Wall clock time and date at job start Tue Mar 31 2020 05:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35906 * 116.99403 * 2 1 4 4 C 1.38741 * 119.94007 * 0.02562 * 3 2 1 5 5 C 1.37896 * 120.16019 * 179.97438 * 4 3 2 6 6 C 1.39699 * 120.03741 * 359.97174 * 5 4 3 7 7 C 1.47883 * 120.06105 * 180.02562 * 6 5 4 8 8 C 1.40023 * 119.88133 * 130.00294 * 7 6 5 9 9 C 1.36197 * 120.11329 * 180.28359 * 8 7 6 10 10 C 1.40978 * 119.87941 * 359.51517 * 9 8 7 11 11 C 1.40993 * 120.10844 * 180.23291 * 10 9 8 12 12 H 1.08002 * 119.99745 * 204.84516 * 11 10 9 13 13 C 1.39967 * 120.00158 * 24.85301 * 11 10 9 14 14 N 1.30822 * 120.00058 * 17.83308 * 13 11 10 15 15 Si 1.86802 * 120.00029 * 197.83203 * 13 11 10 16 16 H 1.48500 * 109.46948 * 89.99786 * 15 13 11 17 17 H 1.48493 * 109.47052 * 210.00039 * 15 13 11 18 18 H 1.48499 * 109.47016 * 329.99686 * 15 13 11 19 19 C 1.40934 * 119.77437 * 0.48294 * 10 9 8 20 20 C 1.36221 * 119.88370 * 359.75436 * 19 10 9 21 21 C 1.50705 * 119.94422 * 180.02562 * 20 19 10 22 22 C 1.39650 * 119.88011 * 0.30499 * 6 5 4 23 23 C 1.38358 * 119.83316 * 359.44266 * 22 6 5 24 24 N 1.39940 * 120.01762 * 180.28070 * 23 22 6 25 25 H 1.09000 * 109.47491 * 300.00048 * 1 2 3 26 26 H 1.09004 * 109.47174 * 60.00214 * 1 2 3 27 27 H 1.09007 * 109.46902 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.92191 * 359.95317 * 4 3 2 29 29 H 1.08004 * 119.97987 * 179.97438 * 5 4 3 30 30 H 1.07997 * 119.94659 * 0.02562 * 8 7 6 31 31 H 1.08000 * 120.06372 * 179.74687 * 9 8 7 32 32 H 0.97005 * 120.00046 * 180.02562 * 14 13 11 33 33 H 1.07999 * 120.05453 * 179.77506 * 19 10 9 34 34 H 1.08991 * 109.47160 * 270.02080 * 21 20 19 35 35 H 1.09000 * 109.46419 * 30.02073 * 21 20 19 36 36 H 1.09003 * 109.47113 * 150.01561 * 21 20 19 37 37 H 1.08001 * 120.08323 * 179.72737 * 22 6 5 38 38 H 0.96999 * 120.00269 * 180.25355 * 24 23 22 39 39 H 0.96997 * 120.00185 * 0.25389 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2889 2.3737 0.0005 5 6 1.9101 3.6048 0.0011 6 6 3.3048 3.6844 0.0017 7 6 3.9715 5.0044 0.0028 8 6 4.9823 5.2746 0.9334 9 6 5.5955 6.4907 0.9424 10 6 5.2179 7.4746 0.0060 11 6 5.8529 8.7334 0.0079 12 1 5.3419 9.5966 -0.3924 13 6 7.1457 8.8644 0.5282 14 7 7.8970 7.8054 0.6878 15 14 7.7982 10.5514 0.9948 16 1 7.4660 10.8354 2.4140 17 1 9.2721 10.5788 0.8163 18 1 7.1750 11.5811 0.1250 19 6 4.2000 7.1974 -0.9284 20 6 3.5896 5.9796 -0.9259 21 6 2.5014 5.6815 -1.9249 22 6 4.0683 2.5151 -0.0047 23 6 3.4398 1.2825 0.0001 24 7 4.2011 0.1084 -0.0004 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2105 2.3145 0.0002 29 1 1.3180 4.5081 0.0011 30 1 5.2733 4.5189 1.6479 31 1 6.3722 6.6996 1.6632 32 1 8.7928 7.8962 1.0487 33 1 3.9047 7.9491 -1.6455 34 1 1.5358 5.9638 -1.5054 35 1 2.6810 6.2493 -2.8379 36 1 2.5004 4.6158 -2.1541 37 1 5.1468 2.5728 -0.0087 38 1 3.7602 -0.7556 -0.0007 39 1 5.1698 0.1585 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244894583.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:47 Heat of formation + Delta-G solvation = -5.885097 kcal Electronic energy + Delta-G solvation = -21158.348408 eV Core-core repulsion = 18030.016259 eV Total energy + Delta-G solvation = -3128.332149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.85125 -38.14494 -36.73386 -34.52076 -33.58995 -31.29903 -30.86976 -28.80206 -28.37506 -26.97208 -25.79754 -24.81910 -22.05425 -21.54294 -20.27049 -19.70179 -17.78474 -16.94593 -16.67402 -16.25896 -15.54536 -15.32106 -14.89387 -14.43530 -13.86877 -13.71392 -13.64191 -13.13846 -12.89497 -12.61059 -12.51545 -12.26107 -11.92050 -11.75400 -11.52675 -11.35618 -11.05854 -10.98224 -10.84788 -10.71815 -10.44312 -10.27126 -10.12857 -9.59033 -9.39504 -9.18470 -8.10984 -7.44387 -7.21130 -6.84865 -6.75516 -4.36976 1.78432 2.01806 2.77691 3.03907 3.07309 3.10028 3.19425 3.49276 3.87937 4.19889 4.30852 4.61764 5.06870 5.18933 5.23599 5.45773 5.54874 5.63727 5.76281 5.94647 6.02182 6.08506 6.11616 6.27211 6.40651 6.43300 6.55929 6.65588 6.80223 6.96051 7.00143 7.14933 7.19665 7.36412 7.37429 7.46415 7.63410 7.89322 7.99205 8.03727 8.08597 8.15044 8.25628 8.59740 8.83291 8.95034 10.10029 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.033896 B = 0.003639 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.851353 B = 7691.589130 C = 8240.991639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.328 6.328 3 C 0.018 3.982 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.032 3.968 7 C -0.196 4.196 8 C -0.075 4.075 9 C -0.173 4.173 10 C 0.119 3.881 11 C -0.455 4.455 12 H 0.079 0.921 13 C 0.075 3.925 14 N -0.785 5.785 15 Si 0.909 3.091 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.261 1.261 19 C -0.227 4.227 20 C -0.038 4.038 21 C -0.107 4.107 22 C -0.172 4.172 23 C 0.195 3.805 24 N -0.881 5.881 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.282 0.718 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.124 0.876 38 H 0.397 0.603 39 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.299 -10.497 -0.512 13.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C -0.029 4.029 4 C -0.178 4.178 5 C -0.164 4.164 6 C 0.031 3.969 7 C -0.198 4.198 8 C -0.094 4.094 9 C -0.192 4.192 10 C 0.116 3.884 11 C -0.484 4.484 12 H 0.097 0.903 13 C -0.144 4.144 14 N -0.409 5.409 15 Si 0.734 3.266 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.185 1.185 19 C -0.247 4.247 20 C -0.038 4.038 21 C -0.164 4.164 22 C -0.195 4.195 23 C 0.092 3.908 24 N -0.422 5.422 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.106 0.894 31 H 0.135 0.865 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.142 0.858 38 H 0.225 0.775 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -8.003 -10.698 -0.452 13.368 hybrid contribution 0.418 0.571 0.233 0.745 sum -7.586 -10.127 -0.219 12.655 Atomic orbital electron populations 1.22867 0.79387 1.02831 1.00963 1.85858 1.20457 1.27312 1.90700 1.18353 0.90227 0.84348 1.09997 1.20836 0.98823 0.92017 1.06082 1.20927 0.94143 0.96265 1.05061 1.18637 0.91906 0.92441 0.93873 1.17905 1.04521 0.92887 1.04446 1.20444 0.95116 0.96607 0.97223 1.20967 1.02953 0.94036 1.01263 1.17665 0.89576 0.92702 0.88416 1.19617 0.98817 0.95476 1.34475 0.90268 1.25966 0.96792 0.98627 0.92981 1.69835 1.08435 1.31063 1.31594 0.86292 0.78092 0.82249 0.80015 1.19173 1.20257 1.18531 1.20517 1.04798 0.96363 1.03014 1.19077 0.95870 0.93560 0.95277 1.20806 0.97035 1.01097 0.97443 1.20649 0.99574 0.89501 1.09752 1.17012 0.87209 0.87598 0.98951 1.42228 1.07931 1.05330 1.86759 0.93206 0.93215 0.89137 0.86379 0.86306 0.89362 0.86534 0.90709 0.88935 0.92680 0.93122 0.92355 0.85823 0.77542 0.77753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 9.81 101.05 0.99 1.33 16 2 O -0.33 -4.50 9.73 -19.45 -0.19 -4.69 16 3 C 0.02 0.28 6.71 -38.90 -0.26 0.02 16 4 C -0.16 -2.43 9.02 -39.52 -0.36 -2.79 16 5 C -0.14 -2.50 7.88 -39.16 -0.31 -2.81 16 6 C 0.03 0.63 4.71 -104.88 -0.49 0.13 16 7 C -0.20 -4.37 5.49 -104.63 -0.57 -4.95 16 8 C -0.08 -1.78 9.44 -39.65 -0.37 -2.15 16 9 C -0.17 -4.46 8.63 -39.28 -0.34 -4.79 16 10 C 0.12 3.13 5.57 -106.80 -0.60 2.54 16 11 C -0.46 -11.87 9.03 -37.89 -0.34 -12.21 16 12 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 13 C 0.08 1.85 5.13 -17.33 -0.09 1.76 16 14 N -0.78 -19.91 10.96 55.55 0.61 -19.30 16 15 Si 0.91 18.29 29.60 -169.99 -5.03 13.26 16 16 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 17 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 18 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 19 C -0.23 -5.54 9.36 -39.29 -0.37 -5.91 16 20 C -0.04 -0.84 5.83 -104.69 -0.61 -1.45 16 21 C -0.11 -1.95 8.43 36.01 0.30 -1.65 16 22 C -0.17 -3.10 9.34 -39.01 -0.36 -3.46 16 23 C 0.20 3.15 6.76 -83.61 -0.57 2.59 16 24 N -0.88 -11.34 9.09 32.49 0.30 -11.05 16 25 H 0.05 0.45 7.65 -51.93 -0.40 0.06 16 26 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 27 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.12 1.49 6.27 -52.49 -0.33 1.16 16 29 H 0.12 2.00 6.82 -52.48 -0.36 1.64 16 30 H 0.09 1.92 8.04 -52.49 -0.42 1.50 16 31 H 0.12 3.09 6.17 -52.49 -0.32 2.77 16 32 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 33 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 34 H 0.05 0.91 7.47 -51.93 -0.39 0.52 16 35 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 36 H 0.06 1.04 6.44 -51.93 -0.33 0.70 16 37 H 0.12 2.20 8.04 -52.49 -0.42 1.78 16 38 H 0.40 4.57 8.18 -40.82 -0.33 4.24 16 39 H 0.39 4.38 8.84 -40.82 -0.36 4.02 16 LS Contribution 323.89 15.07 4.88 4.88 Total: -1.00 -28.25 323.89 -8.66 -36.91 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -4.88 Total: 13.77 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: -4.35 Total: -33.79 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.90 Total: -30.34 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.19 Total: -4.69 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.25 -8.66 -36.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244894583.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.030 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds