Wall clock time and date at job start Tue Mar 31 2020 05:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35760 * 116.99956 * 2 1 4 4 C 1.38564 * 120.14341 * 0.22727 * 3 2 1 5 5 C 1.38185 * 120.08951 * 180.28130 * 4 3 2 6 6 C 1.50703 * 119.80580 * 179.76702 * 5 4 3 7 7 C 1.38549 * 120.38791 * 359.48392 * 5 4 3 8 8 C 1.50699 * 119.85355 * 180.27758 * 7 5 4 9 9 C 1.37825 * 120.28939 * 0.26082 * 7 5 4 10 10 C 1.39715 * 119.90113 * 0.02562 * 9 7 5 11 11 C 1.47661 * 120.19315 * 180.02562 * 10 9 7 12 12 C 1.39767 * 120.65748 * 64.71121 * 11 10 9 13 13 C 1.38338 * 118.47087 * 179.76320 * 12 11 10 14 14 C 1.39083 * 119.73900 * 0.54628 * 13 12 11 15 15 N 1.31271 * 121.35649 * 359.69690 * 14 13 12 16 16 C 1.33716 * 121.63817 * 0.02562 * 15 14 13 17 17 C 1.40751 * 119.94411 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99908 * 179.97438 * 17 16 15 19 19 C 1.40132 * 120.00263 * 359.97438 * 17 16 15 20 20 N 1.30716 * 119.99810 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00328 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47004 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46904 * 119.99575 * 21 19 17 24 24 H 1.48498 * 109.47347 * 239.99982 * 21 19 17 25 25 H 1.08996 * 109.47163 * 300.00029 * 1 2 3 26 26 H 1.08996 * 109.46880 * 60.01004 * 1 2 3 27 27 H 1.09007 * 109.46710 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.95585 * 0.04264 * 4 3 2 29 29 H 1.09002 * 109.47152 * 269.72115 * 6 5 4 30 30 H 1.09001 * 109.46980 * 149.72215 * 6 5 4 31 31 H 1.09004 * 109.47113 * 29.72196 * 6 5 4 32 32 H 1.09001 * 109.46864 * 90.00612 * 8 7 5 33 33 H 1.09001 * 109.47250 * 210.00378 * 8 7 5 34 34 H 1.08998 * 109.47387 * 330.00216 * 8 7 5 35 35 H 1.07999 * 120.04856 * 179.97438 * 9 7 5 36 36 H 1.08001 * 120.76477 * 0.02918 * 12 11 10 37 37 H 1.08006 * 120.12784 * 180.24893 * 13 12 11 38 38 H 1.07998 * 119.31836 * 179.72820 * 14 13 12 39 39 H 0.96998 * 119.99601 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2936 2.3736 0.0048 5 6 1.9220 3.6043 -0.0011 6 6 1.0981 4.8661 -0.0012 7 6 3.3052 3.6849 -0.0010 8 6 3.9780 5.0333 -0.0011 9 6 4.0684 2.5373 -0.0005 10 6 3.4456 1.2866 -0.0006 11 6 4.2570 0.0529 0.0006 12 6 5.0768 -0.2599 1.0885 13 6 5.8138 -1.4297 1.0440 14 6 5.7332 -2.2538 -0.0735 15 7 4.9643 -1.9492 -1.0928 16 6 4.2246 -0.8353 -1.1053 17 6 3.4120 -0.5439 -2.2170 18 1 2.8139 0.3553 -2.2278 19 6 3.3791 -1.4205 -3.3098 20 7 4.1033 -2.5086 -3.2969 21 14 2.3001 -1.0341 -4.7849 22 1 1.5858 0.2471 -4.5537 23 1 3.1462 -0.9163 -5.9997 24 1 1.3112 -2.1256 -4.9744 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 0.2150 2.3189 0.0092 29 1 0.8995 5.1703 -1.0289 30 1 1.6447 5.6569 0.5126 31 1 0.1542 4.6838 0.5126 32 1 4.1402 5.3585 1.0265 33 1 4.9366 4.9611 -0.5149 34 1 3.3439 5.7558 -0.5151 35 1 5.1463 2.6046 -0.0008 36 1 5.1303 0.3945 1.9461 37 1 6.4529 -1.6996 1.8718 38 1 6.3149 -3.1633 -0.1029 39 1 4.0802 -3.1155 -4.0532 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245024465.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:46 Heat of formation + Delta-G solvation = 10.905936 kcal Electronic energy + Delta-G solvation = -22212.295687 eV Core-core repulsion = 19084.691651 eV Total energy + Delta-G solvation = -3127.604035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.73887 -37.84773 -37.25024 -33.59303 -33.12396 -31.34795 -30.27440 -29.68416 -27.37761 -26.89306 -25.62680 -24.75580 -22.09252 -21.23602 -20.99799 -19.50674 -17.41175 -16.96321 -15.96951 -15.52900 -15.02069 -14.92694 -14.31434 -14.05486 -13.76696 -13.67958 -13.56909 -13.26045 -12.61307 -12.57265 -12.30289 -11.89550 -11.85442 -11.72371 -11.59313 -11.41466 -11.19979 -11.09888 -10.93259 -10.81506 -10.47562 -10.18796 -10.15536 -9.74231 -9.36814 -8.33517 -8.02716 -7.61805 -7.49639 -7.04417 -6.37472 -4.43493 1.86071 2.03517 2.77301 3.04594 3.08406 3.13514 3.26041 3.95535 3.97285 4.30840 4.79181 5.13430 5.25310 5.39248 5.48212 5.53170 5.56816 5.61189 5.74767 5.85542 5.87208 5.91802 5.98778 6.01667 6.10095 6.16831 6.19186 6.27654 6.40196 6.59809 6.70223 6.89955 6.93442 7.02713 7.13541 7.20708 7.40916 7.44748 7.65622 7.81667 8.10881 8.17455 8.31983 8.69155 9.01481 10.15328 10.33037 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013310 B = 0.007511 C = 0.006048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.191306 B = 3726.977865 C = 4628.504704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.285 6.285 3 C 0.137 3.863 4 C -0.213 4.213 5 C -0.074 4.074 6 C -0.108 4.108 7 C -0.130 4.130 8 C -0.104 4.104 9 C -0.083 4.083 10 C -0.006 4.006 11 C -0.221 4.221 12 C -0.037 4.037 13 C -0.324 4.324 14 C 0.129 3.871 15 N -0.483 5.483 16 C 0.276 3.724 17 C -0.402 4.402 18 H 0.083 0.917 19 C 0.069 3.931 20 N -0.711 5.711 21 Si 0.900 3.100 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.272 1.272 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.093 0.907 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.540 9.447 3.902 11.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.197 6.197 3 C 0.091 3.909 4 C -0.232 4.232 5 C -0.074 4.074 6 C -0.165 4.165 7 C -0.131 4.131 8 C -0.161 4.161 9 C -0.101 4.101 10 C -0.007 4.007 11 C -0.226 4.226 12 C -0.061 4.061 13 C -0.347 4.347 14 C -0.039 4.039 15 N -0.195 5.195 16 C 0.152 3.848 17 C -0.433 4.433 18 H 0.101 0.899 19 C -0.157 4.157 20 N -0.332 5.332 21 Si 0.724 3.276 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.198 1.198 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.136 0.864 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.134 0.866 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.487 8.521 2.999 10.569 hybrid contribution -0.680 0.678 0.116 0.967 sum -6.167 9.199 3.115 11.504 Atomic orbital electron populations 1.22944 0.80398 1.03216 1.00183 1.86311 1.19316 1.26227 1.87816 1.19215 0.91889 0.83861 0.95944 1.20883 0.99089 0.91924 1.11259 1.19335 0.93092 0.94021 1.00967 1.20741 0.98828 0.95218 1.01698 1.19427 0.92775 0.95069 1.05783 1.20675 1.00062 0.93994 1.01340 1.20962 0.99178 0.90327 0.99666 1.18047 0.89088 0.93298 1.00298 1.19132 1.06406 0.98190 0.98874 1.20833 0.94233 0.95419 0.95620 1.21153 1.10905 1.00681 1.01951 1.22556 0.94826 0.96751 0.89777 1.68751 1.08304 1.17923 1.24518 1.18465 0.89589 0.86305 0.90422 1.19519 1.19722 1.05736 0.98281 0.89890 1.26117 0.95348 0.94466 0.99738 1.70143 1.28119 1.06982 1.27993 0.86388 0.80444 0.79779 0.81026 1.18343 1.19731 1.19752 0.93713 0.93305 0.88893 0.86365 0.91722 0.91709 0.92292 0.92143 0.92053 0.92088 0.86107 0.88876 0.88941 0.86625 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.28 -6.09 9.05 -18.99 -0.17 -6.26 16 3 C 0.14 2.86 5.47 -38.71 -0.21 2.65 16 4 C -0.21 -3.73 8.67 -39.48 -0.34 -4.07 16 5 C -0.07 -1.19 5.89 -104.53 -0.62 -1.81 16 6 C -0.11 -1.30 9.18 36.01 0.33 -0.97 16 7 C -0.13 -2.17 5.88 -104.66 -0.61 -2.79 16 8 C -0.10 -1.33 9.18 36.01 0.33 -1.00 16 9 C -0.08 -1.61 9.39 -39.18 -0.37 -1.98 16 10 C -0.01 -0.13 4.47 -104.75 -0.47 -0.60 16 11 C -0.22 -5.52 5.00 -104.09 -0.52 -6.04 16 12 C -0.04 -0.86 9.88 -38.97 -0.39 -1.25 16 13 C -0.32 -7.48 10.10 -39.23 -0.40 -7.87 16 14 C 0.13 3.21 11.17 -17.48 -0.20 3.02 16 15 N -0.48 -13.60 7.85 -10.90 -0.09 -13.69 16 16 C 0.28 7.64 6.41 -84.70 -0.54 7.10 16 17 C -0.40 -10.94 7.93 -37.92 -0.30 -11.24 16 18 H 0.08 2.22 6.01 -52.48 -0.32 1.91 16 19 C 0.07 1.79 5.50 -17.32 -0.10 1.69 16 20 N -0.71 -19.17 11.46 55.56 0.64 -18.53 16 21 Si 0.90 19.10 29.56 -169.99 -5.02 14.07 16 22 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H 0.04 0.59 7.65 -51.93 -0.40 0.19 16 26 H 0.05 0.70 7.67 -51.93 -0.40 0.30 16 27 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.12 1.77 6.30 -52.49 -0.33 1.44 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.68 6.68 -51.93 -0.35 0.34 16 31 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.06 0.68 6.68 -51.93 -0.35 0.34 16 35 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 36 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.09 1.87 8.06 -52.48 -0.42 1.44 16 38 H 0.12 2.55 8.06 -52.49 -0.42 2.13 16 39 H 0.27 6.61 8.29 -40.82 -0.34 6.27 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -30.92 325.25 -8.22 -39.13 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.07 Total: 4.10 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -3.40 Total: -23.73 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.55 Total: -32.22 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.17 Total: -6.26 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.92 -8.22 -39.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245024465.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.037 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds