Wall clock time and date at job start Tue Mar 31 2020 05:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35813 * 117.00125 * 2 1 4 4 C 1.38605 * 120.12344 * 359.97438 * 3 2 1 5 5 C 1.38162 * 120.06406 * 179.97438 * 4 3 2 6 6 C 1.50703 * 119.84402 * 180.02562 * 5 4 3 7 7 C 1.38409 * 120.31042 * 0.29839 * 5 4 3 8 8 C 1.50698 * 119.87669 * 179.72199 * 7 5 4 9 9 C 1.37984 * 120.24392 * 359.44781 * 7 5 4 10 10 C 1.39330 * 119.92822 * 0.52488 * 9 7 5 11 11 C 1.48297 * 120.15035 * 179.76985 * 10 9 7 12 12 C 1.40079 * 120.82039 * 129.70101 * 11 10 9 13 13 C 1.38473 * 119.41261 * 179.72838 * 12 11 10 14 14 N 1.31496 * 121.15245 * 0.55311 * 13 12 11 15 15 C 1.33649 * 121.80354 * 359.72437 * 14 13 12 16 16 C 1.41438 * 119.77955 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00127 * 179.97438 * 16 15 14 18 18 C 1.40030 * 119.99430 * 359.97438 * 16 15 14 19 19 N 1.30734 * 120.00385 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99606 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46887 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.46967 * 119.99947 * 20 18 16 23 23 H 1.48501 * 109.46951 * 240.00105 * 20 18 16 24 24 C 1.39363 * 120.82279 * 309.97834 * 11 10 9 25 25 H 1.08998 * 109.47342 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47136 * 300.00382 * 1 2 3 27 27 H 1.09005 * 109.46787 * 59.99821 * 1 2 3 28 28 H 1.08001 * 119.96798 * 359.97438 * 4 3 2 29 29 H 1.09002 * 109.47152 * 90.00242 * 6 5 4 30 30 H 1.09001 * 109.46980 * 330.00343 * 6 5 4 31 31 H 1.09004 * 109.47113 * 210.00323 * 6 5 4 32 32 H 1.09005 * 109.46996 * 90.00328 * 8 7 5 33 33 H 1.09000 * 109.47546 * 209.99927 * 8 7 5 34 34 H 1.08997 * 109.47620 * 330.00303 * 8 7 5 35 35 H 1.08001 * 120.03399 * 180.27250 * 9 7 5 36 36 H 1.07999 * 120.29484 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.42320 * 180.25643 * 13 12 11 38 38 H 0.97004 * 120.00235 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.58763 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 1.2932 2.3742 -0.0005 5 6 1.9218 3.6045 0.0000 6 6 1.0989 4.8671 0.0000 7 6 3.3036 3.6830 -0.0052 8 6 3.9790 5.0302 -0.0109 9 6 4.0651 2.5323 0.0006 10 6 3.4418 1.2862 0.0006 11 6 4.2554 0.0464 0.0017 12 6 4.0060 -0.9749 0.9274 13 6 4.7800 -2.1228 0.8985 14 7 5.7518 -2.2661 0.0244 15 6 6.0344 -1.3199 -0.8761 16 6 7.0892 -1.5193 -1.7972 17 1 7.3204 -0.7572 -2.5266 18 6 7.8336 -2.7048 -1.7630 19 7 7.5541 -3.6271 -0.8797 20 14 9.2262 -2.9684 -2.9799 21 1 9.3379 -1.7839 -3.8686 22 1 10.5006 -3.1553 -2.2409 23 1 8.9467 -4.1759 -3.7980 24 6 5.2907 -0.1291 -0.9146 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2146 2.3194 -0.0014 29 1 0.9002 5.1712 1.0277 30 1 0.1551 4.6856 -0.5142 31 1 1.6463 5.6576 -0.5135 32 1 4.1456 5.3574 1.0155 33 1 4.9356 4.9549 -0.5279 34 1 3.3445 5.7526 -0.5241 35 1 5.1432 2.5975 0.0010 36 1 3.2140 -0.8701 1.6541 37 1 4.5852 -2.9120 1.6095 38 1 8.0696 -4.4485 -0.8563 39 1 5.5168 0.6369 -1.6417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245023787.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:51 Heat of formation + Delta-G solvation = 9.876198 kcal Electronic energy + Delta-G solvation = -21355.359352 eV Core-core repulsion = 18227.710664 eV Total energy + Delta-G solvation = -3127.648688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.07926 -37.92344 -37.59862 -33.93738 -33.02087 -31.62566 -30.06536 -29.88024 -27.73628 -26.99544 -25.56821 -25.22532 -22.31766 -21.44914 -20.99464 -19.88227 -17.67071 -16.86575 -16.18946 -15.53249 -15.39891 -14.80940 -14.26316 -14.17244 -14.01252 -13.92705 -13.80279 -13.63631 -12.79057 -12.58149 -12.46369 -12.22831 -12.08860 -11.84236 -11.76807 -11.64437 -11.20065 -11.14557 -11.07311 -10.73428 -10.55299 -10.45953 -10.29317 -9.80813 -9.33321 -8.68933 -8.07126 -7.55598 -7.48386 -7.35413 -6.32355 -4.44148 1.48075 1.69155 2.82868 3.02593 3.13044 3.17470 3.24747 3.58679 3.99738 4.03522 4.82434 4.84865 5.01492 5.08117 5.17932 5.21936 5.25316 5.38490 5.49425 5.56442 5.68992 5.72384 5.81433 5.87534 5.93750 5.99683 6.04560 6.16608 6.33759 6.54245 6.56424 6.67594 6.81486 6.87457 6.99734 7.10916 7.21259 7.40689 7.60582 7.72289 7.85626 8.09539 8.30841 8.73916 9.00183 10.20013 10.40008 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.021174 B = 0.004405 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.049086 B = 6355.429116 C = 7239.624157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.297 6.297 3 C 0.134 3.866 4 C -0.210 4.210 5 C -0.064 4.064 6 C -0.113 4.113 7 C -0.127 4.127 8 C -0.109 4.109 9 C -0.069 4.069 10 C -0.050 4.050 11 C 0.008 3.992 12 C -0.282 4.282 13 C 0.120 3.880 14 N -0.483 5.483 15 C 0.256 3.744 16 C -0.436 4.436 17 H 0.082 0.918 18 C 0.070 3.930 19 N -0.719 5.719 20 Si 0.905 3.095 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.254 4.254 25 H 0.096 0.904 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.123 0.877 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.130 0.870 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.271 0.729 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.569 11.838 1.525 15.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.209 6.209 3 C 0.088 3.912 4 C -0.228 4.228 5 C -0.064 4.064 6 C -0.170 4.170 7 C -0.127 4.127 8 C -0.165 4.165 9 C -0.087 4.087 10 C -0.051 4.051 11 C 0.002 3.998 12 C -0.305 4.305 13 C -0.045 4.045 14 N -0.196 5.196 15 C 0.131 3.869 16 C -0.468 4.468 17 H 0.100 0.900 18 C -0.154 4.154 19 N -0.340 5.340 20 Si 0.729 3.271 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.277 4.277 25 H 0.115 0.885 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.141 0.859 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.148 0.852 36 H 0.112 0.888 37 H 0.135 0.865 38 H 0.082 0.918 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.900 10.667 1.570 14.638 hybrid contribution -0.302 0.648 -0.476 0.859 sum -10.202 11.316 1.094 15.275 Atomic orbital electron populations 1.23007 0.79640 1.03587 1.00626 1.86271 1.20072 1.26354 1.88203 1.19024 0.91575 0.84091 0.96498 1.20910 0.99327 0.91722 1.10874 1.19417 0.93204 0.94245 0.99515 1.20824 0.98986 0.95121 1.02020 1.19521 0.92796 0.95338 1.05085 1.20751 1.00233 0.93667 1.01850 1.20986 0.99845 0.90039 0.97849 1.18426 0.89484 0.94050 1.03132 1.18384 0.94101 0.91505 0.95833 1.21251 1.06421 0.97606 1.05210 1.22425 0.91790 0.94346 0.95945 1.68708 1.16042 1.29920 1.04896 1.18524 0.91241 0.86707 0.90470 1.19610 1.11703 1.01854 1.13638 0.89958 1.26040 0.98018 0.95659 0.95715 1.70151 1.32440 1.04458 1.26991 0.86322 0.80716 0.79277 0.80783 1.18457 1.19881 1.19897 1.21797 1.01282 1.01001 1.03646 0.88517 0.93161 0.93183 0.85900 0.91403 0.92047 0.91163 0.91723 0.91750 0.91663 0.85235 0.88816 0.86495 0.91817 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.30 -5.34 8.93 -19.15 -0.17 -5.51 16 3 C 0.13 2.42 6.62 -38.85 -0.26 2.17 16 4 C -0.21 -3.10 8.68 -39.47 -0.34 -3.44 16 5 C -0.06 -0.88 5.88 -104.59 -0.62 -1.49 16 6 C -0.11 -1.11 9.60 36.01 0.35 -0.77 16 7 C -0.13 -1.86 5.88 -104.65 -0.61 -2.48 16 8 C -0.11 -1.21 9.59 36.00 0.35 -0.86 16 9 C -0.07 -1.21 9.19 -39.27 -0.36 -1.57 16 10 C -0.05 -1.01 5.52 -104.76 -0.58 -1.59 16 11 C 0.01 0.19 5.28 -104.65 -0.55 -0.36 16 12 C -0.28 -6.72 8.92 -38.80 -0.35 -7.07 16 13 C 0.12 3.04 11.17 -17.61 -0.20 2.84 16 14 N -0.48 -13.80 7.85 -11.21 -0.09 -13.88 16 15 C 0.26 7.22 6.55 -85.02 -0.56 6.67 16 16 C -0.44 -12.01 9.14 -37.69 -0.34 -12.36 16 17 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 18 C 0.07 1.84 5.50 -17.35 -0.10 1.74 16 19 N -0.72 -19.67 11.46 55.55 0.64 -19.03 16 20 Si 0.90 19.01 29.56 -169.99 -5.02 13.99 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 C -0.25 -6.50 9.37 -38.33 -0.36 -6.86 16 25 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 27 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 28 H 0.12 1.48 6.30 -52.49 -0.33 1.15 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.07 0.61 5.91 -51.93 -0.31 0.30 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.06 0.61 5.92 -51.93 -0.31 0.30 16 35 H 0.13 2.22 8.05 -52.49 -0.42 1.80 16 36 H 0.09 2.07 7.77 -52.49 -0.41 1.67 16 37 H 0.12 2.65 8.06 -52.49 -0.42 2.23 16 38 H 0.27 6.68 8.29 -40.82 -0.34 6.35 16 39 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 327.94 15.07 4.94 4.94 Total: -1.00 -31.67 327.94 -8.31 -39.98 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.07 Total: 3.63 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -3.54 Total: -24.13 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.55 Total: -32.91 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.17 Total: -5.51 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.67 -8.31 -39.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245023787.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.861 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds