Wall clock time and date at job start Tue Mar 31 2020 05:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35801 * 116.99931 * 2 1 4 4 C 1.38989 * 119.90554 * 179.97438 * 3 2 1 5 5 C 1.37753 * 120.08389 * 179.97438 * 4 3 2 6 6 C 1.50695 * 120.04183 * 180.02562 * 5 4 3 7 7 C 1.39726 * 119.91200 * 0.02562 * 5 4 3 8 8 C 1.47856 * 120.08836 * 179.97438 * 7 5 4 9 9 C 1.40328 * 120.35198 * 245.27218 * 8 7 5 10 10 C 1.36625 * 118.60741 * 180.28817 * 9 8 7 11 11 C 1.40909 * 119.25703 * 359.43981 * 10 9 8 12 12 C 1.40938 * 119.67577 * 180.28005 * 11 10 9 13 13 H 1.08003 * 119.99889 * 0.02562 * 12 11 10 14 14 C 1.40067 * 120.00231 * 179.97438 * 12 11 10 15 15 N 1.30736 * 119.99714 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00357 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47279 * 90.00091 * 16 14 12 18 18 H 1.48497 * 109.47719 * 210.00431 * 16 14 12 19 19 H 1.48506 * 109.47070 * 330.00485 * 16 14 12 20 20 N 1.33797 * 120.65076 * 0.29731 * 11 10 9 21 21 C 1.31181 * 121.50401 * 359.97438 * 20 11 10 22 22 C 1.39722 * 119.82331 * 0.26686 * 7 5 4 23 23 C 1.50701 * 120.04705 * 179.70575 * 22 7 5 24 24 C 1.37759 * 119.91147 * 359.45544 * 22 7 5 25 25 H 1.09003 * 109.47487 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47101 * 300.00423 * 1 2 3 27 27 H 1.09000 * 109.46722 * 59.99535 * 1 2 3 28 28 H 1.07994 * 119.95495 * 0.02562 * 4 3 2 29 29 H 1.09005 * 109.47522 * 269.97861 * 6 5 4 30 30 H 1.08999 * 109.47525 * 29.97990 * 6 5 4 31 31 H 1.09006 * 109.47120 * 149.98115 * 6 5 4 32 32 H 1.08000 * 120.69829 * 0.02562 * 9 8 7 33 33 H 1.08002 * 120.37460 * 179.72072 * 10 9 8 34 34 H 0.97001 * 119.99494 * 179.97438 * 15 14 12 35 35 H 1.08002 * 119.65427 * 179.97438 * 21 20 11 36 36 H 1.09004 * 109.46914 * 90.00542 * 23 22 7 37 37 H 1.08994 * 109.47773 * 210.00064 * 23 22 7 38 38 H 1.08997 * 109.47003 * 330.00907 * 23 22 7 39 39 H 1.07995 * 119.96051 * 180.29571 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 3.4336 1.2805 0.0005 5 6 4.0628 2.5059 0.0000 6 6 5.5679 2.5812 0.0000 7 6 3.3036 3.6789 -0.0005 8 6 3.9749 4.9963 -0.0005 9 6 3.8451 5.8583 1.0991 10 6 4.4757 7.0697 1.0589 11 6 5.2424 7.4096 -0.0735 12 6 5.9015 8.6544 -0.1218 13 1 5.8179 9.3422 0.7066 14 6 6.6658 8.9992 -1.2438 15 7 6.7673 8.1663 -2.2465 16 14 7.5388 10.6493 -1.3083 17 1 8.9005 10.5118 -0.7320 18 1 7.6417 11.1002 -2.7194 19 1 6.7682 11.6479 -0.5245 20 7 5.3505 6.5624 -1.1034 21 6 4.7525 5.3949 -1.0963 22 6 1.9084 3.6037 0.0051 23 6 1.0847 4.8657 0.0113 24 6 1.2868 2.3744 -0.0002 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.0196 0.3733 0.0005 29 1 5.9308 2.6002 1.0277 30 1 5.9753 1.7101 -0.5131 31 1 5.8863 3.4879 -0.5145 32 1 3.2555 5.5720 1.9575 33 1 4.3913 7.7571 1.8876 34 1 7.2964 8.4053 -3.0237 35 1 4.8598 4.7344 -1.9441 36 1 0.8818 5.1721 -1.0150 37 1 0.1430 4.6825 0.5286 38 1 1.6336 5.6553 0.5244 39 1 0.2084 2.3153 -0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245679231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:00 Heat of formation + Delta-G solvation = 6.668755 kcal Electronic energy + Delta-G solvation = -21404.660774 eV Core-core repulsion = 18276.873001 eV Total energy + Delta-G solvation = -3127.787773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.98477 -38.48383 -37.12796 -33.75707 -33.22486 -31.60830 -30.54245 -29.24135 -27.68376 -27.10903 -26.03025 -24.95891 -21.87880 -21.77378 -20.31561 -20.07057 -17.55915 -17.20253 -16.16174 -15.76045 -15.62699 -15.43744 -14.36066 -14.18435 -13.87685 -13.50988 -13.21896 -12.89746 -12.74597 -12.70925 -12.39091 -12.21762 -12.06418 -11.86654 -11.76217 -11.49982 -11.27265 -11.14970 -11.05679 -10.74902 -10.52018 -10.44951 -10.29120 -9.91991 -9.39401 -8.31243 -8.24928 -7.95242 -7.58300 -7.20240 -6.46712 -4.56923 1.71864 1.78536 2.68286 3.04372 3.04749 3.07192 3.13686 3.43483 3.88145 4.10847 4.66774 4.98592 5.12874 5.14433 5.22020 5.38267 5.47393 5.57190 5.74926 5.81158 5.88749 5.97658 6.04291 6.05820 6.09333 6.14330 6.15360 6.29863 6.50914 6.62463 6.69374 6.74790 6.81158 6.90270 7.05409 7.15146 7.21338 7.35501 7.54789 7.65867 7.78046 7.98732 8.15743 8.57868 8.86344 10.05645 10.22894 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.035901 B = 0.003803 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.740999 B = 7360.524290 C = 7710.551892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.323 6.323 3 C 0.107 3.893 4 C -0.158 4.158 5 C -0.045 4.045 6 C -0.113 4.113 7 C -0.020 4.020 8 C -0.262 4.262 9 C -0.037 4.037 10 C -0.273 4.273 11 C 0.255 3.745 12 C -0.422 4.422 13 H 0.084 0.916 14 C 0.067 3.933 15 N -0.707 5.707 16 Si 0.908 3.092 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.261 1.261 20 N -0.486 5.486 21 C 0.149 3.851 22 C -0.047 4.047 23 C -0.114 4.114 24 C -0.213 4.213 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.122 0.878 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.274 0.726 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 -9.147 2.481 12.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.237 6.237 3 C 0.063 3.937 4 C -0.176 4.176 5 C -0.045 4.045 6 C -0.170 4.170 7 C -0.021 4.021 8 C -0.267 4.267 9 C -0.061 4.061 10 C -0.296 4.296 11 C 0.131 3.869 12 C -0.453 4.453 13 H 0.102 0.898 14 C -0.159 4.159 15 N -0.328 5.328 16 Si 0.732 3.268 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.185 1.185 20 N -0.198 5.198 21 C -0.018 4.018 22 C -0.047 4.047 23 C -0.170 4.170 24 C -0.232 4.232 25 H 0.112 0.888 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.140 0.860 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.927 -9.038 1.558 11.493 hybrid contribution -0.529 0.450 0.709 0.992 sum -7.456 -8.589 2.267 11.597 Atomic orbital electron populations 1.22948 0.79172 1.03181 1.01173 1.85987 1.20761 1.27569 1.89418 1.18949 0.92134 0.83611 0.99022 1.20093 0.90940 0.97810 1.08782 1.19866 0.96061 0.91314 0.97248 1.20827 0.90796 1.03064 1.02303 1.18566 0.91151 0.92705 0.99706 1.18830 1.12504 0.95642 0.99749 1.20498 0.96571 0.93377 0.95614 1.21379 1.08374 0.98438 1.01414 1.18602 0.89044 0.92440 0.86830 1.19645 1.23562 0.99991 1.02076 0.89772 1.26122 0.96136 0.98528 0.95157 1.70134 1.25916 1.33212 1.03535 0.86319 0.80150 0.81859 0.78495 1.19318 1.20036 1.18487 1.68804 1.22158 1.02138 1.26699 1.22635 0.91085 0.93657 0.94394 1.19847 0.93522 0.94021 0.97296 1.20823 0.98196 0.95712 1.02282 1.20895 0.99105 0.91908 1.11284 0.88815 0.92994 0.92955 0.86023 0.91515 0.92347 0.89947 0.88907 0.88418 0.91446 0.86571 0.91498 0.92762 0.90105 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.57 10.49 -19.12 -0.20 -4.77 16 3 C 0.11 1.70 6.70 -39.03 -0.26 1.43 16 4 C -0.16 -2.56 9.62 -39.48 -0.38 -2.94 16 5 C -0.04 -0.78 5.90 -104.25 -0.62 -1.40 16 6 C -0.11 -1.86 9.61 36.00 0.35 -1.52 16 7 C -0.02 -0.39 5.34 -104.85 -0.56 -0.95 16 8 C -0.26 -5.61 3.95 -104.46 -0.41 -6.02 16 9 C -0.04 -0.80 7.89 -39.38 -0.31 -1.11 16 10 C -0.27 -6.48 9.76 -39.15 -0.38 -6.86 16 11 C 0.25 6.74 6.55 -84.98 -0.56 6.19 16 12 C -0.42 -10.97 9.12 -37.87 -0.35 -11.31 16 13 H 0.08 2.04 7.85 -52.48 -0.41 1.63 16 14 C 0.07 1.66 5.50 -17.33 -0.10 1.56 16 15 N -0.71 -18.36 11.44 55.55 0.64 -17.72 16 16 Si 0.91 18.07 29.56 -169.99 -5.02 13.05 16 17 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 18 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 20 N -0.49 -12.99 7.83 -10.83 -0.08 -13.08 16 21 C 0.15 3.52 9.00 -17.11 -0.15 3.37 16 22 C -0.05 -0.80 5.90 -104.24 -0.62 -1.42 16 23 C -0.11 -1.80 9.61 36.01 0.35 -1.45 16 24 C -0.21 -3.30 8.67 -39.48 -0.34 -3.64 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 27 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 28 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.81 8.08 -51.93 -0.42 0.40 16 31 H 0.08 1.53 5.37 -51.93 -0.28 1.25 16 32 H 0.09 1.82 7.90 -52.49 -0.41 1.40 16 33 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.27 6.44 8.29 -40.82 -0.34 6.10 16 35 H 0.12 2.58 7.88 -52.49 -0.41 2.17 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 38 H 0.08 1.41 5.38 -51.93 -0.28 1.13 16 39 H 0.12 1.53 6.28 -52.49 -0.33 1.20 16 LS Contribution 324.54 15.07 4.89 4.89 Total: -1.00 -28.55 324.54 -8.14 -36.69 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.01 Total: 5.74 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -3.35 Total: -24.79 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 0.55 Total: -30.80 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.20 Total: -4.77 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.02 Total: 13.05 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.55 -8.14 -36.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245679231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.358 kcal (2) G-P(sol) polarization free energy of solvation -28.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds