.09002 * 109.47123 * 89.99368 * 1 2 3 26 26 H 1.09002 * 109.47489 * 209.99904 * 1 2 3 27 27 H 1.09002 * 109.46990 * 329.99962 * 1 2 3 28 28 H 1.08000 * 120.07742 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.76449 * 359.96526 * 6 5 4 30 30 H 1.08002 * 120.13127 * 179.70371 * 7 6 5 31 31 H 1.08008 * 119.33229 * 180.02562 * 8 7 6 32 32 H 0.97004 * 119.99701 * 179.97438 * 14 13 11 33 33 H 1.07993 * 120.07539 * 179.72751 * 19 4 3 34 34 H 1.08999 * 109.46967 * 270.25568 * 21 20 19 35 35 H 1.08994 * 109.47236 * 30.25234 * 21 20 19 36 36 H 1.09000 * 109.47245 * 150.25571 * 21 20 19 37 37 H 1.08999 * 109.47225 * 209.99924 * 23 22 2 38 38 H 1.09003 * 109.46921 * 330.00188 * 23 22 2 39 39 H 0.96703 * 113.99358 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1953 0.0000 4 6 3.5919 1.1934 -0.0005 5 6 4.3362 2.4705 -0.0011 6 6 4.0232 3.4766 -0.9182 7 6 4.7526 4.6521 -0.8823 8 6 5.7651 4.8069 0.0582 9 7 6.0482 3.8573 0.9192 10 6 5.3783 2.7003 0.9327 11 6 5.7116 1.7062 1.8727 12 1 5.0816 0.8362 1.9849 13 6 6.8609 1.8456 2.6625 14 7 7.5299 2.9683 2.6503 15 14 7.4367 0.4268 3.7326 16 1 6.8994 0.5937 5.1069 17 1 6.9474 -0.8538 3.1619 18 1 8.9208 0.4129 3.7797 19 6 4.2822 -0.0211 -0.0064 20 6 3.5814 -1.2088 -0.0011 21 6 4.3244 -2.5200 -0.0016 22 6 2.1973 -1.1996 -0.0005 23 6 1.4386 -2.5016 -0.0005 24 8 1.1983 -2.9128 -1.3479 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6551 2.1306 0.0004 29 1 3.2335 3.3383 -1.6418 30 1 4.5365 5.4458 -1.5821 31 1 6.3301 5.7272 0.0808 32 1 8.3252 3.0650 3.1973 33 1 5.3621 -0.0297 -0.0113 34 1 4.5031 -2.8359 -1.0294 35 1 5.2780 -2.3975 0.5118 36 1 3.7294 -3.2750 0.5123 37 1 2.0248 -3.2638 0.5129 38 1 0.4869 -2.3675 0.5137 39 1 0.7132 -3.7459 -1.4241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244704928.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:37 Heat of formation + Delta-G solvation = -22.878541 kcal Electronic energy + Delta-G solvation = -21765.549654 eV Core-core repulsion = 18636.480614 eV Total energy + Delta-G solvation = -3129.069040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.93408 -39.75520 -37.40480 -35.60470 -34.45940 -34.38004 -32.23870 -30.97541 -28.79586 -27.97940 -27.30237 -26.17353 -23.60697 -23.13045 -21.47051 -20.80599 -19.42352 -18.30931 -17.56502 -17.03901 -16.97847 -16.24804 -16.04383 -15.87362 -14.83091 -14.65902 -14.62879 -14.32080 -14.09491 -13.95725 -13.91919 -13.75223 -13.44344 -13.30102 -12.97068 -12.84643 -12.77679 -12.67909 -12.50241 -12.11389 -11.86169 -11.75877 -11.45075 -11.20816 -10.72442 -10.26539 -9.76693 -9.53870 -9.33303 -8.97607 -8.36626 -6.49057 0.23456 0.59169 0.93226 1.20369 1.35635 1.47201 1.52597 2.18346 2.78125 2.85815 3.70981 3.85619 3.95665 4.00190 4.01962 4.25327 4.27158 4.32232 4.37530 4.51096 4.57611 4.64976 4.72241 4.80099 4.84462 4.86476 4.91345 4.94537 5.04564 5.06910 5.18098 5.32814 5.39697 5.42540 5.61844 5.69341 5.80114 5.83867 6.00637 6.15335 6.24590 6.30517 6.68263 6.95152 7.03066 8.13183 8.38228 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.006455 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.845460 B = 4336.442166 C = 5752.844855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.069 4.069 3 C -0.150 4.150 4 C 0.010 3.990 5 C -0.244 4.244 6 C -0.045 4.045 7 C -0.312 4.312 8 C 0.109 3.891 9 N -0.521 5.521 10 C 0.237 3.763 11 C -0.446 4.446 12 H 0.091 0.909 13 C 0.025 3.975 14 N -0.750 5.750 15 Si 0.974 3.026 16 H -0.262 1.262 17 H -0.251 1.251 18 H -0.265 1.265 19 C -0.133 4.133 20 C -0.074 4.074 21 C -0.110 4.110 22 C -0.128 4.128 23 C 0.122 3.878 24 O -0.583 6.583 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.280 0.720 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.248 -11.594 -2.547 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.069 4.069 3 C -0.169 4.169 4 C 0.009 3.991 5 C -0.248 4.248 6 C -0.069 4.069 7 C -0.334 4.334 8 C -0.057 4.057 9 N -0.234 5.234 10 C 0.113 3.887 11 C -0.476 4.476 12 H 0.109 0.891 13 C -0.197 4.197 14 N -0.372 5.372 15 Si 0.794 3.206 16 H -0.186 1.186 17 H -0.174 1.174 18 H -0.189 1.189 19 C -0.152 4.152 20 C -0.074 4.074 21 C -0.166 4.166 22 C -0.128 4.128 23 C 0.045 3.955 24 O -0.392 6.392 25 H 0.095 0.905 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.146 0.854 31 H 0.157 0.843 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -9.074 -10.845 -1.948 14.274 hybrid contribution -0.138 -0.214 -0.122 0.282 sum -9.212 -11.059 -2.070 14.541 Atomic orbital electron populations 1.20844 0.89023 1.03509 1.02932 1.19946 0.97400 0.91781 0.97789 1.21183 0.92765 0.98038 1.04881 1.18764 0.92906 0.92100 0.95300 1.19741 1.04901 0.96212 1.03989 1.21251 0.97091 0.92528 0.96013 1.21567 1.04627 1.00360 1.06878 1.23052 0.94208 0.97565 0.90896 1.68687 1.29186 1.01487 1.24022 1.18964 0.87615 0.90687 0.91448 1.19939 1.07515 1.04618 1.15574 0.89070 1.27026 0.96123 0.98998 0.97564 1.70207 1.12619 1.25290 1.29045 0.85302 0.78321 0.78599 0.78385 1.18617 1.17439 1.18934 1.21145 0.99326 0.91831 1.02870 1.19954 0.93772 0.95461 0.98183 1.20853 0.99697 0.93239 1.02805 1.19587 0.92626 0.95046 1.05553 1.20982 0.98423 0.92008 0.84044 1.86563 1.80193 1.45869 1.26540 0.90529 0.89626 0.91283 0.86550 0.86125 0.85356 0.84294 0.90881 0.87803 0.90593 0.92129 0.89332 0.91305 0.90873 0.75428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.51 9.60 71.24 0.68 -1.82 16 2 C -0.07 -2.26 5.87 -19.90 -0.12 -2.37 16 3 C -0.15 -5.87 9.20 22.54 0.21 -5.67 16 4 C 0.01 0.45 4.97 -20.04 -0.10 0.35 16 5 C -0.24 -12.36 5.54 -19.51 -0.11 -12.47 16 6 C -0.04 -2.05 9.66 22.66 0.22 -1.83 16 7 C -0.31 -13.94 10.10 22.50 0.23 -13.72 16 8 C 0.11 5.40 11.17 84.97 0.95 6.35 16 9 N -0.52 -29.84 7.91 -188.44 -1.49 -31.33 16 10 C 0.24 13.39 6.54 40.37 0.26 13.66 16 11 C -0.45 -24.51 7.73 23.37 0.18 -24.33 16 12 H 0.09 4.84 5.69 -2.91 -0.02 4.82 16 13 C 0.03 1.32 5.48 85.33 0.47 1.78 16 14 N -0.75 -40.91 11.52 21.86 0.25 -40.66 16 15 Si 0.97 38.50 29.57 68.60 2.03 40.53 16 16 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 17 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 18 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 19 C -0.13 -5.74 7.32 22.54 0.16 -5.58 16 20 C -0.07 -2.60 5.87 -19.90 -0.12 -2.72 16 21 C -0.11 -3.03 9.59 71.24 0.68 -2.35 16 22 C -0.13 -4.05 5.52 -19.78 -0.11 -4.15 16 23 C 0.12 2.66 6.34 71.24 0.45 3.11 16 24 O -0.58 -12.42 13.64 -148.98 -2.03 -14.46 16 25 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.09 1.61 5.93 -2.39 -0.01 1.59 16 27 H 0.07 1.53 8.08 -2.39 -0.02 1.51 16 28 H 0.12 4.33 8.05 -2.91 -0.02 4.31 16 29 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 30 H 0.13 4.79 8.06 -2.91 -0.02 4.76 16 31 H 0.14 6.03 8.06 -2.91 -0.02 6.01 16 32 H 0.28 13.77 8.29 -92.71 -0.77 13.00 16 33 H 0.10 4.83 7.32 -2.91 -0.02 4.81 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 1.72 8.08 -2.39 -0.02 1.70 16 36 H 0.09 1.94 5.93 -2.39 -0.01 1.92 16 37 H 0.07 1.27 5.93 -2.39 -0.01 1.25 16 38 H 0.07 1.27 5.93 -2.39 -0.01 1.26 16 39 H 0.40 3.93 9.12 -74.06 -0.68 3.26 16 Total: -1.00 -69.50 323.27 3.12 -66.39 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.41 Total: 31.29 kcal Atomic # 6 Polarization: -55.71 SS G_CDS: 3.95 Total: -51.76 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -1.24 Total: -71.99 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -2.03 Total: -14.46 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -69.50 3.12 -66.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244704928.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.507 kcal (2) G-P(sol) polarization free energy of solvation -69.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds