Wall clock time and date at job start Tue Mar 31 2020 05:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35750 * 117.00347 * 2 1 4 4 C 1.38586 * 120.14021 * 0.02562 * 3 2 1 5 5 C 1.38175 * 120.08798 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.80359 * 179.97438 * 5 4 3 7 7 C 1.38534 * 120.38562 * 0.25044 * 5 4 3 8 8 C 1.50706 * 119.85399 * 179.74222 * 7 5 4 9 9 C 1.37831 * 120.29295 * 359.49105 * 7 5 4 10 10 C 1.39712 * 119.89661 * 0.50634 * 9 7 5 11 11 C 1.47642 * 120.18605 * 179.76836 * 10 9 7 12 12 N 1.32654 * 119.99850 * 130.07396 * 11 10 9 13 13 C 1.31731 * 121.70992 * 179.75426 * 12 11 10 14 14 C 1.38876 * 121.51655 * 0.52843 * 13 12 11 15 15 C 1.36886 * 119.81161 * 359.74405 * 14 13 12 16 16 C 1.41111 * 118.40631 * 359.97438 * 15 14 13 17 17 C 1.40840 * 120.72516 * 179.97438 * 16 15 14 18 18 H 1.08007 * 120.00012 * 149.06823 * 17 16 15 19 19 C 1.40054 * 120.00210 * 329.08269 * 17 16 15 20 20 N 1.30791 * 119.99766 * 348.69510 * 19 17 16 21 21 Si 1.86802 * 119.99967 * 168.69942 * 19 17 16 22 22 H 1.48497 * 109.47360 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.46572 * 119.99887 * 21 19 17 24 24 H 1.48492 * 109.46860 * 239.99646 * 21 19 17 25 25 H 1.09007 * 109.47078 * 59.99460 * 1 2 3 26 26 H 1.08994 * 109.46925 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46818 * 300.00058 * 1 2 3 28 28 H 1.07998 * 119.95675 * 359.95110 * 4 3 2 29 29 H 1.08999 * 109.47165 * 89.99778 * 6 5 4 30 30 H 1.09000 * 109.47059 * 329.99869 * 6 5 4 31 31 H 1.09002 * 109.46698 * 209.99806 * 6 5 4 32 32 H 1.09008 * 109.46257 * 89.99993 * 8 7 5 33 33 H 1.08996 * 109.47426 * 209.99846 * 8 7 5 34 34 H 1.08995 * 109.47078 * 330.00809 * 8 7 5 35 35 H 1.07993 * 120.04765 * 180.27798 * 9 7 5 36 36 H 1.07998 * 119.24332 * 180.29676 * 13 12 11 37 37 H 1.07998 * 120.09383 * 179.72117 * 14 13 12 38 38 H 1.08005 * 120.79178 * 179.97438 * 15 14 13 39 39 H 0.97002 * 119.99881 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2095 0.0000 4 6 1.2935 2.3737 0.0005 5 6 1.9220 3.6042 0.0011 6 6 1.0981 4.8661 0.0011 7 6 3.3050 3.6847 -0.0041 8 6 3.9780 5.0331 -0.0094 9 6 4.0682 2.5370 0.0006 10 6 3.4453 1.2864 0.0001 11 6 4.2566 0.0529 0.0001 12 7 4.0029 -0.9079 0.8788 13 6 4.7023 -2.0239 0.9058 14 6 5.7492 -2.2461 0.0208 15 6 6.0682 -1.2935 -0.9090 16 6 5.3116 -0.1026 -0.9367 17 6 5.5980 0.9102 -1.8726 18 1 4.8047 1.5418 -2.2445 19 6 6.9114 1.0982 -2.3211 20 7 7.9014 0.4928 -1.7178 21 14 7.2491 2.2137 -3.7810 22 1 5.9687 2.7745 -4.2821 23 1 8.1445 3.3214 -3.3606 24 1 7.9027 1.4315 -4.8608 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2149 2.3190 0.0002 29 1 0.8991 5.1701 1.0287 30 1 0.1545 4.6839 -0.5132 31 1 1.6450 5.6570 -0.5124 32 1 4.1439 5.3602 1.0171 33 1 4.9346 4.9598 -0.5265 34 1 3.3420 5.7546 -0.5222 35 1 5.1460 2.6044 0.0011 36 1 4.4583 -2.7819 1.6353 37 1 6.3102 -3.1678 0.0662 38 1 6.8795 -1.4496 -1.6046 39 1 8.8111 0.6233 -2.0283 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245017079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:23 Heat of formation + Delta-G solvation = 1.402819 kcal Electronic energy + Delta-G solvation = -22110.076724 eV Core-core repulsion = 18982.060603 eV Total energy + Delta-G solvation = -3128.016121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.71213 -38.08104 -37.24159 -34.05573 -32.91387 -31.26917 -30.52938 -29.70069 -27.48875 -26.77136 -25.74372 -24.73210 -21.87481 -21.65552 -20.86219 -19.53078 -17.35332 -16.97887 -15.90103 -15.68180 -15.19514 -15.07465 -14.23046 -14.05601 -13.84632 -13.62172 -13.52713 -13.40804 -12.58089 -12.53042 -12.33906 -11.96436 -11.82549 -11.58105 -11.49223 -11.46760 -11.33937 -11.28367 -11.05957 -10.72853 -10.60166 -10.30225 -10.13201 -9.70873 -9.38639 -8.41975 -7.97855 -7.92946 -7.63375 -7.06903 -6.78743 -4.46262 1.83831 2.11778 2.67156 2.99215 3.02708 3.08973 3.21477 3.86347 3.92551 4.38382 4.63194 5.17445 5.34273 5.38773 5.43283 5.47208 5.48218 5.64235 5.73640 5.76793 5.78892 5.93645 6.01406 6.06252 6.15949 6.29280 6.31184 6.42923 6.50745 6.73271 6.76097 6.84086 6.98768 7.05198 7.15678 7.24105 7.35469 7.54948 7.75748 7.89359 7.96667 8.12980 8.45166 8.67336 8.74905 9.68118 10.08532 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012468 B = 0.008130 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.178926 B = 3443.351813 C = 5082.848261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.292 6.292 3 C 0.132 3.868 4 C -0.216 4.216 5 C -0.070 4.070 6 C -0.110 4.110 7 C -0.134 4.134 8 C -0.106 4.106 9 C -0.049 4.049 10 C -0.008 4.008 11 C 0.032 3.968 12 N -0.442 5.442 13 C -0.029 4.029 14 C -0.153 4.153 15 C -0.127 4.127 16 C 0.086 3.914 17 C -0.443 4.443 18 H 0.085 0.915 19 C 0.075 3.925 20 N -0.795 5.795 21 Si 0.906 3.094 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.272 1.272 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.047 0.953 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.135 0.865 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.954 5.786 0.470 9.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.205 6.205 3 C 0.086 3.914 4 C -0.235 4.235 5 C -0.070 4.070 6 C -0.167 4.167 7 C -0.134 4.134 8 C -0.163 4.163 9 C -0.068 4.068 10 C -0.010 4.010 11 C -0.106 4.106 12 N -0.150 5.150 13 C -0.190 4.190 14 C -0.173 4.173 15 C -0.153 4.153 16 C 0.082 3.918 17 C -0.473 4.473 18 H 0.103 0.897 19 C -0.143 4.143 20 N -0.420 5.420 21 Si 0.731 3.269 22 H -0.181 1.181 23 H -0.197 1.197 24 H -0.197 1.197 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.066 0.934 28 H 0.135 0.865 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.153 0.847 36 H 0.136 0.864 37 H 0.115 0.885 38 H 0.141 0.859 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.277 5.674 1.058 10.091 hybrid contribution 0.791 0.238 -1.252 1.500 sum -7.486 5.913 -0.194 9.541 Atomic orbital electron populations 1.22927 0.80412 1.02980 1.00347 1.86247 1.19313 1.26622 1.88272 1.19153 0.91754 0.83739 0.96791 1.20798 0.98879 0.91834 1.11949 1.19348 0.93174 0.93975 1.00542 1.20783 0.98828 0.95397 1.01644 1.19458 0.92655 0.95271 1.06006 1.20722 1.00259 0.93848 1.01464 1.21063 1.00302 0.89661 0.95796 1.17778 0.88371 0.92764 1.02043 1.19351 1.00780 0.93492 0.97021 1.67106 1.25845 1.00465 1.21541 1.21670 0.98020 0.96454 1.02852 1.21430 0.98593 0.99138 0.98128 1.21328 1.01618 0.92613 0.99708 1.18346 0.90240 0.92427 0.90813 1.19516 0.93740 1.14093 1.19965 0.89670 1.25943 0.95893 0.95847 0.96653 1.69765 1.00697 1.36006 1.35567 0.86259 0.79630 0.80004 0.81041 1.18096 1.19733 1.19680 0.93545 0.89069 0.93415 0.86454 0.91767 0.92383 0.91399 0.92101 0.91800 0.91995 0.84670 0.86360 0.88477 0.85923 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.29 -6.05 9.50 -18.96 -0.18 -6.23 16 3 C 0.13 2.78 6.67 -38.72 -0.26 2.52 16 4 C -0.22 -3.81 8.67 -39.48 -0.34 -4.15 16 5 C -0.07 -1.16 5.89 -104.53 -0.62 -1.78 16 6 C -0.11 -1.36 9.60 36.01 0.35 -1.01 16 7 C -0.13 -2.40 5.88 -104.66 -0.61 -3.01 16 8 C -0.11 -1.53 9.59 36.01 0.35 -1.18 16 9 C -0.05 -1.05 7.72 -39.18 -0.30 -1.35 16 10 C -0.01 -0.19 5.09 -104.77 -0.53 -0.72 16 11 C 0.03 0.83 6.07 -82.26 -0.50 0.34 16 12 N -0.44 -11.40 9.70 -9.19 -0.09 -11.49 16 13 C -0.03 -0.70 11.16 -17.36 -0.19 -0.89 16 14 C -0.15 -3.60 10.03 -39.83 -0.40 -4.00 16 15 C -0.13 -3.26 8.70 -38.98 -0.34 -3.60 16 16 C 0.09 2.29 5.52 -106.41 -0.59 1.70 16 17 C -0.44 -11.32 6.96 -37.92 -0.26 -11.58 16 18 H 0.09 2.17 6.86 -52.48 -0.36 1.81 16 19 C 0.07 1.80 5.25 -17.31 -0.09 1.71 16 20 N -0.80 -19.74 11.06 55.55 0.61 -19.13 16 21 Si 0.91 18.16 29.58 -169.99 -5.03 13.13 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 23 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 28 H 0.12 1.73 6.30 -52.49 -0.33 1.40 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.07 0.76 5.91 -51.93 -0.31 0.45 16 32 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.06 0.76 5.92 -51.93 -0.31 0.45 16 35 H 0.14 3.01 7.27 -52.49 -0.38 2.63 16 36 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 37 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 38 H 0.12 3.18 6.52 -52.48 -0.34 2.84 16 39 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 LS Contribution 322.87 15.07 4.87 4.87 Total: -1.00 -29.33 322.87 -8.09 -37.41 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -4.91 Total: 7.04 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -3.36 Total: -25.61 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.53 Total: -30.62 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.18 Total: -6.23 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.33 -8.09 -37.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245017079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.815 kcal (2) G-P(sol) polarization free energy of solvation -29.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds