Wall clock time and date at job start Tue Mar 31 2020 05:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35907 * 116.99611 * 2 1 4 4 C 1.38744 * 119.93885 * 359.97438 * 3 2 1 5 5 C 1.37894 * 120.15847 * 179.97438 * 4 3 2 6 6 C 1.39701 * 120.04128 * 359.79321 * 5 4 3 7 7 C 1.47873 * 120.06668 * 180.23376 * 6 5 4 8 8 C 1.40020 * 119.89032 * 180.22976 * 7 6 5 9 9 C 1.36189 * 120.11756 * 179.97438 * 8 7 6 10 10 C 1.40971 * 119.88338 * 359.97438 * 9 8 7 11 11 C 1.40987 * 120.11519 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00214 * 153.72509 * 11 10 9 13 13 C 1.39970 * 119.99988 * 333.72920 * 11 10 9 14 14 N 1.30821 * 119.99827 * 343.35488 * 13 11 10 15 15 Si 1.86798 * 120.00117 * 163.35558 * 13 11 10 16 16 H 1.48502 * 109.46859 * 94.84290 * 15 13 11 17 17 H 1.48498 * 109.47285 * 214.83864 * 15 13 11 18 18 H 1.48496 * 109.47201 * 334.84361 * 15 13 11 19 19 C 1.40940 * 119.77538 * 0.02562 * 10 9 8 20 20 C 1.50694 * 120.06021 * 180.02562 * 19 10 9 21 21 C 1.36230 * 119.87870 * 359.74062 * 19 10 9 22 22 C 1.39654 * 119.87655 * 0.45869 * 6 5 4 23 23 C 1.38364 * 119.83480 * 359.52088 * 22 6 5 24 24 N 1.39938 * 120.01990 * 180.22895 * 23 22 6 25 25 H 1.09003 * 109.46908 * 299.99706 * 1 2 3 26 26 H 1.09000 * 109.47441 * 59.99646 * 1 2 3 27 27 H 1.09005 * 109.47276 * 180.02562 * 1 2 3 28 28 H 1.07993 * 119.92311 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.97808 * 180.02562 * 5 4 3 30 30 H 1.08001 * 119.93603 * 359.94930 * 8 7 6 31 31 H 1.08001 * 120.06147 * 179.97438 * 9 8 7 32 32 H 0.97003 * 120.00309 * 180.02562 * 14 13 11 33 33 H 1.08994 * 109.47022 * 90.00147 * 20 19 10 34 34 H 1.09003 * 109.47456 * 210.00397 * 20 19 10 35 35 H 1.09002 * 109.46910 * 329.99912 * 20 19 10 36 36 H 1.07997 * 119.93903 * 180.27030 * 21 19 10 37 37 H 1.08000 * 120.08562 * 179.79301 * 22 6 5 38 38 H 0.97000 * 120.00015 * 0.02562 * 24 23 22 39 39 H 0.97001 * 120.00334 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2890 2.3737 -0.0005 5 6 1.9102 3.6048 0.0000 6 6 3.3049 3.6844 0.0054 7 6 3.9717 5.0043 0.0112 8 6 5.3699 5.0797 0.0118 9 6 5.9887 6.2928 0.0166 10 6 5.2191 7.4739 0.0205 11 6 5.8547 8.7324 0.0260 12 1 5.3500 9.5941 -0.3852 13 6 7.1400 8.8650 0.5643 14 7 7.6224 7.9311 1.3431 15 14 8.1662 10.3753 0.1707 16 1 7.9929 11.3853 1.2455 17 1 9.5977 9.9910 0.0789 18 1 7.7240 10.9504 -1.1250 19 6 3.8121 7.3925 0.0199 20 6 2.9831 8.6509 0.0234 21 6 3.2028 6.1741 0.0102 22 6 4.0685 2.5150 0.0006 23 6 3.4398 1.2825 0.0006 24 7 4.2011 0.1083 0.0006 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 0.2107 2.3145 -0.0005 29 1 1.3181 4.5080 0.0000 30 1 5.9585 4.1742 0.0089 31 1 7.0672 6.3500 0.0175 32 1 8.5130 8.0231 1.7165 33 1 2.7835 8.9573 -1.0034 34 1 2.0399 8.4633 0.5365 35 1 3.5264 9.4424 0.5397 36 1 2.1247 6.1105 0.0053 37 1 5.1469 2.5726 0.0015 38 1 5.1698 0.1583 0.0011 39 1 3.7602 -0.7557 0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244896206.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:41 Heat of formation + Delta-G solvation = -5.295382 kcal Electronic energy + Delta-G solvation = -21005.122475 eV Core-core repulsion = 17876.815898 eV Total energy + Delta-G solvation = -3128.306577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.77261 -38.11593 -36.79222 -34.42955 -33.54603 -31.89081 -30.23017 -28.94578 -28.28685 -27.05770 -25.91448 -24.59681 -22.03144 -22.01136 -20.13041 -19.26843 -17.82598 -17.29651 -16.59428 -16.07357 -15.48993 -15.41149 -14.83929 -14.64496 -13.89002 -13.57949 -13.46922 -12.92804 -12.85188 -12.73287 -12.54588 -12.19316 -11.94435 -11.59828 -11.34577 -11.23306 -11.15699 -11.05689 -10.84783 -10.68221 -10.57071 -10.49833 -9.97720 -9.57116 -9.35872 -9.22835 -8.24313 -7.43597 -7.25959 -6.90937 -6.62646 -4.38879 1.70172 2.03945 2.80244 3.00322 3.04933 3.07434 3.23353 3.54819 3.82874 4.22871 4.30859 4.74693 5.10255 5.22530 5.26049 5.48558 5.58696 5.62837 5.77621 5.93103 6.08529 6.14267 6.24731 6.39638 6.39984 6.60009 6.65416 6.68714 6.84188 6.93589 6.98773 7.08170 7.21624 7.31325 7.43504 7.49617 7.60296 7.87265 7.99173 8.02352 8.11404 8.12748 8.20797 8.52660 8.76446 8.89293 10.03176 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.032376 B = 0.003620 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.626629 B = 7732.962460 C = 8507.080732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.006 3.994 4 C -0.149 4.149 5 C -0.163 4.163 6 C 0.038 3.962 7 C -0.196 4.196 8 C -0.079 4.079 9 C -0.169 4.169 10 C 0.123 3.877 11 C -0.445 4.445 12 H 0.083 0.917 13 C 0.074 3.926 14 N -0.781 5.781 15 Si 0.909 3.091 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.259 1.259 19 C -0.202 4.202 20 C -0.085 4.085 21 C -0.061 4.061 22 C -0.189 4.189 23 C 0.203 3.797 24 N -0.881 5.881 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.283 0.717 33 H 0.041 0.959 34 H 0.038 0.962 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.394 0.606 39 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.796 -9.162 -1.683 11.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.244 6.244 3 C -0.041 4.041 4 C -0.168 4.168 5 C -0.183 4.183 6 C 0.037 3.963 7 C -0.197 4.197 8 C -0.097 4.097 9 C -0.188 4.188 10 C 0.120 3.880 11 C -0.474 4.474 12 H 0.101 0.899 13 C -0.146 4.146 14 N -0.405 5.405 15 Si 0.733 3.267 16 H -0.194 1.194 17 H -0.199 1.199 18 H -0.182 1.182 19 C -0.204 4.204 20 C -0.142 4.142 21 C -0.079 4.079 22 C -0.212 4.212 23 C 0.100 3.900 24 N -0.422 5.422 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.143 0.857 38 H 0.222 0.778 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -6.535 -9.340 -1.528 11.502 hybrid contribution 0.499 0.425 -0.011 0.655 sum -6.036 -8.916 -1.539 10.876 Atomic orbital electron populations 1.22850 0.79517 1.02741 1.00899 1.85847 1.20341 1.27342 1.90862 1.18300 0.90212 0.84299 1.11284 1.20795 0.98721 0.92008 1.05309 1.20778 0.94088 0.96348 1.07088 1.18674 0.92027 0.92428 0.93176 1.18041 0.92809 0.90185 1.18644 1.20512 0.93038 0.96748 0.99435 1.20956 0.99742 0.91328 1.06803 1.17581 0.90255 0.93316 0.86867 1.19670 0.98852 0.95728 1.33111 0.89855 1.26012 0.97929 0.97932 0.92713 1.69830 1.17021 1.32911 1.20718 0.86283 0.78983 0.81258 0.80222 1.19421 1.19911 1.18249 1.19444 0.94019 0.93505 1.13393 1.20408 0.97442 0.96656 0.99688 1.20272 0.97028 0.91898 0.98747 1.20502 0.99530 0.89535 1.11635 1.16976 0.87192 0.87512 0.98338 1.42225 1.07882 1.05368 1.86752 0.93284 0.93283 0.89202 0.86471 0.86371 0.89133 0.86528 0.90583 0.94006 0.94296 0.92064 0.88915 0.85738 0.77828 0.77547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 9.81 101.05 0.99 1.35 16 2 O -0.33 -4.67 9.73 -19.45 -0.19 -4.86 16 3 C 0.01 0.10 6.71 -38.90 -0.26 -0.16 16 4 C -0.15 -2.39 9.02 -39.52 -0.36 -2.75 16 5 C -0.16 -2.95 9.42 -39.16 -0.37 -3.32 16 6 C 0.04 0.76 5.88 -104.88 -0.62 0.14 16 7 C -0.20 -4.41 5.90 -104.63 -0.62 -5.02 16 8 C -0.08 -1.84 9.36 -39.65 -0.37 -2.21 16 9 C -0.17 -4.29 8.61 -39.28 -0.34 -4.63 16 10 C 0.12 3.15 5.56 -106.80 -0.59 2.56 16 11 C -0.45 -11.20 8.09 -37.89 -0.31 -11.51 16 12 H 0.08 2.00 6.88 -52.48 -0.36 1.64 16 13 C 0.07 1.76 5.14 -17.33 -0.09 1.68 16 14 N -0.78 -19.38 10.99 55.55 0.61 -18.77 16 15 Si 0.91 17.81 29.59 -169.99 -5.03 12.78 16 16 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 17 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 18 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 19 C -0.20 -4.79 5.90 -104.33 -0.62 -5.40 16 20 C -0.09 -1.72 9.39 36.00 0.34 -1.38 16 21 C -0.06 -1.38 8.99 -39.65 -0.36 -1.73 16 22 C -0.19 -3.47 9.26 -39.01 -0.36 -3.84 16 23 C 0.20 3.37 6.76 -83.61 -0.57 2.81 16 24 N -0.88 -11.59 9.09 32.49 0.30 -11.30 16 25 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 26 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.12 1.55 6.27 -52.49 -0.33 1.22 16 29 H 0.12 2.02 6.17 -52.49 -0.32 1.69 16 30 H 0.09 1.91 6.17 -52.49 -0.32 1.58 16 31 H 0.12 3.03 6.23 -52.49 -0.33 2.70 16 32 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.06 1.26 6.77 -51.93 -0.35 0.90 16 36 H 0.09 1.85 6.17 -52.49 -0.32 1.53 16 37 H 0.12 2.19 6.17 -52.49 -0.32 1.86 16 38 H 0.39 4.43 8.84 -40.82 -0.36 4.06 16 39 H 0.40 4.69 8.18 -40.82 -0.33 4.35 16 LS Contribution 320.35 15.07 4.83 4.83 Total: -1.00 -27.91 320.35 -8.53 -36.44 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -4.55 Total: 14.29 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: -4.49 Total: -33.42 kcal Atomic # 7 Polarization: -30.97 SS G_CDS: 0.91 Total: -30.07 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.19 Total: -4.86 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.91 -8.53 -36.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244896206.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.146 kcal (2) G-P(sol) polarization free energy of solvation -27.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds