Wall clock time and date at job start Tue Mar 31 2020 05:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35832 * 116.99693 * 2 1 4 4 C 1.38884 * 119.93019 * 179.97438 * 3 2 1 5 5 C 1.37848 * 120.06978 * 179.97438 * 4 3 2 6 6 C 1.50705 * 120.03401 * 180.02562 * 5 4 3 7 7 C 1.39462 * 119.93226 * 0.02562 * 5 4 3 8 8 C 1.48216 * 120.07236 * 179.97438 * 7 5 4 9 9 C 1.39963 * 119.61707 * 125.76736 * 8 7 5 10 10 C 1.38660 * 119.46591 * 179.97438 * 9 8 7 11 11 C 1.38321 * 118.69373 * 0.02562 * 10 9 8 12 12 C 1.40675 * 119.19848 * 359.97438 * 11 10 9 13 13 C 1.41357 * 119.76641 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99797 * 2.42740 * 13 12 11 15 15 C 1.40016 * 119.99963 * 182.70624 * 13 12 11 16 16 N 1.30750 * 120.00039 * 352.20024 * 15 13 12 17 17 Si 1.86800 * 120.00004 * 172.20378 * 15 13 12 18 18 H 1.48504 * 109.47097 * 89.99805 * 17 15 13 19 19 H 1.48500 * 109.47360 * 209.99874 * 17 15 13 20 20 H 1.48501 * 109.47071 * 330.00039 * 17 15 13 21 21 N 1.32258 * 119.61323 * 306.02032 * 8 7 5 22 22 C 1.39470 * 119.85883 * 0.25209 * 7 5 4 23 23 C 1.50699 * 120.03504 * 179.75061 * 22 7 5 24 24 C 1.37852 * 119.93076 * 359.46475 * 22 7 5 25 25 H 1.09004 * 109.46700 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47289 * 299.99614 * 1 2 3 27 27 H 1.09000 * 109.47248 * 60.00141 * 1 2 3 28 28 H 1.08001 * 119.96595 * 0.02628 * 4 3 2 29 29 H 1.08996 * 109.47127 * 264.14225 * 6 5 4 30 30 H 1.09000 * 109.47075 * 24.14297 * 6 5 4 31 31 H 1.09004 * 109.46487 * 144.14379 * 6 5 4 32 32 H 1.07995 * 120.26459 * 0.02562 * 9 8 7 33 33 H 1.07992 * 120.65202 * 180.02562 * 10 9 8 34 34 H 1.08001 * 120.39896 * 180.02562 * 11 10 9 35 35 H 0.96997 * 119.99848 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.47281 * 89.97299 * 23 22 7 37 37 H 1.09004 * 109.47060 * 209.98000 * 23 22 7 38 38 H 1.09003 * 109.47056 * 329.97070 * 23 22 7 39 39 H 1.07998 * 119.96779 * 180.29600 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2103 0.0000 4 6 3.4326 1.2814 0.0005 5 6 4.0613 2.5081 0.0000 6 6 5.5664 2.5843 0.0000 7 6 3.3032 3.6787 -0.0005 8 6 3.9760 4.9993 -0.0005 9 6 3.6566 5.9383 -0.9881 10 6 4.2876 7.1730 -0.9848 11 6 5.2200 7.4397 0.0014 12 6 5.4984 6.4552 0.9669 13 6 6.4496 6.7148 1.9799 14 1 6.9309 7.6802 2.0341 15 6 6.7720 5.7186 2.9094 16 7 6.0879 4.6047 2.9376 17 14 8.1794 5.9809 4.1093 18 1 7.6627 6.6200 5.3462 19 1 8.7921 4.6712 4.4477 20 1 9.2022 6.8602 3.4880 21 7 4.8748 5.2749 0.9298 22 6 1.9105 3.6039 0.0048 23 6 1.0874 4.8662 0.0099 24 6 1.2876 2.3741 -0.0006 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 4.0192 0.3746 0.0005 29 1 5.9240 2.7079 1.0222 30 1 5.9767 1.6659 -0.4199 31 1 5.8871 3.4343 -0.6024 32 1 2.9241 5.7033 -1.7461 33 1 4.0555 7.9119 -1.7375 34 1 5.7276 8.3926 0.0303 35 1 6.3110 3.9147 3.5818 36 1 0.8853 5.1724 -1.0165 37 1 0.1452 4.6836 0.5269 38 1 1.6362 5.6558 0.5233 39 1 0.2092 2.3156 -0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245678937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:07 Heat of formation + Delta-G solvation = 9.051965 kcal Electronic energy + Delta-G solvation = -21920.997905 eV Core-core repulsion = 18793.313476 eV Total energy + Delta-G solvation = -3127.684429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.91489 -38.43080 -36.98922 -33.68553 -33.06370 -31.55422 -30.36317 -29.16753 -27.64327 -26.76301 -25.80781 -25.35655 -22.29270 -21.30122 -20.18202 -19.95642 -17.45999 -17.10960 -16.13943 -15.74132 -15.54155 -14.79343 -14.53875 -14.15368 -13.81923 -13.49672 -13.19481 -12.98308 -12.63040 -12.49549 -12.32017 -12.09116 -11.90838 -11.68286 -11.61372 -11.24149 -11.16490 -11.06082 -10.99302 -10.74681 -10.39320 -10.35671 -10.24237 -9.88667 -9.33323 -8.27992 -8.11171 -7.86270 -7.56879 -7.16555 -6.41533 -4.51303 1.79789 1.85955 2.75931 3.01482 3.09197 3.11132 3.20719 3.50925 3.94486 4.23742 4.72931 5.05573 5.20181 5.25193 5.27654 5.43445 5.47698 5.61067 5.74728 5.89669 5.97625 6.03483 6.09212 6.16191 6.21196 6.37189 6.50827 6.54202 6.63060 6.67675 6.75062 6.84493 6.88926 7.06612 7.12237 7.26026 7.35113 7.37334 7.58261 7.72676 7.77643 8.02970 8.21783 8.66025 8.91575 10.06414 10.29886 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018468 B = 0.005536 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.761781 B = 5056.371553 C = 6004.265460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.120 3.880 4 C -0.166 4.166 5 C -0.005 4.005 6 C -0.103 4.103 7 C -0.045 4.045 8 C 0.186 3.814 9 C -0.298 4.298 10 C -0.060 4.060 11 C -0.276 4.276 12 C 0.255 3.745 13 C -0.433 4.433 14 H 0.082 0.918 15 C 0.073 3.927 16 N -0.711 5.711 17 Si 0.903 3.097 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.262 1.262 21 N -0.462 5.462 22 C -0.032 4.032 23 C -0.110 4.110 24 C -0.221 4.221 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.124 0.876 29 H 0.097 0.903 30 H 0.045 0.955 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.272 0.728 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.194 -5.737 -3.685 9.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.075 3.925 4 C -0.185 4.185 5 C -0.006 4.006 6 C -0.160 4.160 7 C -0.046 4.046 8 C 0.041 3.959 9 C -0.322 4.322 10 C -0.084 4.084 11 C -0.299 4.299 12 C 0.130 3.870 13 C -0.464 4.464 14 H 0.100 0.900 15 C -0.153 4.153 16 N -0.332 5.332 17 Si 0.727 3.273 18 H -0.195 1.195 19 H -0.201 1.201 20 H -0.186 1.186 21 N -0.175 5.175 22 C -0.034 4.034 23 C -0.166 4.166 24 C -0.240 4.240 25 H 0.112 0.888 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.142 0.858 29 H 0.115 0.885 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.883 -6.718 -2.903 10.047 hybrid contribution 0.054 0.911 -0.116 0.920 sum -6.829 -5.806 -3.019 9.459 Atomic orbital electron populations 1.22952 0.79199 1.03159 1.01201 1.86002 1.20762 1.27574 1.89291 1.18934 0.92138 0.83571 0.97827 1.20106 0.90921 0.97852 1.09578 1.19743 0.96501 0.90750 0.93584 1.20749 0.90092 1.00513 1.04599 1.18449 0.91382 0.92275 1.02528 1.19575 0.93610 0.90979 0.91750 1.21174 1.09513 0.96791 1.04705 1.20763 0.95453 0.95477 0.96735 1.21764 1.05805 1.01187 1.01163 1.18533 0.90625 0.86808 0.91027 1.19557 1.18504 0.99428 1.08882 0.89971 1.26012 0.96844 0.94799 0.97628 1.70115 1.31801 1.04022 1.27293 0.86408 0.81537 0.78778 0.80600 1.19538 1.20098 1.18610 1.68928 1.07688 1.19758 1.21079 1.19631 0.92924 0.94329 0.96469 1.20819 0.98347 0.95455 1.01994 1.20803 0.99094 0.91706 1.12410 0.88842 0.92911 0.92967 0.85842 0.88508 0.93557 0.91585 0.88824 0.88695 0.88496 0.91658 0.91344 0.92602 0.90499 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.89 10.49 -19.21 -0.20 -5.09 16 3 C 0.12 2.06 6.69 -39.10 -0.26 1.80 16 4 C -0.17 -3.03 9.60 -39.48 -0.38 -3.41 16 5 C 0.00 -0.10 5.90 -104.31 -0.62 -0.72 16 6 C -0.10 -2.08 8.86 36.01 0.32 -1.76 16 7 C -0.05 -0.98 5.55 -104.88 -0.58 -1.56 16 8 C 0.19 4.43 4.35 -82.94 -0.36 4.07 16 9 C -0.30 -6.63 8.12 -38.78 -0.31 -6.95 16 10 C -0.06 -1.33 10.15 -39.40 -0.40 -1.73 16 11 C -0.28 -6.67 9.83 -38.63 -0.38 -7.05 16 12 C 0.26 6.79 6.55 -85.01 -0.56 6.23 16 13 C -0.43 -11.29 9.13 -37.73 -0.34 -11.63 16 14 H 0.08 2.02 7.86 -52.48 -0.41 1.61 16 15 C 0.07 1.80 5.48 -17.35 -0.10 1.70 16 16 N -0.71 -18.19 11.29 55.55 0.63 -17.56 16 17 Si 0.90 18.28 29.57 -169.99 -5.03 13.26 16 18 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 19 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 21 N -0.46 -12.15 6.75 -7.69 -0.05 -12.20 16 22 C -0.03 -0.61 5.87 -104.31 -0.61 -1.22 16 23 C -0.11 -1.82 8.56 36.01 0.31 -1.52 16 24 C -0.22 -3.70 8.67 -39.48 -0.34 -4.04 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 27 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 28 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 29 H 0.10 2.15 7.93 -51.93 -0.41 1.74 16 30 H 0.05 0.78 8.05 -51.93 -0.42 0.36 16 31 H 0.07 1.45 7.17 -51.93 -0.37 1.08 16 32 H 0.09 1.89 7.30 -52.49 -0.38 1.51 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.27 6.40 8.29 -40.82 -0.34 6.06 16 36 H 0.07 1.03 7.71 -51.93 -0.40 0.63 16 37 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 38 H 0.08 1.47 6.60 -51.93 -0.34 1.13 16 39 H 0.12 1.65 6.28 -52.49 -0.33 1.32 16 LS Contribution 325.45 15.07 4.90 4.90 Total: -1.00 -28.60 325.45 -8.49 -37.09 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.11 Total: 6.08 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -3.63 Total: -26.47 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: 0.58 Total: -29.76 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.20 Total: -5.09 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.60 -8.49 -37.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245678937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.138 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds