Wall clock time and date at job start Tue Mar 31 2020 05:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35812 * 116.99973 * 2 1 4 4 C 1.38608 * 120.12250 * 0.02562 * 3 2 1 5 5 C 1.38158 * 120.06502 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.84502 * 179.97438 * 5 4 3 7 7 C 1.38419 * 120.31025 * 0.27162 * 5 4 3 8 8 C 1.50698 * 119.87572 * 179.72817 * 7 5 4 9 9 C 1.37977 * 120.24640 * 359.48964 * 7 5 4 10 10 C 1.39342 * 119.92782 * 0.48507 * 9 7 5 11 11 C 1.48258 * 120.15410 * 179.74465 * 10 9 7 12 12 C 1.38964 * 119.61955 * 0.02562 * 11 10 9 13 13 C 1.40821 * 118.76377 * 179.97438 * 12 11 10 14 14 C 1.41525 * 120.98752 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00054 * 23.19160 * 14 13 12 16 16 C 1.40037 * 120.00219 * 203.19583 * 14 13 12 17 17 N 1.30740 * 119.99972 * 17.28971 * 16 14 13 18 18 Si 1.86802 * 120.00243 * 197.29510 * 16 14 13 19 19 H 1.48503 * 109.47279 * 59.99596 * 18 16 14 20 20 H 1.48497 * 109.47183 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46911 * 299.99749 * 18 16 14 22 22 C 1.41160 * 118.02782 * 359.97438 * 13 12 11 23 23 C 1.37712 * 119.08544 * 0.02562 * 22 13 12 24 24 N 1.31943 * 121.16485 * 359.71708 * 23 22 13 25 25 H 1.08997 * 109.47174 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46966 * 299.99577 * 1 2 3 27 27 H 1.09002 * 109.47529 * 59.99528 * 1 2 3 28 28 H 1.08005 * 119.96943 * 0.02562 * 4 3 2 29 29 H 1.09004 * 109.46845 * 90.00289 * 6 5 4 30 30 H 1.08997 * 109.47149 * 329.99702 * 6 5 4 31 31 H 1.08996 * 109.46991 * 209.99732 * 6 5 4 32 32 H 1.08992 * 109.47563 * 89.99499 * 8 7 5 33 33 H 1.08995 * 109.47135 * 210.00208 * 8 7 5 34 34 H 1.09004 * 109.46881 * 329.99731 * 8 7 5 35 35 H 1.07990 * 120.03386 * 180.26006 * 9 7 5 36 36 H 1.08004 * 120.62137 * 359.97438 * 12 11 10 37 37 H 0.96999 * 119.99966 * 180.02562 * 17 16 14 38 38 H 1.07994 * 120.45390 * 179.97438 * 22 13 12 39 39 H 1.08003 * 119.41836 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 1.2931 2.3742 0.0005 5 6 1.9216 3.6045 0.0011 6 6 1.0987 4.8670 0.0011 7 6 3.3035 3.6831 -0.0046 8 6 3.9788 5.0303 -0.0102 9 6 4.0651 2.5325 -0.0002 10 6 3.4418 1.2863 -0.0003 11 6 4.2553 0.0468 -0.0013 12 6 5.6421 0.1354 -0.0016 13 6 6.3970 -1.0534 -0.0020 14 6 7.8118 -1.0180 -0.0029 15 1 8.3304 -0.1450 0.3650 16 6 8.5394 -2.1149 -0.4810 17 7 7.9519 -3.0146 -1.2258 18 14 10.3494 -2.2928 -0.0545 19 1 10.5048 -2.3743 1.4201 20 1 10.8855 -3.5295 -0.6774 21 1 11.0965 -1.1160 -0.5666 22 6 5.7008 -2.2813 -0.0015 23 6 4.3237 -2.2701 -0.0011 24 7 3.6501 -1.1355 0.0043 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.2145 2.3194 0.0014 29 1 0.8999 5.1712 1.0288 30 1 0.1549 4.6856 -0.5132 31 1 1.6461 5.6575 -0.5123 32 1 4.1457 5.3574 1.0161 33 1 4.9351 4.9552 -0.5276 34 1 3.3439 5.7528 -0.5231 35 1 5.1430 2.5978 -0.0004 36 1 6.1318 1.0980 -0.0016 37 1 8.4557 -3.7745 -1.5566 38 1 6.2407 -3.2166 -0.0022 39 1 3.7856 -3.2065 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245017842.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:28 Heat of formation + Delta-G solvation = 6.377100 kcal Electronic energy + Delta-G solvation = -21394.701985 eV Core-core repulsion = 18266.901565 eV Total energy + Delta-G solvation = -3127.800420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.93094 -38.02816 -37.42042 -34.21042 -32.95952 -31.53853 -30.63785 -29.41797 -27.57354 -26.82902 -25.79785 -25.10557 -22.40231 -21.55096 -20.71532 -19.79116 -17.67426 -16.81012 -16.05642 -15.36349 -15.27165 -14.92249 -14.44410 -14.06327 -14.00916 -13.76813 -13.68959 -13.41626 -12.72466 -12.64954 -12.50534 -12.33670 -12.20673 -11.77270 -11.64514 -11.45660 -11.35201 -11.21720 -11.05997 -10.79183 -10.48166 -10.33032 -10.25036 -9.76577 -9.38659 -8.71215 -7.98632 -7.85407 -7.80466 -6.93352 -6.78271 -4.55489 1.44994 1.83041 2.80329 2.94902 3.03072 3.05710 3.30412 3.81764 3.87182 4.16541 4.74666 4.94321 5.07637 5.16103 5.20392 5.35491 5.41443 5.46730 5.56251 5.67439 5.74664 5.75902 5.80324 5.83106 5.92061 6.02121 6.12335 6.21189 6.41720 6.57645 6.65922 6.81629 6.92534 6.93677 7.10654 7.15881 7.28811 7.39051 7.52066 7.88347 7.98112 8.15596 8.49052 8.77499 8.78544 9.70065 10.10185 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.004523 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.520794 B = 6188.952737 C = 7409.846651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.262 6.262 3 C 0.150 3.850 4 C -0.219 4.219 5 C -0.060 4.060 6 C -0.113 4.113 7 C -0.133 4.133 8 C -0.107 4.107 9 C -0.069 4.069 10 C -0.049 4.049 11 C 0.157 3.843 12 C -0.255 4.255 13 C 0.126 3.874 14 C -0.459 4.459 15 H 0.080 0.920 16 C 0.079 3.921 17 N -0.787 5.787 18 Si 0.911 3.089 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.264 1.264 22 C -0.210 4.210 23 C 0.084 3.916 24 N -0.535 5.535 25 H 0.094 0.906 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.122 0.878 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.133 0.867 36 H 0.102 0.898 37 H 0.283 0.717 38 H 0.126 0.874 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.151 9.732 1.637 13.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.173 6.173 3 C 0.102 3.898 4 C -0.237 4.237 5 C -0.061 4.061 6 C -0.169 4.169 7 C -0.133 4.133 8 C -0.164 4.164 9 C -0.088 4.088 10 C -0.051 4.051 11 C 0.023 3.977 12 C -0.278 4.278 13 C 0.118 3.882 14 C -0.490 4.490 15 H 0.098 0.902 16 C -0.141 4.141 17 N -0.413 5.413 18 Si 0.735 3.265 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.189 1.189 22 C -0.233 4.233 23 C -0.069 4.069 24 N -0.249 5.249 25 H 0.112 0.888 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.140 0.860 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.150 0.850 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.143 0.857 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.960 9.243 1.500 13.670 hybrid contribution 1.534 -0.168 0.057 1.544 sum -8.426 9.075 1.556 12.481 Atomic orbital electron populations 1.23013 0.81000 1.03269 1.00123 1.86602 1.18553 1.24994 1.87107 1.19109 0.91631 0.84379 0.94646 1.20942 0.99333 0.91800 1.11662 1.19421 0.93194 0.94223 0.99216 1.20821 0.98976 0.95180 1.01958 1.19450 0.92752 0.95216 1.05918 1.20730 1.00163 0.93701 1.01765 1.20979 1.00023 0.90030 0.97731 1.18244 0.89449 0.92909 1.04474 1.18971 0.89815 0.90218 0.98739 1.21831 0.93003 0.98094 1.14921 1.17726 0.93478 0.90555 0.86453 1.19533 0.90899 1.01463 1.37117 0.90175 1.25946 1.01233 0.94591 0.92289 1.69769 1.38871 1.09938 1.22705 0.86322 0.81563 0.78547 0.80052 1.18716 1.20237 1.18883 1.22285 0.93840 0.99524 1.07617 1.22001 0.91886 0.94776 0.98243 1.67467 1.39887 0.97032 1.20527 0.88767 0.93610 0.93600 0.85990 0.91452 0.92096 0.91224 0.91813 0.91828 0.91760 0.84954 0.87961 0.90600 0.85666 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 101.05 0.99 1.29 16 2 O -0.26 -5.08 8.32 -19.15 -0.16 -5.24 16 3 C 0.15 2.88 6.69 -38.85 -0.26 2.62 16 4 C -0.22 -3.43 8.68 -39.47 -0.34 -3.77 16 5 C -0.06 -0.87 5.88 -104.58 -0.62 -1.48 16 6 C -0.11 -1.17 9.60 36.01 0.35 -0.83 16 7 C -0.13 -2.03 5.88 -104.65 -0.61 -2.64 16 8 C -0.11 -1.24 9.59 36.00 0.35 -0.90 16 9 C -0.07 -1.25 9.06 -39.27 -0.36 -1.60 16 10 C -0.05 -1.04 5.89 -104.77 -0.62 -1.66 16 11 C 0.16 3.86 6.73 -83.05 -0.56 3.30 16 12 C -0.26 -6.44 9.25 -38.34 -0.35 -6.80 16 13 C 0.13 3.39 5.61 -106.56 -0.60 2.80 16 14 C -0.46 -12.08 9.12 -37.66 -0.34 -12.42 16 15 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 16 C 0.08 1.95 5.20 -17.34 -0.09 1.86 16 17 N -0.79 -20.11 10.90 55.55 0.61 -19.50 16 18 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 16 19 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.28 -5.43 7.11 56.52 0.40 -5.02 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 22 C -0.21 -5.56 8.80 -38.67 -0.34 -5.90 16 23 C 0.08 2.09 11.15 -17.70 -0.20 1.89 16 24 N -0.54 -13.54 8.11 -9.95 -0.08 -13.62 16 25 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 27 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 28 H 0.12 1.58 6.30 -52.48 -0.33 1.25 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.56 8.08 -51.93 -0.42 0.15 16 31 H 0.07 0.64 5.91 -51.93 -0.31 0.33 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.06 0.63 5.92 -51.93 -0.31 0.32 16 35 H 0.13 2.31 6.18 -52.49 -0.32 1.99 16 36 H 0.10 2.36 6.19 -52.48 -0.32 2.04 16 37 H 0.28 6.56 8.29 -40.82 -0.34 6.22 16 38 H 0.13 3.34 6.16 -52.49 -0.32 3.01 16 39 H 0.12 2.63 8.06 -52.48 -0.42 2.21 16 LS Contribution 321.98 15.07 4.85 4.85 Total: -1.00 -30.14 321.98 -8.21 -38.35 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -4.79 Total: 6.11 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -3.60 Total: -24.25 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.52 Total: -33.12 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.16 Total: -5.24 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.14 -8.21 -38.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245017842.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.730 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds