Wall clock time and date at job start Tue Mar 31 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35755 * 117.00351 * 2 1 4 4 C 1.38593 * 120.13874 * 0.27251 * 3 2 1 5 5 C 1.38164 * 120.08334 * 180.28989 * 4 3 2 6 6 C 1.50707 * 119.81404 * 179.72728 * 5 4 3 7 7 C 1.38524 * 120.37369 * 359.45569 * 5 4 3 8 8 C 1.50699 * 119.86304 * 180.26915 * 7 5 4 9 9 C 1.37847 * 120.28185 * 0.25489 * 7 5 4 10 10 C 1.39650 * 119.90874 * 0.02562 * 9 7 5 11 11 C 1.47801 * 120.18338 * 180.02562 * 10 9 7 12 12 C 1.39982 * 119.45759 * 359.73257 * 11 10 9 13 13 C 1.36550 * 119.45859 * 179.72150 * 12 11 10 14 14 C 1.41329 * 118.42706 * 0.53870 * 13 12 11 15 15 C 1.41018 * 120.55128 * 179.70166 * 14 13 12 16 16 H 1.08007 * 119.99730 * 330.35232 * 15 14 13 17 17 C 1.39994 * 120.00391 * 150.34881 * 15 14 13 18 18 N 1.30810 * 120.00213 * 161.80368 * 17 15 14 19 19 Si 1.86802 * 119.99829 * 341.80516 * 17 15 14 20 20 H 1.48494 * 109.47345 * 95.40772 * 19 17 15 21 21 H 1.48508 * 109.47122 * 215.40956 * 19 17 15 22 22 H 1.48498 * 109.47160 * 335.40473 * 19 17 15 23 23 C 1.40951 * 118.90325 * 359.72621 * 14 13 12 24 24 N 1.31265 * 120.40742 * 359.97438 * 23 14 13 25 25 H 1.08998 * 109.47119 * 300.00293 * 1 2 3 26 26 H 1.08999 * 109.47132 * 59.99734 * 1 2 3 27 27 H 1.09001 * 109.47331 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.96122 * 0.02562 * 4 3 2 29 29 H 1.09003 * 109.46843 * 269.72866 * 6 5 4 30 30 H 1.08996 * 109.46829 * 149.73307 * 6 5 4 31 31 H 1.08998 * 109.47059 * 29.73175 * 6 5 4 32 32 H 1.09003 * 109.46835 * 89.99813 * 8 7 5 33 33 H 1.08995 * 109.47348 * 210.00295 * 8 7 5 34 34 H 1.09003 * 109.46617 * 330.00363 * 8 7 5 35 35 H 1.08002 * 120.04819 * 180.02562 * 9 7 5 36 36 H 1.07998 * 120.26651 * 359.97438 * 12 11 10 37 37 H 1.08008 * 120.78429 * 180.25799 * 13 12 11 38 38 H 0.97002 * 119.99594 * 180.02562 * 18 17 15 39 39 H 1.07994 * 119.80010 * 179.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2095 0.0000 4 6 1.2934 2.3737 0.0057 5 6 1.9219 3.6042 -0.0004 6 6 1.0983 4.8663 -0.0003 7 6 3.3048 3.6843 -0.0008 8 6 3.9783 5.0324 -0.0013 9 6 4.0676 2.5361 -0.0005 10 6 3.4447 1.2863 -0.0003 11 6 4.2566 0.0513 0.0007 12 6 5.6533 0.1456 -0.0044 13 6 6.4035 -0.9953 0.0022 14 6 5.7346 -2.2403 0.0024 15 6 6.4652 -3.4465 0.0027 16 1 7.4403 -3.4873 -0.4598 17 6 5.9266 -4.5910 0.6026 18 7 6.4081 -5.7713 0.3095 19 14 4.5200 -4.4325 1.8217 20 1 3.2289 -4.6367 1.1171 21 1 4.6702 -5.4566 2.8867 22 1 4.5429 -3.0783 2.4306 23 6 4.3252 -2.2565 0.0016 24 7 3.6479 -1.1320 0.0012 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2148 2.3192 0.0106 29 1 0.8994 5.1703 -1.0280 30 1 1.6452 5.6570 0.5131 31 1 0.1546 4.6842 0.5138 32 1 4.1410 5.3576 1.0263 33 1 4.9367 4.9596 -0.5154 34 1 3.3443 5.7550 -0.5151 35 1 5.1456 2.6030 -0.0004 36 1 6.1335 1.1130 -0.0093 37 1 7.4825 -0.9474 0.0027 38 1 6.0346 -6.5643 0.7250 39 1 3.7993 -3.1997 0.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245021602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:30 Heat of formation + Delta-G solvation = 6.015029 kcal Electronic energy + Delta-G solvation = -21523.692693 eV Core-core repulsion = 18395.876573 eV Total energy + Delta-G solvation = -3127.816121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.92735 -38.36527 -37.41550 -34.25280 -32.91022 -31.60681 -31.23956 -30.18695 -27.68448 -27.31965 -25.81615 -24.30620 -22.66141 -21.67313 -20.99440 -19.76362 -17.75150 -17.27662 -16.07357 -15.96058 -15.26619 -15.19939 -14.41946 -14.12699 -13.97319 -13.88794 -13.72425 -13.36055 -13.03971 -12.79326 -12.71420 -12.30495 -12.18070 -11.92127 -11.76738 -11.73244 -11.47031 -11.10238 -11.05856 -10.95518 -10.51057 -10.44969 -10.31449 -10.03290 -9.45905 -8.72219 -8.54719 -8.03853 -7.89462 -7.17420 -7.10635 -4.61337 1.40761 1.82598 2.57451 2.68212 3.07161 3.16512 3.25703 3.83029 3.85864 4.04345 4.57234 4.95838 5.03299 5.16135 5.28069 5.36866 5.41024 5.42681 5.45196 5.61038 5.62785 5.72835 5.74195 5.79594 5.86372 5.88589 5.99958 6.12404 6.24893 6.30560 6.44695 6.55751 6.68093 6.77271 6.90178 6.94294 7.11554 7.19778 7.43080 7.53058 7.85532 8.00275 8.07384 8.37990 8.51505 9.46791 9.82217 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.024775 B = 0.004811 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.910940 B = 5818.023380 C = 6717.968342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.267 6.267 3 C 0.132 3.868 4 C -0.209 4.209 5 C -0.076 4.076 6 C -0.109 4.109 7 C -0.124 4.124 8 C -0.105 4.105 9 C -0.093 4.093 10 C -0.018 4.018 11 C 0.001 3.999 12 C -0.107 4.107 13 C -0.185 4.185 14 C 0.045 3.955 15 C -0.420 4.420 16 H 0.096 0.904 17 C 0.083 3.917 18 N -0.789 5.789 19 Si 0.911 3.089 20 H -0.262 1.262 21 H -0.286 1.286 22 H -0.245 1.245 23 C -0.028 4.028 24 N -0.411 5.411 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.291 0.709 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.346 14.109 0.768 16.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.178 6.178 3 C 0.085 3.915 4 C -0.228 4.228 5 C -0.077 4.077 6 C -0.165 4.165 7 C -0.124 4.124 8 C -0.162 4.162 9 C -0.112 4.112 10 C -0.020 4.020 11 C -0.132 4.132 12 C -0.127 4.127 13 C -0.210 4.210 14 C 0.040 3.960 15 C -0.447 4.447 16 H 0.114 0.886 17 C -0.139 4.139 18 N -0.411 5.411 19 Si 0.737 3.263 20 H -0.188 1.188 21 H -0.213 1.213 22 H -0.168 1.168 23 C -0.194 4.194 24 N -0.118 5.118 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.112 0.888 28 H 0.138 0.862 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.101 0.899 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.094 13.597 0.769 16.376 hybrid contribution 0.167 -0.146 0.475 0.524 sum -8.928 13.451 1.244 16.192 Atomic orbital electron populations 1.23000 0.80938 1.03260 1.00114 1.86538 1.18638 1.25229 1.87412 1.19106 0.91631 0.84305 0.96452 1.20917 0.99221 0.91821 1.10803 1.19366 0.93126 0.94130 1.01028 1.20747 0.98919 0.95149 1.01732 1.19400 0.92751 0.95041 1.05243 1.20691 1.00043 0.93845 1.01624 1.20831 0.99446 0.90107 1.00850 1.18067 0.89243 0.92423 1.02247 1.18693 0.89489 0.90050 1.15015 1.21271 0.94086 0.97891 0.99449 1.21004 0.98630 0.91948 1.09393 1.18724 0.93229 0.93782 0.90259 1.19529 1.04499 0.91330 1.29384 0.88624 1.26269 0.97082 0.94166 0.96388 1.69670 1.37794 0.99325 1.34340 0.86308 0.80217 0.79994 0.79823 1.18759 1.21285 1.16822 1.22498 0.91157 0.94915 1.10806 1.67140 1.40559 0.97566 1.06542 0.93631 0.93590 0.88804 0.86171 0.91677 0.91591 0.92187 0.91901 0.91967 0.91956 0.85556 0.87588 0.87148 0.89863 0.85227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 101.05 0.99 1.31 16 2 O -0.27 -5.25 8.31 -18.97 -0.16 -5.41 16 3 C 0.13 2.52 6.70 -38.74 -0.26 2.26 16 4 C -0.21 -3.27 8.67 -39.48 -0.34 -3.61 16 5 C -0.08 -1.08 5.88 -104.54 -0.62 -1.70 16 6 C -0.11 -1.13 9.18 36.01 0.33 -0.80 16 7 C -0.12 -1.81 5.88 -104.66 -0.61 -2.43 16 8 C -0.11 -1.15 9.18 36.01 0.33 -0.82 16 9 C -0.09 -1.58 9.05 -39.20 -0.35 -1.94 16 10 C -0.02 -0.37 5.89 -104.75 -0.62 -0.99 16 11 C 0.00 0.03 6.74 -82.77 -0.56 -0.53 16 12 C -0.11 -2.32 9.38 -39.54 -0.37 -2.69 16 13 C -0.18 -4.28 9.87 -39.02 -0.39 -4.66 16 14 C 0.05 1.15 5.12 -106.64 -0.55 0.60 16 15 C -0.42 -10.96 9.58 -37.87 -0.36 -11.32 16 16 H 0.10 2.57 8.06 -52.48 -0.42 2.14 16 17 C 0.08 2.09 5.41 -17.33 -0.09 2.00 16 18 N -0.79 -20.04 13.93 55.55 0.77 -19.26 16 19 Si 0.91 20.58 24.52 -169.99 -4.17 16.41 16 20 H -0.26 -5.80 6.71 56.52 0.38 -5.43 16 21 H -0.29 -6.12 7.11 56.52 0.40 -5.71 16 22 H -0.25 -5.89 6.86 56.52 0.39 -5.50 16 23 C -0.03 -0.73 8.36 -16.77 -0.14 -0.87 16 24 N -0.41 -10.36 8.10 -9.12 -0.07 -10.43 16 25 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 26 H 0.05 0.56 7.67 -51.93 -0.40 0.16 16 27 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.12 1.58 6.30 -52.49 -0.33 1.25 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.60 6.68 -51.93 -0.35 0.26 16 31 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.06 0.59 6.68 -51.93 -0.35 0.24 16 35 H 0.13 1.94 6.15 -52.49 -0.32 1.61 16 36 H 0.11 1.92 6.15 -52.49 -0.32 1.60 16 37 H 0.11 2.32 8.06 -52.48 -0.42 1.90 16 38 H 0.29 6.64 8.30 -40.82 -0.34 6.30 16 39 H 0.13 3.27 4.72 -52.49 -0.25 3.02 16 LS Contribution 317.23 15.07 4.78 4.78 Total: -1.00 -29.32 317.23 -7.29 -36.61 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.84 Total: 3.48 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -3.61 Total: -26.18 kcal Atomic # 7 Polarization: -30.39 SS G_CDS: 0.70 Total: -29.69 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.16 Total: -5.41 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.17 Total: 16.41 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.32 -7.29 -36.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245021602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.624 kcal (2) G-P(sol) polarization free energy of solvation -29.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds