Wall clock time and date at job start Tue Mar 31 2020 05:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35763 * 117.00165 * 2 1 4 4 C 1.38555 * 120.14545 * 0.29433 * 3 2 1 5 5 C 1.38198 * 120.08858 * 180.27714 * 4 3 2 6 6 C 1.50697 * 119.80622 * 179.72494 * 5 4 3 7 7 C 1.38529 * 120.38074 * 359.44489 * 5 4 3 8 8 C 1.50703 * 119.85206 * 180.27743 * 7 5 4 9 9 C 1.37845 * 120.28889 * 0.25663 * 7 5 4 10 10 C 1.39685 * 119.89918 * 0.02562 * 9 7 5 11 11 C 1.47702 * 120.18476 * 180.02562 * 10 9 7 12 12 C 1.39403 * 120.79341 * 64.99373 * 11 10 9 13 13 N 1.31638 * 120.65114 * 180.02562 * 12 11 10 14 14 C 1.32237 * 122.51138 * 0.02562 * 13 12 11 15 15 C 1.36448 * 121.53263 * 0.02562 * 14 13 12 16 16 C 1.41139 * 119.11109 * 359.68388 * 15 14 13 17 17 C 1.40867 * 121.11412 * 180.32062 * 16 15 14 18 18 H 1.08000 * 120.00054 * 204.87165 * 17 16 15 19 19 C 1.40166 * 120.00143 * 24.86477 * 17 16 15 20 20 N 1.30701 * 119.99655 * 13.73743 * 19 17 16 21 21 Si 1.86801 * 120.00376 * 193.73513 * 19 17 16 22 22 H 1.48501 * 109.46862 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46650 * 119.99883 * 21 19 17 24 24 H 1.48497 * 109.47152 * 240.00274 * 21 19 17 25 25 H 1.09006 * 109.46863 * 300.00208 * 1 2 3 26 26 H 1.09000 * 109.46704 * 59.99769 * 1 2 3 27 27 H 1.08993 * 109.47249 * 179.97438 * 1 2 3 28 28 H 1.07995 * 119.95835 * 0.02562 * 4 3 2 29 29 H 1.08999 * 109.47120 * 269.72340 * 6 5 4 30 30 H 1.09004 * 109.47034 * 149.72192 * 6 5 4 31 31 H 1.09000 * 109.47467 * 29.72773 * 6 5 4 32 32 H 1.08998 * 109.47504 * 90.00628 * 8 7 5 33 33 H 1.09008 * 109.46903 * 210.00113 * 8 7 5 34 34 H 1.08996 * 109.47473 * 329.99783 * 8 7 5 35 35 H 1.07997 * 120.04693 * 180.02562 * 9 7 5 36 36 H 1.08004 * 119.67615 * 0.03200 * 12 11 10 37 37 H 1.08001 * 119.23470 * 180.02562 * 14 13 12 38 38 H 1.07997 * 120.44074 * 179.97438 * 15 14 13 39 39 H 0.96998 * 120.00263 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 1.2938 2.3736 0.0062 5 6 1.9224 3.6043 0.0004 6 6 1.0987 4.8662 0.0008 7 6 3.3054 3.6846 0.0000 8 6 3.9785 5.0330 0.0000 9 6 4.0685 2.5367 0.0000 10 6 3.4454 1.2864 -0.0001 11 6 4.2569 0.0523 0.0006 12 6 5.0715 -0.2657 1.0863 13 7 5.7939 -1.3661 1.0837 14 6 5.7897 -2.2167 0.0712 15 6 5.0285 -1.9994 -1.0402 16 6 4.2229 -0.8423 -1.1052 17 6 3.4155 -0.5797 -2.2293 18 1 3.1305 0.4352 -2.4642 19 6 2.9823 -1.6354 -3.0431 20 7 3.0916 -2.8693 -2.6261 21 14 2.2487 -1.2791 -4.7237 22 1 2.2371 0.1873 -4.9579 23 1 3.0672 -1.9407 -5.7714 24 1 0.8594 -1.8005 -4.7780 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2152 2.3190 0.0114 29 1 0.8997 5.1706 -1.0267 30 1 1.6455 5.6569 0.5147 31 1 0.1550 4.6840 0.5150 32 1 4.1412 5.3579 1.0276 33 1 4.9369 4.9606 -0.5142 34 1 3.3444 5.7557 -0.5136 35 1 5.1463 2.6038 0.0001 36 1 5.1101 0.3973 1.9380 37 1 6.4030 -3.1040 0.1252 38 1 5.0388 -2.7057 -1.8571 39 1 2.7922 -3.6000 -3.1894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245022193.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:56 Heat of formation + Delta-G solvation = 0.493915 kcal Electronic energy + Delta-G solvation = -22230.896205 eV Core-core repulsion = 19102.840671 eV Total energy + Delta-G solvation = -3128.055534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.71427 -38.01576 -37.22424 -34.11702 -33.09195 -31.33564 -30.36686 -29.39849 -27.35211 -26.87108 -25.84057 -24.77479 -22.04737 -21.35742 -21.00627 -19.49309 -17.54426 -16.91288 -15.87406 -15.54170 -15.05820 -14.88789 -14.42331 -14.18080 -13.78360 -13.66512 -13.54685 -13.22323 -12.64969 -12.60705 -12.34725 -12.19554 -11.91225 -11.77250 -11.59866 -11.43584 -11.38405 -11.20800 -10.99888 -10.82226 -10.44630 -10.21346 -10.12848 -9.67023 -9.43559 -8.32389 -7.92641 -7.83140 -7.57584 -7.10338 -6.77015 -4.52653 1.85217 2.05067 2.73635 2.88229 3.00599 3.06572 3.28111 3.85050 4.01461 4.31319 4.69344 5.14083 5.24983 5.40232 5.49980 5.52637 5.58714 5.60251 5.74117 5.75507 5.87376 5.88265 5.91528 5.97493 6.00277 6.12433 6.24234 6.30650 6.41869 6.71119 6.87882 6.91950 6.99242 7.02807 7.16680 7.25565 7.42854 7.46169 7.59182 7.89134 8.15998 8.20722 8.50532 8.76781 8.82230 9.69776 10.07273 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.007557 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.299339 B = 3704.187345 C = 4663.061279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.279 6.279 3 C 0.145 3.855 4 C -0.215 4.215 5 C -0.072 4.072 6 C -0.109 4.109 7 C -0.133 4.133 8 C -0.104 4.104 9 C -0.083 4.083 10 C -0.010 4.010 11 C -0.220 4.220 12 C 0.125 3.875 13 N -0.580 5.580 14 C 0.079 3.921 15 C -0.210 4.210 16 C 0.151 3.849 17 C -0.424 4.424 18 H 0.078 0.922 19 C 0.079 3.921 20 N -0.781 5.781 21 Si 0.904 3.096 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.273 1.273 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.092 0.908 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.249 9.551 1.060 10.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.191 6.191 3 C 0.098 3.902 4 C -0.234 4.234 5 C -0.072 4.072 6 C -0.165 4.165 7 C -0.133 4.133 8 C -0.160 4.160 9 C -0.101 4.101 10 C -0.011 4.011 11 C -0.226 4.226 12 C -0.033 4.033 13 N -0.295 5.295 14 C -0.069 4.069 15 C -0.232 4.232 16 C 0.143 3.857 17 C -0.454 4.454 18 H 0.096 0.904 19 C -0.141 4.141 20 N -0.406 5.406 21 Si 0.728 3.272 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.198 1.198 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.110 0.890 28 H 0.136 0.864 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.145 0.855 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.672 8.864 1.707 10.164 hybrid contribution -1.339 0.206 -1.603 2.099 sum -6.012 9.070 0.103 10.882 Atomic orbital electron populations 1.22929 0.80536 1.03154 1.00028 1.86350 1.19146 1.26020 1.87543 1.19218 0.91883 0.83890 0.95173 1.20892 0.99105 0.91947 1.11486 1.19338 0.93099 0.94011 1.00723 1.20743 0.98863 0.95243 1.01672 1.19414 0.92763 0.95059 1.06056 1.20671 1.00005 0.93996 1.01370 1.20967 0.99170 0.90341 0.99604 1.18006 0.89139 0.93152 1.00839 1.19303 1.06723 0.98879 0.97659 1.22025 0.92405 0.93507 0.95349 1.67283 1.26435 1.05772 1.30007 1.21675 0.97693 0.96775 0.90781 1.21942 0.99835 1.01452 0.99968 1.17678 0.88483 0.89321 0.90195 1.19439 1.25169 0.94383 1.06433 0.90376 1.25964 0.94274 0.94462 0.99361 1.69761 1.34687 1.00041 1.36068 0.86309 0.79047 0.80246 0.81559 1.18233 1.19515 1.19829 0.93776 0.93435 0.88984 0.86408 0.91750 0.91692 0.92280 0.92113 0.92096 0.92139 0.86075 0.86453 0.86686 0.85524 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.81 101.05 0.99 1.46 16 2 O -0.28 -6.06 9.10 -19.00 -0.17 -6.23 16 3 C 0.14 3.01 6.04 -38.72 -0.23 2.78 16 4 C -0.22 -3.77 8.67 -39.48 -0.34 -4.11 16 5 C -0.07 -1.14 5.89 -104.53 -0.62 -1.76 16 6 C -0.11 -1.29 9.18 36.00 0.33 -0.96 16 7 C -0.13 -2.18 5.88 -104.66 -0.61 -2.79 16 8 C -0.10 -1.31 9.18 36.01 0.33 -0.98 16 9 C -0.08 -1.57 9.40 -39.19 -0.37 -1.94 16 10 C -0.01 -0.22 4.50 -104.75 -0.47 -0.69 16 11 C -0.22 -5.41 5.00 -104.05 -0.52 -5.94 16 12 C 0.12 3.00 10.92 -17.20 -0.19 2.82 16 13 N -0.58 -14.55 10.32 -13.35 -0.14 -14.69 16 14 C 0.08 1.95 11.08 -18.02 -0.20 1.75 16 15 C -0.21 -5.47 8.72 -39.13 -0.34 -5.81 16 16 C 0.15 4.00 5.44 -106.25 -0.58 3.42 16 17 C -0.42 -10.98 7.53 -37.86 -0.29 -11.26 16 18 H 0.08 2.04 7.18 -52.49 -0.38 1.67 16 19 C 0.08 1.94 5.25 -17.31 -0.09 1.85 16 20 N -0.78 -19.56 10.81 55.56 0.60 -18.95 16 21 Si 0.90 18.40 29.58 -169.99 -5.03 13.37 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 25 H 0.04 0.60 7.65 -51.93 -0.40 0.20 16 26 H 0.05 0.70 7.68 -51.93 -0.40 0.30 16 27 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.12 1.77 6.30 -52.49 -0.33 1.44 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.68 6.68 -51.93 -0.35 0.33 16 31 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.73 8.08 -51.92 -0.42 0.32 16 34 H 0.06 0.67 6.68 -51.93 -0.35 0.32 16 35 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 36 H 0.12 2.53 8.06 -52.48 -0.42 2.11 16 37 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 38 H 0.13 3.34 6.15 -52.49 -0.32 3.02 16 39 H 0.28 6.38 8.29 -40.82 -0.34 6.04 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -29.30 324.99 -8.07 -37.36 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.03 Total: 6.41 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -3.20 Total: -22.17 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.46 Total: -33.65 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.17 Total: -6.23 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.30 -8.07 -37.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245022193.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.858 kcal (2) G-P(sol) polarization free energy of solvation -29.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds