Wall clock time and date at job start Tue Mar 31 2020 05:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35791 * 117.00037 * 2 1 4 4 C 1.38972 * 119.91049 * 359.72203 * 3 2 1 5 5 C 1.37751 * 120.08696 * 180.27763 * 4 3 2 6 6 C 1.50696 * 120.04615 * 180.02562 * 5 4 3 7 7 C 1.39718 * 119.90990 * 359.97438 * 5 4 3 8 8 C 1.47839 * 120.08391 * 180.02562 * 7 5 4 9 9 C 1.39966 * 119.45759 * 304.05653 * 8 7 5 10 10 C 1.36553 * 119.46651 * 179.78763 * 9 8 7 11 11 C 1.41334 * 118.42167 * 0.48384 * 10 9 8 12 12 C 1.41023 * 120.55060 * 179.76630 * 11 10 9 13 13 H 1.07993 * 120.00052 * 156.62888 * 12 11 10 14 14 C 1.39999 * 119.99966 * 336.61597 * 12 11 10 15 15 N 1.30809 * 119.99872 * 340.91693 * 14 12 11 16 16 Si 1.86803 * 119.99670 * 160.91025 * 14 12 11 17 17 H 1.48498 * 109.47156 * 90.00634 * 16 14 12 18 18 H 1.48505 * 109.46821 * 210.00517 * 16 14 12 19 19 H 1.48503 * 109.47371 * 330.00333 * 16 14 12 20 20 C 1.40954 * 118.89700 * 359.74386 * 11 10 9 21 21 N 1.31253 * 120.40956 * 0.02562 * 20 11 10 22 22 C 1.39705 * 119.82519 * 0.02562 * 7 5 4 23 23 C 1.50703 * 120.04660 * 180.02562 * 22 7 5 24 24 C 1.37753 * 119.91457 * 0.02562 * 22 7 5 25 25 H 1.08999 * 109.47168 * 60.00099 * 1 2 3 26 26 H 1.09005 * 109.47476 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47316 * 300.00091 * 1 2 3 28 28 H 1.07998 * 119.95993 * 0.28808 * 4 3 2 29 29 H 1.09000 * 109.47162 * 265.75784 * 6 5 4 30 30 H 1.09002 * 109.47143 * 25.75498 * 6 5 4 31 31 H 1.09003 * 109.47474 * 145.75868 * 6 5 4 32 32 H 1.08001 * 120.26436 * 0.02562 * 9 8 7 33 33 H 1.08006 * 120.79498 * 180.24757 * 10 9 8 34 34 H 0.97002 * 119.99332 * 179.97438 * 15 14 12 35 35 H 1.08005 * 119.79060 * 179.97438 * 20 11 10 36 36 H 1.08995 * 109.47684 * 275.64924 * 23 22 7 37 37 H 1.09003 * 109.46875 * 35.64665 * 23 22 7 38 38 H 1.08995 * 109.47516 * 155.64474 * 23 22 7 39 39 H 1.08000 * 119.96064 * 179.97438 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2867 2.3742 -0.0058 5 6 1.9084 3.6035 -0.0116 6 6 1.0848 4.8655 -0.0174 7 6 3.3035 3.6787 -0.0111 8 6 3.9747 4.9960 -0.0167 9 6 3.6797 5.9144 -1.0308 10 6 4.2962 7.1329 -1.0338 11 6 5.2257 7.4189 -0.0082 12 6 5.8920 8.6612 0.0293 13 1 6.2902 9.0325 0.9619 14 6 6.0374 9.4132 -1.1426 15 7 5.9070 8.8371 -2.3098 16 14 6.4176 11.2392 -1.0395 17 1 7.8891 11.4384 -1.0248 18 1 5.8358 11.9331 -2.2165 19 1 5.8300 11.7977 0.2047 20 6 5.4752 6.4420 0.9768 21 7 4.8535 5.2867 0.9392 22 6 4.0626 2.5059 -0.0052 23 6 5.5677 2.5812 -0.0040 24 6 3.4334 1.2804 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2084 2.3153 -0.0057 29 1 0.9497 5.2065 -1.0438 30 1 0.1111 4.6660 0.4302 31 1 1.5977 5.6368 0.5572 32 1 2.9673 5.6630 -1.8026 33 1 4.0816 7.8593 -1.8037 34 1 6.0074 9.3582 -3.1217 35 1 6.1830 6.6452 1.7669 36 1 5.9267 2.6959 -1.0268 37 1 5.8882 3.4360 0.5915 38 1 5.9770 1.6662 0.4242 39 1 4.0195 0.3733 0.0036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245677524.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:02 Heat of formation + Delta-G solvation = -1.637509 kcal Electronic energy + Delta-G solvation = -21402.111869 eV Core-core repulsion = 18273.963909 eV Total energy + Delta-G solvation = -3128.147960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.97074 -38.57256 -37.10131 -34.19752 -33.22969 -31.41190 -30.60610 -29.40306 -27.67534 -27.16000 -25.93594 -24.97125 -22.14400 -21.55963 -20.32428 -20.13183 -17.47235 -17.17693 -16.19186 -16.02103 -15.61171 -15.42163 -14.51626 -13.98579 -13.91054 -13.62662 -13.27002 -13.02895 -12.71397 -12.68399 -12.41114 -12.13381 -12.00925 -11.84311 -11.76500 -11.58919 -11.41915 -11.25237 -11.14213 -10.85134 -10.61779 -10.43819 -10.29471 -9.86999 -9.41369 -8.31031 -8.23289 -8.10537 -7.92696 -7.26985 -6.93935 -4.54403 1.74221 1.76745 2.59469 2.93660 2.96006 3.00325 3.12621 3.45718 3.76065 4.12254 4.48982 5.00285 5.15259 5.17312 5.22320 5.39542 5.44537 5.55353 5.56146 5.73335 5.89014 5.98281 6.01184 6.12718 6.15816 6.26128 6.30477 6.48550 6.58994 6.67261 6.70177 6.76082 6.87724 6.91787 7.05068 7.15456 7.23075 7.29011 7.62371 7.75090 7.82844 7.89555 8.35208 8.56000 8.65280 9.58325 9.91650 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.035120 B = 0.003818 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.064894 B = 7331.698646 C = 7721.924798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.323 6.323 3 C 0.111 3.889 4 C -0.215 4.215 5 C -0.043 4.043 6 C -0.109 4.109 7 C -0.021 4.021 8 C 0.007 3.993 9 C -0.120 4.120 10 C -0.144 4.144 11 C 0.070 3.930 12 C -0.442 4.442 13 H 0.085 0.915 14 C 0.075 3.925 15 N -0.779 5.779 16 Si 0.911 3.089 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.258 1.258 20 C -0.024 4.024 21 N -0.447 5.447 22 C -0.028 4.028 23 C -0.119 4.119 24 C -0.161 4.161 25 H 0.052 0.948 26 H 0.093 0.907 27 H 0.052 0.948 28 H 0.120 0.880 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.285 0.715 35 H 0.127 0.873 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 -7.875 0.726 10.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.237 6.237 3 C 0.067 3.933 4 C -0.233 4.233 5 C -0.044 4.044 6 C -0.165 4.165 7 C -0.022 4.022 8 C -0.128 4.128 9 C -0.140 4.140 10 C -0.170 4.170 11 C 0.065 3.935 12 C -0.471 4.471 13 H 0.103 0.897 14 C -0.145 4.145 15 N -0.403 5.403 16 Si 0.735 3.265 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.182 1.182 20 C -0.187 4.187 21 N -0.154 5.154 22 C -0.028 4.028 23 C -0.175 4.175 24 C -0.179 4.179 25 H 0.071 0.929 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.138 0.862 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.142 0.858 34 H 0.096 0.904 35 H 0.144 0.856 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.165 -8.636 1.087 11.274 hybrid contribution -0.275 1.571 -0.872 1.818 sum -7.439 -7.065 0.215 10.262 Atomic orbital electron populations 1.22953 0.79169 1.03187 1.01197 1.85986 1.20770 1.27551 1.89360 1.18952 0.92126 0.83610 0.98651 1.20845 0.99110 0.91749 1.11636 1.19729 0.93124 0.94226 0.97349 1.20787 0.98077 0.95364 1.02312 1.18322 0.91092 0.91940 1.00825 1.18577 1.03500 0.93892 0.96876 1.21227 1.00098 0.94969 0.97727 1.21277 0.97670 0.96527 1.01498 1.18551 0.90269 0.92976 0.91700 1.19584 1.30507 1.01658 0.95371 0.89727 1.26040 0.92669 1.01131 0.94703 1.69805 1.33490 1.38005 0.98953 0.86250 0.79558 0.81339 0.79361 1.19202 1.19898 1.18171 1.22430 1.03689 0.90058 1.02562 1.66985 1.05371 1.20500 1.22588 1.19803 0.96246 0.91043 0.95753 1.20908 0.90671 1.03398 1.02546 1.20115 0.90943 0.97807 1.09066 0.92944 0.88817 0.92951 0.86167 0.91302 0.92635 0.90654 0.88612 0.85846 0.90358 0.85556 0.91843 0.88485 0.92659 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.66 10.49 -19.08 -0.20 -4.86 16 3 C 0.11 1.81 6.70 -39.03 -0.26 1.55 16 4 C -0.21 -3.41 8.65 -39.49 -0.34 -3.75 16 5 C -0.04 -0.77 5.88 -104.25 -0.61 -1.39 16 6 C -0.11 -1.75 8.56 36.00 0.31 -1.44 16 7 C -0.02 -0.42 5.53 -104.87 -0.58 -1.00 16 8 C 0.01 0.16 4.74 -82.76 -0.39 -0.23 16 9 C -0.12 -2.74 8.17 -39.54 -0.32 -3.06 16 10 C -0.14 -3.57 8.75 -39.01 -0.34 -3.91 16 11 C 0.07 1.76 5.59 -106.64 -0.60 1.16 16 12 C -0.44 -10.93 9.05 -37.87 -0.34 -11.28 16 13 H 0.08 1.98 7.92 -52.49 -0.42 1.57 16 14 C 0.07 1.75 5.14 -17.33 -0.09 1.66 16 15 N -0.78 -18.84 10.99 55.55 0.61 -18.23 16 16 Si 0.91 17.35 29.60 -169.99 -5.03 12.32 16 17 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 18 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 19 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 20 C -0.02 -0.58 10.97 -16.77 -0.18 -0.76 16 21 N -0.45 -10.62 8.20 -9.11 -0.07 -10.70 16 22 C -0.03 -0.52 5.91 -104.25 -0.62 -1.14 16 23 C -0.12 -2.13 9.52 36.01 0.34 -1.79 16 24 C -0.16 -2.74 9.60 -39.48 -0.38 -3.12 16 25 H 0.05 0.48 7.64 -51.93 -0.40 0.08 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.48 7.66 -51.93 -0.40 0.09 16 28 H 0.12 1.57 6.28 -52.49 -0.33 1.24 16 29 H 0.07 1.04 7.58 -51.93 -0.39 0.65 16 30 H 0.05 0.74 8.06 -51.93 -0.42 0.32 16 31 H 0.07 1.37 6.94 -51.93 -0.36 1.01 16 32 H 0.10 2.00 7.31 -52.49 -0.38 1.61 16 33 H 0.12 3.11 6.22 -52.48 -0.33 2.78 16 34 H 0.29 6.24 8.30 -40.82 -0.34 5.91 16 35 H 0.13 2.84 8.06 -52.48 -0.42 2.42 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.10 1.97 5.74 -51.93 -0.30 1.67 16 38 H 0.05 0.84 8.05 -51.93 -0.42 0.42 16 39 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -27.27 323.25 -8.21 -35.48 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.96 Total: 8.32 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: -3.42 Total: -27.19 kcal Atomic # 7 Polarization: -29.47 SS G_CDS: 0.54 Total: -28.93 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.20 Total: -4.86 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.27 -8.21 -35.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245677524.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.841 kcal (2) G-P(sol) polarization free energy of solvation -27.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds