Wall clock time and date at job start Tue Mar 31 2020 05:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35846 * 116.99919 * 2 1 4 4 C 1.38858 * 119.92885 * 180.02562 * 3 2 1 5 5 C 1.37883 * 120.06303 * 179.97438 * 4 3 2 6 6 C 1.50697 * 120.03202 * 179.97438 * 5 4 3 7 7 C 1.39413 * 119.93376 * 359.97438 * 5 4 3 8 8 C 1.48297 * 120.06553 * 180.02562 * 7 5 4 9 9 C 1.38942 * 119.62104 * 54.77743 * 8 7 5 10 10 C 1.40830 * 118.76055 * 179.74117 * 9 8 7 11 11 C 1.41527 * 120.98346 * 180.26335 * 10 9 8 12 12 H 1.08006 * 119.99657 * 201.62822 * 11 10 9 13 13 C 1.40045 * 120.00284 * 21.62462 * 11 10 9 14 14 N 1.30726 * 119.99903 * 16.62092 * 13 11 10 15 15 Si 1.86797 * 119.99707 * 196.62241 * 13 11 10 16 16 H 1.48496 * 109.47419 * 60.00235 * 15 13 11 17 17 H 1.48504 * 109.46879 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47510 * 299.99770 * 15 13 11 19 19 C 1.41152 * 118.02723 * 0.51711 * 10 9 8 20 20 C 1.37716 * 119.08439 * 359.74009 * 19 10 9 21 21 N 1.31941 * 121.15962 * 0.02562 * 20 19 10 22 22 C 1.39414 * 119.86783 * 0.02562 * 7 5 4 23 23 C 1.50693 * 120.03506 * 180.02562 * 22 7 5 24 24 C 1.37881 * 119.93127 * 0.02562 * 22 7 5 25 25 H 1.08994 * 109.47331 * 60.00195 * 1 2 3 26 26 H 1.09001 * 109.47130 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47298 * 299.99908 * 1 2 3 28 28 H 1.07999 * 119.97127 * 359.69681 * 4 3 2 29 29 H 1.09000 * 109.47049 * 95.55408 * 6 5 4 30 30 H 1.09000 * 109.47450 * 215.55157 * 6 5 4 31 31 H 1.09005 * 109.47428 * 335.55369 * 6 5 4 32 32 H 1.08005 * 120.61869 * 0.02562 * 9 8 7 33 33 H 0.97007 * 120.00039 * 179.97438 * 14 13 11 34 34 H 1.07999 * 120.46015 * 179.75789 * 19 10 9 35 35 H 1.08003 * 119.42334 * 180.02562 * 20 19 10 36 36 H 1.09004 * 109.46743 * 273.24403 * 23 22 7 37 37 H 1.08997 * 109.47429 * 33.24104 * 23 22 7 38 38 H 1.09003 * 109.47387 * 153.24439 * 23 22 7 39 39 H 1.07998 * 119.96483 * 180.02562 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 3.4325 1.2814 -0.0005 5 6 4.0613 2.5085 -0.0011 6 6 5.5663 2.5847 -0.0011 7 6 3.3034 3.6786 -0.0016 8 6 3.9767 4.9999 -0.0028 9 6 4.9088 5.2948 -0.9900 10 6 5.5332 6.5571 -0.9770 11 6 6.4854 6.9090 -1.9631 12 1 7.1992 7.6958 -1.7680 13 6 6.5023 6.2371 -3.1917 14 7 5.4683 5.5290 -3.5637 15 14 8.0023 6.3527 -4.2989 16 1 9.1888 5.8197 -3.5823 17 1 7.7700 5.5581 -5.5318 18 1 8.2406 7.7724 -4.6632 19 6 5.1851 7.4587 0.0517 20 6 4.2536 7.0755 0.9909 21 7 3.6860 5.8854 0.9434 22 6 1.9112 3.6040 -0.0011 23 6 1.0883 4.8664 -0.0022 24 6 1.2881 2.3740 0.0005 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 4.0191 0.3746 0.0040 29 1 5.9242 2.7019 -1.0240 30 1 5.8870 3.4383 0.5961 31 1 5.9766 1.6689 0.4246 32 1 5.1466 4.5713 -1.7558 33 1 5.4798 5.0639 -4.4149 34 1 5.6428 8.4356 0.1015 35 1 3.9830 7.7612 1.7802 36 1 0.9390 5.2037 1.0235 37 1 1.6096 5.6395 -0.5666 38 1 0.1210 4.6692 -0.4643 39 1 0.2097 2.3157 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245677348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:59 Heat of formation + Delta-G solvation = -2.907240 kcal Electronic energy + Delta-G solvation = -21791.458520 eV Core-core repulsion = 18663.255501 eV Total energy + Delta-G solvation = -3128.203019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.97323 -38.53472 -37.06096 -34.17681 -33.13796 -31.63351 -30.51779 -28.85850 -27.61630 -26.54942 -26.09613 -25.64280 -22.17713 -21.61822 -20.25385 -20.02104 -17.51559 -17.15846 -16.17878 -15.62314 -15.55775 -15.12504 -14.38352 -14.25510 -13.89330 -13.61092 -13.24908 -13.04776 -12.67307 -12.62836 -12.55980 -12.20397 -11.98929 -11.78012 -11.74895 -11.44258 -11.28526 -11.20928 -11.05467 -10.90273 -10.41113 -10.37138 -10.26613 -9.79363 -9.44785 -8.22300 -8.16101 -7.98924 -7.86282 -7.14500 -6.86462 -4.62205 1.74086 1.80116 2.73835 2.82424 2.99861 3.01859 3.23479 3.47022 3.82236 4.16357 4.60182 5.04146 5.18773 5.19251 5.27217 5.31788 5.44328 5.54958 5.61757 5.73612 5.87248 6.01547 6.07712 6.16267 6.22247 6.26488 6.32746 6.47870 6.65653 6.72318 6.77327 6.82238 6.88504 6.99262 7.11636 7.16287 7.25427 7.37298 7.47293 7.70856 7.85152 8.09185 8.42439 8.71436 8.71674 9.58763 10.02813 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018663 B = 0.005246 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.915630 B = 5335.724136 C = 6113.973381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.119 3.881 4 C -0.162 4.162 5 C -0.029 4.029 6 C -0.111 4.111 7 C -0.041 4.041 8 C 0.146 3.854 9 C -0.189 4.189 10 C 0.123 3.877 11 C -0.454 4.454 12 H 0.081 0.919 13 C 0.078 3.922 14 N -0.783 5.783 15 Si 0.910 3.090 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.264 1.264 19 C -0.276 4.276 20 C 0.099 3.901 21 N -0.561 5.561 22 C -0.021 4.021 23 C -0.101 4.101 24 C -0.219 4.219 25 H 0.053 0.947 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.125 0.875 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.134 0.866 33 H 0.284 0.716 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 -7.180 2.642 9.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.074 3.926 4 C -0.180 4.180 5 C -0.030 4.030 6 C -0.167 4.167 7 C -0.042 4.042 8 C 0.015 3.985 9 C -0.212 4.212 10 C 0.115 3.885 11 C -0.485 4.485 12 H 0.099 0.901 13 C -0.142 4.142 14 N -0.408 5.408 15 Si 0.734 3.266 16 H -0.186 1.186 17 H -0.201 1.201 18 H -0.189 1.189 19 C -0.299 4.299 20 C -0.056 4.056 21 N -0.276 5.276 22 C -0.021 4.021 23 C -0.158 4.158 24 C -0.237 4.237 25 H 0.071 0.929 26 H 0.112 0.888 27 H 0.071 0.929 28 H 0.143 0.857 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.052 -7.737 3.089 10.297 hybrid contribution 0.937 0.507 -1.297 1.679 sum -5.114 -7.230 1.792 9.036 Atomic orbital electron populations 1.22961 0.79099 1.03212 1.01276 1.86000 1.20845 1.27480 1.89288 1.18909 0.92128 0.83639 0.97911 1.20040 0.91002 0.97624 1.09368 1.19683 0.96094 0.91122 0.96128 1.20835 0.90600 1.02155 1.03116 1.18410 0.91767 0.91797 1.02235 1.19109 0.95192 0.91507 0.92716 1.22319 1.00384 0.98197 1.00289 1.17771 0.89963 0.90087 0.90667 1.19587 1.14197 1.17062 0.97634 0.90110 1.25972 0.96581 0.93110 0.98542 1.69751 1.27548 1.22823 1.20675 0.86324 0.81845 0.79555 0.78853 1.18611 1.20145 1.18854 1.21874 1.05704 1.00257 1.02042 1.21805 0.94200 0.92709 0.96866 1.67436 1.30477 1.03542 1.26121 1.19687 0.93069 0.94328 0.95046 1.20678 0.97487 0.94975 1.02652 1.20891 0.99251 0.91752 1.11840 0.92866 0.88787 0.92905 0.85712 0.90492 0.90804 0.92338 0.84869 0.90450 0.88298 0.86273 0.90706 0.90999 0.93069 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.80 10.49 -19.26 -0.20 -5.00 16 3 C 0.12 2.01 6.69 -39.13 -0.26 1.75 16 4 C -0.16 -2.83 9.60 -39.48 -0.38 -3.21 16 5 C -0.03 -0.57 5.87 -104.32 -0.61 -1.18 16 6 C -0.11 -1.99 8.52 36.00 0.31 -1.68 16 7 C -0.04 -0.88 5.55 -104.88 -0.58 -1.46 16 8 C 0.15 3.45 4.31 -83.05 -0.36 3.09 16 9 C -0.19 -4.78 6.93 -38.34 -0.27 -5.04 16 10 C 0.12 3.18 5.63 -106.56 -0.60 2.58 16 11 C -0.45 -11.55 9.13 -37.65 -0.34 -11.89 16 12 H 0.08 1.97 7.90 -52.48 -0.41 1.55 16 13 C 0.08 1.87 5.22 -17.35 -0.09 1.78 16 14 N -0.78 -19.46 10.77 55.55 0.60 -18.86 16 15 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 16 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 17 H -0.28 -5.31 7.11 56.52 0.40 -4.90 16 18 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 19 C -0.28 -6.58 9.90 -38.67 -0.38 -6.96 16 20 C 0.10 2.25 11.15 -17.70 -0.20 2.05 16 21 N -0.56 -13.21 9.24 -9.95 -0.09 -13.31 16 22 C -0.02 -0.40 5.90 -104.32 -0.62 -1.01 16 23 C -0.10 -1.82 8.96 36.00 0.32 -1.50 16 24 C -0.22 -3.68 8.66 -39.49 -0.34 -4.02 16 25 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 26 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 28 H 0.12 1.92 8.06 -52.49 -0.42 1.49 16 29 H 0.08 1.42 7.43 -51.93 -0.39 1.03 16 30 H 0.07 1.45 6.99 -51.93 -0.36 1.09 16 31 H 0.06 0.87 8.05 -51.93 -0.42 0.45 16 32 H 0.13 3.45 5.12 -52.48 -0.27 3.18 16 33 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 34 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 35 H 0.12 2.31 8.06 -52.48 -0.42 1.89 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.48 7.03 -51.93 -0.37 1.12 16 38 H 0.05 0.77 8.06 -51.93 -0.42 0.35 16 39 H 0.12 1.69 6.28 -52.49 -0.33 1.37 16 LS Contribution 324.16 15.07 4.88 4.88 Total: -1.00 -28.09 324.16 -8.26 -36.34 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.01 Total: 8.50 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -3.41 Total: -25.42 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.51 Total: -32.16 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.20 Total: -5.00 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.09 -8.26 -36.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245677348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.436 kcal (2) G-P(sol) polarization free energy of solvation -28.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds