Wall clock time and date at job start Tue Mar 31 2020 05:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35874 * 117.00399 * 2 1 4 4 C 1.38830 * 119.93901 * 180.02562 * 3 2 1 5 5 C 1.37907 * 120.06273 * 179.97438 * 4 3 2 6 6 C 1.50706 * 120.02859 * 180.02562 * 5 4 3 7 7 C 1.39366 * 119.93777 * 0.02562 * 5 4 3 8 8 C 1.48385 * 120.06176 * 179.97438 * 7 5 4 9 9 C 1.39728 * 120.40849 * 64.99976 * 8 7 5 10 10 N 1.31912 * 121.14573 * 180.02562 * 9 8 7 11 11 C 1.31531 * 122.12138 * 0.02562 * 10 9 8 12 12 C 1.40772 * 120.66548 * 359.97438 * 11 10 9 13 13 C 1.41448 * 120.60027 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99791 * 150.61348 * 13 12 11 15 15 C 1.39930 * 119.99804 * 330.61427 * 13 12 11 16 16 N 1.30830 * 119.99629 * 161.55374 * 15 13 12 17 17 Si 1.86797 * 120.00138 * 341.55086 * 15 13 12 18 18 H 1.48504 * 109.47144 * 95.39530 * 17 15 13 19 19 H 1.48503 * 109.46964 * 215.39043 * 17 15 13 20 20 H 1.48495 * 109.47320 * 335.39114 * 17 15 13 21 21 C 1.39145 * 120.41413 * 245.02241 * 8 7 5 22 22 C 1.39365 * 119.87134 * 0.25306 * 7 5 4 23 23 C 1.50706 * 120.03144 * 179.72517 * 22 7 5 24 24 C 1.37906 * 119.93610 * 359.46788 * 22 7 5 25 25 H 1.08998 * 109.47045 * 300.00091 * 1 2 3 26 26 H 1.09000 * 109.47215 * 59.99677 * 1 2 3 27 27 H 1.08997 * 109.47678 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.96582 * 0.02562 * 4 3 2 29 29 H 1.09000 * 109.46995 * 269.97755 * 6 5 4 30 30 H 1.08999 * 109.47343 * 29.97567 * 6 5 4 31 31 H 1.08996 * 109.47193 * 149.98010 * 6 5 4 32 32 H 1.07990 * 119.43042 * 0.02562 * 9 8 7 33 33 H 1.07999 * 119.66503 * 179.97438 * 11 10 9 34 34 H 0.97000 * 119.99862 * 179.97438 * 16 15 13 35 35 H 1.08002 * 120.95170 * 359.95249 * 21 8 7 36 36 H 1.09000 * 109.46851 * 90.00316 * 23 22 7 37 37 H 1.09000 * 109.46940 * 210.00161 * 23 22 7 38 38 H 1.08997 * 109.47038 * 330.00171 * 23 22 7 39 39 H 1.08002 * 119.97016 * 180.27583 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 3.4324 1.2817 -0.0005 5 6 4.0612 2.5090 -0.0011 6 6 5.5664 2.5853 -0.0022 7 6 3.3035 3.6787 -0.0005 8 6 3.9773 5.0008 -0.0005 9 6 4.7517 5.3999 -1.0929 10 7 5.3574 6.5717 -1.1081 11 6 5.2666 7.4189 -0.1061 12 6 4.5077 7.1013 1.0362 13 6 4.4106 8.0136 2.1127 14 1 3.5255 8.0265 2.7315 15 6 5.4612 8.8996 2.3759 16 7 5.2520 9.9633 3.1083 17 14 7.1625 8.5634 1.6817 18 1 7.3341 9.3091 0.4090 19 1 8.1914 9.0056 2.6570 20 1 7.3147 7.1083 1.4273 21 6 3.8461 5.8583 1.0874 22 6 1.9119 3.6043 0.0059 23 6 1.0890 4.8668 0.0127 24 6 1.2885 2.3742 0.0006 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 4.0190 0.3749 -0.0014 29 1 5.9300 2.6041 1.0251 30 1 5.9739 1.7146 -0.5160 31 1 5.8838 3.4923 -0.5166 32 1 4.8563 4.7377 -1.9395 33 1 5.7795 8.3678 -0.1603 34 1 5.9804 10.5772 3.2911 35 1 3.2542 5.5790 1.9466 36 1 0.8858 5.1736 -1.0133 37 1 0.1475 4.6841 0.5306 38 1 1.6387 5.6559 0.5258 39 1 0.2100 2.3158 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245679890.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:03 Heat of formation + Delta-G solvation = -1.565619 kcal Electronic energy + Delta-G solvation = -21570.412420 eV Core-core repulsion = 18442.267577 eV Total energy + Delta-G solvation = -3128.144842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.22700 -38.83252 -37.40736 -33.97913 -33.41650 -32.25311 -31.17017 -29.33910 -27.79917 -26.75749 -26.17273 -25.46935 -22.68750 -21.40548 -20.58501 -20.34965 -17.65687 -17.36317 -16.38015 -16.20074 -15.75613 -15.38530 -15.00597 -14.67080 -14.04153 -13.57257 -13.43586 -13.08752 -12.91961 -12.86347 -12.68508 -12.50191 -12.07539 -12.03512 -11.96107 -11.78622 -11.65168 -11.32432 -11.07444 -10.92511 -10.69803 -10.59233 -10.39269 -10.02464 -9.41707 -8.60612 -8.44412 -8.22374 -7.98730 -7.44744 -7.10089 -4.65403 1.51199 1.54438 2.37420 2.53031 3.06624 3.14937 3.24512 3.28660 3.86903 3.89733 4.43067 4.85351 4.97132 5.04434 5.07210 5.17922 5.26718 5.32118 5.37319 5.51756 5.68628 5.78141 5.79455 5.90626 5.94909 5.97586 6.08750 6.18446 6.26183 6.31218 6.43996 6.52190 6.61114 6.63687 6.86379 6.94778 6.96189 7.09719 7.36083 7.43063 7.49600 7.83601 8.12172 8.37044 8.57013 9.35626 9.91041 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027583 B = 0.004463 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.861512 B = 6272.350203 C = 6692.070813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.122 3.878 4 C -0.160 4.160 5 C -0.030 4.030 6 C -0.121 4.121 7 C -0.061 4.061 8 C -0.055 4.055 9 C -0.026 4.026 10 N -0.455 5.455 11 C -0.029 4.029 12 C 0.046 3.954 13 C -0.435 4.435 14 H 0.094 0.906 15 C 0.085 3.915 16 N -0.797 5.797 17 Si 0.908 3.092 18 H -0.264 1.264 19 H -0.286 1.286 20 H -0.247 1.247 21 C -0.164 4.164 22 C -0.029 4.029 23 C -0.124 4.124 24 C -0.215 4.215 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.288 0.712 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.748 -13.459 -3.801 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.077 3.923 4 C -0.179 4.179 5 C -0.030 4.030 6 C -0.178 4.178 7 C -0.062 4.062 8 C -0.057 4.057 9 C -0.183 4.183 10 N -0.162 5.162 11 C -0.191 4.191 12 C 0.042 3.958 13 C -0.464 4.464 14 H 0.112 0.888 15 C -0.136 4.136 16 N -0.421 5.421 17 Si 0.733 3.267 18 H -0.190 1.190 19 H -0.213 1.213 20 H -0.170 1.170 21 C -0.190 4.190 22 C -0.029 4.029 23 C -0.180 4.180 24 C -0.234 4.234 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.144 0.856 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.133 -13.178 -4.362 14.800 hybrid contribution -0.162 -0.120 0.637 0.668 sum -5.295 -13.299 -3.726 14.791 Atomic orbital electron populations 1.22991 0.78857 1.03436 1.01338 1.86022 1.21028 1.27333 1.89125 1.18944 0.92163 0.83762 0.97425 1.20100 0.91056 0.97798 1.08941 1.19714 0.96100 0.91096 0.96136 1.20929 0.90609 1.03423 1.02796 1.18599 0.91873 0.92554 1.03169 1.19226 0.98052 0.92417 0.96012 1.21769 1.03134 0.95241 0.98174 1.66948 1.17949 1.02845 1.28410 1.22536 1.06387 0.99117 0.91059 1.18546 0.91879 0.91796 0.93615 1.19439 1.03878 1.11740 1.11296 0.88830 1.26157 1.01909 0.92385 0.93102 1.69679 1.35074 1.07888 1.29413 0.86373 0.80093 0.81807 0.78382 1.18970 1.21325 1.16982 1.21347 1.06266 0.93568 0.97810 1.19722 0.92964 0.94477 0.95740 1.20956 0.98854 0.95605 1.02585 1.20933 0.99468 0.91696 1.11318 0.92782 0.92806 0.88616 0.85582 0.91041 0.91872 0.89815 0.85777 0.85327 0.90091 0.87165 0.91211 0.92114 0.89518 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.18 10.49 -19.34 -0.20 -4.38 16 3 C 0.12 1.77 6.69 -39.14 -0.26 1.51 16 4 C -0.16 -2.39 9.63 -39.48 -0.38 -2.77 16 5 C -0.03 -0.49 5.90 -104.32 -0.62 -1.11 16 6 C -0.12 -1.81 9.60 36.01 0.35 -1.47 16 7 C -0.06 -1.09 5.34 -104.88 -0.56 -1.65 16 8 C -0.06 -1.13 3.93 -104.83 -0.41 -1.54 16 9 C -0.03 -0.56 8.99 -16.96 -0.15 -0.71 16 10 N -0.45 -10.77 10.32 -12.28 -0.13 -10.90 16 11 C -0.03 -0.72 8.38 -16.72 -0.14 -0.86 16 12 C 0.05 1.14 5.12 -106.71 -0.55 0.60 16 13 C -0.43 -11.23 9.60 -37.73 -0.36 -11.60 16 14 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 15 C 0.08 2.14 5.41 -17.34 -0.09 2.04 16 16 N -0.80 -20.34 13.93 55.55 0.77 -19.57 16 17 Si 0.91 20.26 24.52 -169.99 -4.17 16.09 16 18 H -0.26 -5.77 6.71 56.52 0.38 -5.39 16 19 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.25 -5.75 6.86 56.52 0.39 -5.36 16 21 C -0.16 -3.67 7.71 -38.24 -0.29 -3.96 16 22 C -0.03 -0.47 5.89 -104.32 -0.61 -1.08 16 23 C -0.12 -1.88 9.60 36.01 0.35 -1.53 16 24 C -0.22 -3.09 8.68 -39.48 -0.34 -3.43 16 25 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 26 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.08 1.39 5.36 -51.93 -0.28 1.12 16 32 H 0.12 2.40 7.87 -52.49 -0.41 1.99 16 33 H 0.13 3.15 4.70 -52.49 -0.25 2.90 16 34 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 35 H 0.11 2.36 7.88 -52.49 -0.41 1.95 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 38 H 0.09 1.51 5.35 -51.93 -0.28 1.23 16 39 H 0.12 1.46 6.28 -52.49 -0.33 1.13 16 LS Contribution 317.97 15.07 4.79 4.79 Total: -1.00 -27.73 317.97 -6.90 -34.64 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -4.88 Total: 5.65 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -3.09 Total: -26.32 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.65 Total: -30.47 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.20 Total: -4.38 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.17 Total: 16.09 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.73 -6.90 -34.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245679890.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.072 kcal (2) G-P(sol) polarization free energy of solvation -27.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds