Wall clock time and date at job start Tue Mar 31 2020 05:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35769 * 116.99936 * 2 1 4 4 C 1.38565 * 120.13898 * 0.02562 * 3 2 1 5 5 C 1.38192 * 120.08276 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.81196 * 179.97438 * 5 4 3 7 7 C 1.38519 * 120.37148 * 0.25173 * 5 4 3 8 8 C 1.50704 * 119.85891 * 179.72599 * 7 5 4 9 9 C 1.37851 * 120.28327 * 359.44488 * 7 5 4 10 10 C 1.39646 * 119.90713 * 0.57656 * 9 7 5 11 11 C 1.47814 * 120.18399 * 179.72676 * 10 9 7 12 12 C 1.40344 * 120.35362 * 309.69403 * 11 10 9 13 13 C 1.36629 * 118.60614 * 179.77639 * 12 11 10 14 14 C 1.40908 * 119.25985 * 0.50055 * 13 12 11 15 15 C 1.40938 * 119.67338 * 179.71519 * 14 13 12 16 16 H 1.08003 * 119.99796 * 0.02562 * 15 14 13 17 17 C 1.40076 * 120.00083 * 180.02562 * 15 14 13 18 18 N 1.30734 * 119.99935 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00229 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46782 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46814 * 120.00044 * 19 17 15 22 22 H 1.48496 * 109.47060 * 240.00167 * 19 17 15 23 23 N 1.33797 * 120.65360 * 359.74379 * 14 13 12 24 24 C 1.31177 * 121.50541 * 359.97438 * 23 14 13 25 25 H 1.08996 * 109.47501 * 59.99826 * 1 2 3 26 26 H 1.09001 * 109.47032 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47242 * 299.99062 * 1 2 3 28 28 H 1.07994 * 119.96108 * 359.97438 * 4 3 2 29 29 H 1.09002 * 109.47152 * 90.00051 * 6 5 4 30 30 H 1.09001 * 109.46980 * 330.00152 * 6 5 4 31 31 H 1.09004 * 109.47113 * 210.00133 * 6 5 4 32 32 H 1.09005 * 109.47366 * 89.99657 * 8 7 5 33 33 H 1.08998 * 109.47182 * 209.99702 * 8 7 5 34 34 H 1.09000 * 109.47059 * 329.99792 * 8 7 5 35 35 H 1.08008 * 120.05196 * 180.27673 * 9 7 5 36 36 H 1.07999 * 120.69432 * 0.02562 * 12 11 10 37 37 H 1.07995 * 120.37147 * 180.26287 * 13 12 11 38 38 H 0.97006 * 119.99764 * 180.02562 * 18 17 15 39 39 H 1.07998 * 119.65806 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2935 2.3736 0.0005 5 6 1.9220 3.6043 0.0011 6 6 1.0983 4.8663 0.0011 7 6 3.3049 3.6845 -0.0042 8 6 3.9783 5.0327 -0.0098 9 6 4.0678 2.5363 0.0015 10 6 3.4449 1.2865 0.0005 11 6 4.2569 0.0514 0.0005 12 6 5.2935 -0.1158 -0.9307 13 6 6.0246 -1.2696 -0.8956 14 6 5.7106 -2.2550 0.0614 15 6 6.4551 -3.4510 0.1014 16 1 7.2620 -3.6085 -0.5990 17 6 6.1486 -4.4355 1.0496 18 7 5.1716 -4.2450 1.8971 19 14 7.1359 -6.0204 1.1031 20 1 8.1788 -5.9898 0.0465 21 1 7.7828 -6.1559 2.4329 22 1 6.2311 -7.1752 0.8729 23 7 4.7124 -2.0668 0.9322 24 6 3.9964 -0.9677 0.9270 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8901 28 1 0.2149 2.3190 0.0005 29 1 0.8994 5.1704 1.0287 30 1 0.1546 4.6842 -0.5131 31 1 1.6452 5.6572 -0.5124 32 1 4.1444 5.3602 1.0165 33 1 4.9350 4.9588 -0.5269 34 1 3.3426 5.7542 -0.5230 35 1 5.1458 2.6032 0.0019 36 1 5.5115 0.6531 -1.6570 37 1 6.8315 -1.4262 -1.5961 38 1 4.9596 -4.9267 2.5540 39 1 3.1971 -0.8472 1.6433 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245022507.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:41 Heat of formation + Delta-G solvation = 7.861086 kcal Electronic energy + Delta-G solvation = -21350.383364 eV Core-core repulsion = 18222.647294 eV Total energy + Delta-G solvation = -3127.736070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.89663 -37.95237 -37.45829 -34.00990 -32.75744 -31.51114 -30.51247 -29.75683 -27.66522 -27.18219 -25.86779 -24.39307 -22.06919 -21.60618 -20.98603 -19.70257 -17.47871 -17.18414 -16.07699 -15.60009 -15.29809 -15.04928 -14.21045 -14.10809 -13.96554 -13.83170 -13.71823 -13.36557 -12.71875 -12.56116 -12.38139 -12.06749 -11.96496 -11.78563 -11.73713 -11.54684 -11.22584 -11.12593 -10.99970 -10.93392 -10.62615 -10.38049 -10.20716 -9.84837 -9.41886 -8.51796 -8.17439 -7.79974 -7.52288 -7.08679 -6.42001 -4.50888 1.64902 1.83990 2.76468 3.07140 3.11582 3.14046 3.18660 3.74744 3.91279 4.15447 4.74145 4.99014 5.12576 5.20862 5.31095 5.33099 5.36995 5.50132 5.57812 5.69034 5.79008 5.82384 5.90644 5.95579 6.02935 6.05749 6.13939 6.18199 6.23851 6.53508 6.68707 6.76454 6.85254 6.93461 7.02411 7.10048 7.26661 7.44245 7.59891 7.80060 7.94713 8.05358 8.22039 8.62829 8.92287 10.12699 10.28403 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027478 B = 0.004097 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.761861 B = 6832.492232 C = 7543.112632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.299 6.299 3 C 0.115 3.885 4 C -0.203 4.203 5 C -0.080 4.080 6 C -0.110 4.110 7 C -0.123 4.123 8 C -0.108 4.108 9 C -0.090 4.090 10 C -0.008 4.008 11 C -0.265 4.265 12 C -0.037 4.037 13 C -0.276 4.276 14 C 0.255 3.745 15 C -0.420 4.420 16 H 0.085 0.915 17 C 0.066 3.934 18 N -0.706 5.706 19 Si 0.908 3.092 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.272 1.272 23 N -0.489 5.489 24 C 0.167 3.833 25 H 0.047 0.953 26 H 0.095 0.905 27 H 0.049 0.951 28 H 0.119 0.881 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.273 0.727 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.922 11.592 -2.013 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.211 6.211 3 C 0.070 3.930 4 C -0.222 4.222 5 C -0.080 4.080 6 C -0.167 4.167 7 C -0.123 4.123 8 C -0.164 4.164 9 C -0.109 4.109 10 C -0.009 4.009 11 C -0.270 4.270 12 C -0.060 4.060 13 C -0.298 4.298 14 C 0.131 3.869 15 C -0.451 4.451 16 H 0.103 0.897 17 C -0.160 4.160 18 N -0.326 5.326 19 Si 0.732 3.268 20 H -0.183 1.183 21 H -0.197 1.197 22 H -0.197 1.197 23 N -0.201 5.201 24 C 0.000 4.000 25 H 0.066 0.934 26 H 0.113 0.887 27 H 0.067 0.933 28 H 0.137 0.863 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.141 0.859 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.082 10.577 -1.243 12.789 hybrid contribution 0.219 0.085 -0.605 0.648 sum -6.863 10.662 -1.848 12.814 Atomic orbital electron populations 1.22968 0.79839 1.03438 1.00451 1.86229 1.19885 1.26567 1.88446 1.19188 0.91906 0.83857 0.98035 1.20878 0.99106 0.91838 1.10403 1.19333 0.93121 0.94088 1.01486 1.20781 0.98873 0.95247 1.01771 1.19479 0.92809 0.95175 1.04820 1.20742 1.00026 0.93972 1.01687 1.20977 0.99331 0.90304 1.00269 1.18239 0.88940 0.93638 1.00115 1.18856 1.04497 0.97011 1.06619 1.20560 0.93648 0.96069 0.95764 1.21373 1.05250 0.97534 1.05639 1.18647 0.89238 0.91915 0.87093 1.19698 1.13394 0.98723 1.13277 0.89688 1.26144 0.94991 1.00123 0.94753 1.70162 1.20549 1.31599 1.10317 0.86261 0.80319 0.80978 0.79240 1.18321 1.19739 1.19745 1.68803 1.07401 1.19413 1.24453 1.22634 0.95171 0.88452 0.93775 0.93399 0.88662 0.93255 0.86279 0.91689 0.92288 0.91446 0.91871 0.92052 0.91828 0.85911 0.88824 0.88375 0.91526 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.30 -5.63 8.86 -19.02 -0.17 -5.80 16 3 C 0.12 2.15 6.61 -38.74 -0.26 1.90 16 4 C -0.20 -3.16 8.67 -39.48 -0.34 -3.50 16 5 C -0.08 -1.15 5.89 -104.53 -0.62 -1.77 16 6 C -0.11 -1.17 9.60 36.01 0.35 -0.82 16 7 C -0.12 -1.85 5.88 -104.66 -0.61 -2.46 16 8 C -0.11 -1.24 9.59 36.01 0.35 -0.89 16 9 C -0.09 -1.59 9.19 -39.20 -0.36 -1.95 16 10 C -0.01 -0.16 5.50 -104.73 -0.58 -0.73 16 11 C -0.26 -6.19 5.31 -104.46 -0.55 -6.75 16 12 C -0.04 -0.85 9.61 -39.37 -0.38 -1.23 16 13 C -0.28 -6.90 9.76 -39.15 -0.38 -7.28 16 14 C 0.25 7.09 6.55 -84.98 -0.56 6.53 16 15 C -0.42 -11.30 9.12 -37.87 -0.35 -11.65 16 16 H 0.08 2.13 7.85 -52.48 -0.41 1.71 16 17 C 0.07 1.69 5.50 -17.33 -0.10 1.59 16 18 N -0.71 -18.89 11.44 55.55 0.64 -18.26 16 19 Si 0.91 18.48 29.56 -169.99 -5.03 13.45 16 20 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 N -0.49 -13.85 7.83 -10.83 -0.08 -13.93 16 24 C 0.17 4.29 9.97 -17.11 -0.17 4.12 16 25 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 26 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 28 H 0.12 1.55 6.30 -52.49 -0.33 1.22 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.07 0.63 5.91 -51.93 -0.31 0.32 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.06 0.62 5.92 -51.93 -0.31 0.31 16 35 H 0.12 2.07 8.05 -52.48 -0.42 1.65 16 36 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 37 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 38 H 0.27 6.58 8.29 -40.82 -0.34 6.24 16 39 H 0.12 2.86 7.69 -52.49 -0.40 2.46 16 LS Contribution 327.60 15.07 4.94 4.94 Total: -1.00 -30.56 327.60 -8.34 -38.90 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.07 Total: 4.24 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -3.56 Total: -23.54 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.55 Total: -32.19 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.17 Total: -5.80 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.56 -8.34 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245022507.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.761 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds