Wall clock time and date at job start Tue Mar 31 2020 05:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36004 * 116.99710 * 2 1 4 4 C 1.38096 * 120.00930 * 0.02562 * 3 2 1 5 5 C 1.39741 * 119.87485 * 179.97438 * 4 3 2 6 6 C 1.47823 * 120.04866 * 179.97438 * 5 4 3 7 7 C 1.40057 * 119.88931 * 0.02562 * 6 5 4 8 8 C 1.36175 * 120.11386 * 180.02562 * 7 6 5 9 9 C 1.40976 * 119.88437 * 359.97438 * 8 7 6 10 10 C 1.40975 * 120.10848 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99789 * 153.72653 * 10 9 8 12 12 C 1.39946 * 119.99965 * 333.71444 * 10 9 8 13 13 N 1.30835 * 120.00347 * 343.35369 * 12 10 9 14 14 Si 1.86805 * 119.99748 * 163.34325 * 12 10 9 15 15 H 1.48504 * 109.46664 * 94.84418 * 14 12 10 16 16 H 1.48501 * 109.47173 * 214.84055 * 14 12 10 17 17 H 1.48493 * 109.47352 * 334.84355 * 14 12 10 18 18 C 1.40951 * 119.77953 * 0.02562 * 9 8 7 19 19 C 1.50705 * 120.05469 * 180.02562 * 18 9 8 20 20 C 1.36201 * 119.88363 * 359.72303 * 18 9 8 21 21 C 1.39735 * 119.90165 * 359.97438 * 5 4 3 22 22 C 1.37787 * 120.01831 * 0.02562 * 21 5 4 23 23 C 1.39011 * 120.12494 * 0.25444 * 22 21 5 24 24 N 1.39552 * 119.95097 * 179.72502 * 23 22 21 25 25 H 1.09003 * 109.46633 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47440 * 299.99663 * 1 2 3 27 27 H 1.09002 * 109.47063 * 60.00542 * 1 2 3 28 28 H 1.07994 * 120.06363 * 359.96866 * 4 3 2 29 29 H 1.08000 * 119.93594 * 359.97438 * 7 6 5 30 30 H 1.07996 * 120.05664 * 179.97438 * 8 7 6 31 31 H 0.97002 * 120.00007 * 179.97438 * 13 12 10 32 32 H 1.09001 * 109.46867 * 90.00126 * 19 18 9 33 33 H 1.09002 * 109.47062 * 210.00182 * 19 18 9 34 34 H 1.08999 * 109.47243 * 330.00223 * 19 18 9 35 35 H 1.08005 * 119.94250 * 180.27432 * 20 18 9 36 36 H 1.08001 * 119.99080 * 180.02562 * 21 5 4 37 37 H 1.08004 * 119.94100 * 179.97438 * 22 21 5 38 38 H 0.97000 * 120.00309 * 0.02562 * 24 23 22 39 39 H 0.96998 * 120.00049 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2944 2.3701 0.0005 5 6 1.9316 3.6137 0.0011 6 6 1.1304 4.8560 0.0011 7 6 -0.2683 4.7844 0.0011 8 6 -1.0109 5.9259 0.0006 9 6 -0.3693 7.1812 0.0006 10 6 -1.1334 8.3659 -0.0005 11 1 -0.7215 9.2744 0.4135 12 6 -2.4254 8.3648 -0.5383 13 7 -2.8076 7.3881 -1.3205 14 14 -3.6044 9.7576 -0.1390 15 1 -3.5385 10.7842 -1.2100 16 1 -4.9876 9.2247 -0.0486 17 1 -3.2245 10.3711 1.1588 18 6 1.0387 7.2478 0.0006 19 6 1.7310 8.5864 0.0011 20 6 1.7723 6.1003 0.0063 21 6 3.3273 3.6813 0.0016 22 6 4.0735 2.5229 0.0011 23 6 3.4406 1.2853 -0.0053 24 7 4.1998 0.1144 -0.0117 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2158 2.3149 0.0004 29 1 -0.7587 3.8222 0.0007 30 1 -2.0893 5.8696 0.0001 31 1 -3.7033 7.3871 -1.6929 32 1 1.8979 8.9086 1.0290 33 1 2.6884 8.5005 -0.5128 34 1 1.1073 9.3182 -0.5123 35 1 2.8512 6.1502 0.0107 36 1 3.8214 4.6417 0.0025 37 1 5.1522 2.5766 0.0011 38 1 5.1686 0.1645 -0.0112 39 1 3.7589 -0.7495 -0.0158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245503554.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:43 Heat of formation + Delta-G solvation = -5.237826 kcal Electronic energy + Delta-G solvation = -21157.798343 eV Core-core repulsion = 18029.494262 eV Total energy + Delta-G solvation = -3128.304081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.80548 -38.03098 -36.86180 -34.60417 -33.43203 -31.63509 -30.02341 -29.67308 -28.02743 -27.03805 -25.90206 -24.46078 -22.06175 -21.98248 -20.26183 -19.33754 -17.44598 -17.37390 -16.61471 -16.26775 -15.44947 -15.36766 -14.80482 -14.58187 -13.96254 -13.80438 -13.32495 -12.92766 -12.82609 -12.71598 -12.54666 -12.12630 -11.89255 -11.59092 -11.32664 -11.24016 -11.11250 -11.06046 -10.83705 -10.73837 -10.71525 -10.43493 -9.88975 -9.55777 -9.35289 -9.18893 -8.14407 -7.58868 -7.41558 -6.89706 -6.47982 -4.36513 1.76731 1.93756 2.81045 3.00756 3.05353 3.07235 3.24269 3.54196 3.83818 4.23700 4.30448 4.74380 5.19298 5.31745 5.35671 5.57227 5.63245 5.68051 5.75537 5.81976 6.03947 6.17913 6.21699 6.38299 6.41016 6.60002 6.64891 6.69046 6.81061 6.93852 7.00565 7.08484 7.21846 7.28783 7.42757 7.49311 7.60822 7.86854 7.99833 8.03185 8.08034 8.12450 8.21781 8.53499 8.77881 8.90344 10.04832 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.025591 B = 0.004015 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.892006 B = 6971.340772 C = 7973.830473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.329 6.329 3 C 0.056 3.944 4 C -0.181 4.181 5 C 0.004 3.996 6 C -0.189 4.189 7 C -0.083 4.083 8 C -0.167 4.167 9 C 0.121 3.879 10 C -0.447 4.447 11 H 0.083 0.917 12 C 0.074 3.926 13 N -0.783 5.783 14 Si 0.908 3.092 15 H -0.269 1.269 16 H -0.274 1.274 17 H -0.259 1.259 18 C -0.201 4.201 19 C -0.085 4.085 20 C -0.065 4.065 21 C -0.129 4.129 22 C -0.157 4.157 23 C 0.156 3.844 24 N -0.883 5.883 25 H 0.092 0.908 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.126 0.874 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.283 0.717 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.391 0.609 39 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.755 -8.719 1.664 10.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.243 6.243 3 C 0.009 3.991 4 C -0.200 4.200 5 C 0.002 3.998 6 C -0.190 4.190 7 C -0.102 4.102 8 C -0.186 4.186 9 C 0.118 3.882 10 C -0.475 4.475 11 H 0.101 0.899 12 C -0.145 4.145 13 N -0.407 5.407 14 Si 0.732 3.268 15 H -0.194 1.194 16 H -0.199 1.199 17 H -0.183 1.183 18 C -0.202 4.202 19 C -0.142 4.142 20 C -0.083 4.083 21 C -0.148 4.148 22 C -0.180 4.180 23 C 0.054 3.946 24 N -0.425 5.425 25 H 0.110 0.890 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.144 0.856 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.218 0.782 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 5.575 -8.915 1.509 10.623 hybrid contribution -0.727 0.357 0.015 0.810 sum 4.848 -8.558 1.524 9.953 Atomic orbital electron populations 1.22920 0.78932 1.02913 1.01523 1.85868 1.20877 1.27246 1.90346 1.18302 0.90240 0.84421 1.06165 1.21087 0.99565 0.91202 1.08194 1.18598 0.92270 0.92145 0.96772 1.18030 0.92387 0.90573 1.18037 1.20475 0.92730 0.96933 1.00051 1.20942 0.99471 0.91556 1.06655 1.17566 0.90390 0.93145 0.87090 1.19645 0.97640 0.97017 1.33232 0.89900 1.25994 0.98769 0.97038 0.92704 1.69837 1.19490 1.30532 1.20865 0.86296 0.79256 0.81034 0.80220 1.19438 1.19940 1.18267 1.19445 0.93836 0.93693 1.13240 1.20411 0.98206 0.95897 0.99676 1.20253 0.97082 0.91797 0.99174 1.20887 0.93214 0.97352 1.03305 1.20253 0.98795 0.90349 1.08570 1.16980 0.87230 0.87589 1.02779 1.42025 1.07550 1.05400 1.87520 0.89006 0.92888 0.92846 0.85642 0.89460 0.86570 0.90649 0.94010 0.94291 0.92070 0.88930 0.86188 0.86431 0.78182 0.77601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.33 -4.95 9.73 -19.75 -0.19 -5.14 16 3 C 0.06 0.96 6.70 -39.12 -0.26 0.69 16 4 C -0.18 -3.35 8.41 -39.07 -0.33 -3.68 16 5 C 0.00 0.08 5.88 -104.86 -0.62 -0.54 16 6 C -0.19 -4.27 5.90 -104.63 -0.62 -4.88 16 7 C -0.08 -1.95 9.36 -39.64 -0.37 -2.32 16 8 C -0.17 -4.25 8.61 -39.29 -0.34 -4.58 16 9 C 0.12 3.11 5.56 -106.80 -0.59 2.52 16 10 C -0.45 -11.29 8.09 -37.91 -0.31 -11.59 16 11 H 0.08 2.00 6.88 -52.49 -0.36 1.64 16 12 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 13 N -0.78 -19.50 10.99 55.55 0.61 -18.89 16 14 Si 0.91 17.87 29.59 -169.99 -5.03 12.84 16 15 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 16 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 17 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 18 C -0.20 -4.76 5.90 -104.33 -0.62 -5.38 16 19 C -0.09 -1.73 9.39 36.01 0.34 -1.39 16 20 C -0.06 -1.46 8.99 -39.65 -0.36 -1.81 16 21 C -0.13 -2.29 9.42 -39.19 -0.37 -2.66 16 22 C -0.16 -2.45 9.87 -39.46 -0.39 -2.84 16 23 C 0.16 2.45 6.77 -83.54 -0.57 1.89 16 24 N -0.88 -10.68 9.07 32.54 0.30 -10.39 16 25 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 27 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 28 H 0.13 2.22 4.40 -52.49 -0.23 1.99 16 29 H 0.09 1.84 6.17 -52.49 -0.32 1.52 16 30 H 0.12 3.02 6.23 -52.49 -0.33 2.70 16 31 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.06 1.26 6.77 -51.93 -0.35 0.91 16 35 H 0.09 1.84 6.16 -52.48 -0.32 1.52 16 36 H 0.12 2.00 6.17 -52.49 -0.32 1.68 16 37 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 38 H 0.39 3.73 8.84 -40.82 -0.36 3.37 16 39 H 0.40 4.48 8.17 -40.82 -0.33 4.15 16 LS Contribution 320.32 15.07 4.83 4.83 Total: -1.00 -28.00 320.32 -8.53 -36.53 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -4.55 Total: 13.72 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: -4.49 Total: -33.50 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: 0.91 Total: -29.28 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.19 Total: -5.14 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.00 -8.53 -36.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245503554.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.295 kcal (2) G-P(sol) polarization free energy of solvation -28.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds