Wall clock time and date at job start Tue Mar 31 2020 05:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37950 * 119.92779 * 2 1 4 4 C 1.39589 * 119.85362 * 180.23071 * 3 2 1 5 5 C 1.47961 * 120.14689 * 179.76723 * 4 3 2 6 6 C 1.39891 * 119.45222 * 310.22322 * 5 4 3 7 7 C 1.36607 * 119.47079 * 180.21100 * 6 5 4 8 8 C 1.41305 * 118.41028 * 359.53035 * 7 6 5 9 9 C 1.41054 * 120.55535 * 180.23156 * 8 7 6 10 10 H 1.07994 * 120.00329 * 207.08244 * 9 8 7 11 11 C 1.40036 * 119.99536 * 27.07668 * 9 8 7 12 12 N 1.30778 * 120.00280 * 16.01396 * 11 9 8 13 13 Si 1.86806 * 119.99618 * 196.00861 * 11 9 8 14 14 H 1.48503 * 109.46659 * 60.00333 * 13 11 9 15 15 H 1.48498 * 109.46967 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47235 * 300.00687 * 13 11 9 17 17 C 1.40947 * 118.89277 * 0.25238 * 8 7 6 18 18 N 1.31264 * 120.40077 * 359.97438 * 17 8 7 19 19 C 1.39634 * 119.70793 * 359.48794 * 4 3 2 20 20 C 1.50698 * 120.07478 * 180.23186 * 19 4 3 21 21 C 1.37915 * 119.85135 * 0.25745 * 19 4 3 22 22 C 1.38366 * 119.92605 * 179.71566 * 2 1 3 23 23 C 1.50700 * 119.85317 * 0.04916 * 22 2 1 24 24 O 1.42897 * 109.47229 * 179.97438 * 23 22 2 25 25 H 1.09000 * 109.47245 * 270.27887 * 1 2 3 26 26 H 1.09001 * 109.47033 * 30.27962 * 1 2 3 27 27 H 1.09004 * 109.47434 * 150.28202 * 1 2 3 28 28 H 1.08000 * 120.07612 * 359.97438 * 3 2 1 29 29 H 1.08004 * 120.26939 * 359.97438 * 6 5 4 30 30 H 1.08004 * 120.79563 * 179.80572 * 7 6 5 31 31 H 0.96999 * 120.00205 * 180.02562 * 12 11 9 32 32 H 1.08002 * 119.79671 * 180.02562 * 17 8 7 33 33 H 1.09001 * 109.47432 * 84.61326 * 20 19 4 34 34 H 1.08995 * 109.47143 * 204.61899 * 20 19 4 35 35 H 1.09004 * 109.46761 * 324.61415 * 20 19 4 36 36 H 1.07995 * 119.92160 * 179.97438 * 21 19 4 37 37 H 1.08999 * 109.47467 * 299.97490 * 23 22 2 38 38 H 1.09002 * 109.47134 * 59.97312 * 23 22 2 39 39 H 0.96701 * 114.00401 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1955 0.0000 4 6 3.5911 1.1937 -0.0049 5 6 4.3358 2.4723 -0.0101 6 6 3.9991 3.4606 -0.9410 7 6 4.6893 4.6395 -0.9490 8 6 5.7208 4.8211 -0.0005 9 6 6.4591 6.0224 0.0349 10 1 7.4714 6.0233 0.4110 11 6 5.8794 7.2140 -0.4180 12 7 4.5835 7.2920 -0.5762 13 14 6.9571 8.6923 -0.7958 14 1 7.9277 8.3376 -1.8623 15 1 6.1072 9.8198 -1.2557 16 1 7.6933 9.0944 0.4297 17 6 5.9999 3.7815 0.9095 18 7 5.3109 2.6648 0.8740 19 6 4.2816 -0.0199 0.0011 20 6 5.7885 -0.0315 0.0012 21 6 3.5813 -1.2081 0.0064 22 6 2.1973 -1.1992 0.0060 23 6 1.4387 -2.5013 0.0113 24 8 2.3631 -3.5911 0.0163 25 1 -0.3634 0.0050 1.0276 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3634 -0.8925 -0.5095 28 1 1.6553 2.1309 -0.0004 29 1 3.2023 3.2916 -1.6503 30 1 4.4493 5.4159 -1.6604 31 1 4.1820 8.1172 -0.8902 32 1 6.7849 3.9049 1.6409 33 1 6.1526 0.0672 1.0238 34 1 6.1446 -0.9705 -0.4223 35 1 6.1582 0.8006 -0.5980 36 1 4.1142 -2.1474 0.0106 37 1 0.8115 -2.5529 0.9012 38 1 0.8122 -2.5605 -0.8787 39 1 1.9439 -4.4625 0.0203 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245697168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:39 Heat of formation + Delta-G solvation = -20.251148 kcal Electronic energy + Delta-G solvation = -21095.923598 eV Core-core repulsion = 17966.968491 eV Total energy + Delta-G solvation = -3128.955108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.53494 -38.16362 -36.58782 -34.36787 -33.47608 -31.62391 -30.66929 -29.56791 -28.77085 -26.64525 -25.15967 -24.03936 -21.95553 -21.73865 -20.90805 -19.20554 -17.44795 -17.39226 -15.87223 -15.44606 -15.14521 -15.06976 -14.81265 -14.36104 -13.92478 -13.58977 -13.35370 -12.97063 -12.82757 -12.54135 -12.39126 -12.29540 -12.05379 -11.70128 -11.61277 -11.41737 -11.30894 -11.18781 -11.05729 -10.74407 -10.44123 -10.41317 -10.25523 -9.88328 -9.46513 -8.41937 -8.29094 -8.08918 -7.88894 -7.35424 -6.95829 -4.55548 1.64988 1.90000 2.60914 2.94366 2.96649 2.99042 3.13281 3.77297 4.15070 4.19768 4.53139 5.02460 5.15436 5.23573 5.32147 5.40994 5.48828 5.56832 5.62359 5.73152 5.83354 5.94409 6.04797 6.11095 6.22771 6.34396 6.45285 6.54130 6.62246 6.68336 6.76626 6.85380 6.90281 6.96947 7.04298 7.21164 7.32077 7.45877 7.56996 7.71774 7.79891 7.88432 8.34441 8.56103 8.63929 9.56863 9.95129 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.035007 B = 0.003610 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.646806 B = 7753.343402 C = 8361.739673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.116 4.116 4 C 0.020 3.980 5 C 0.000 4.000 6 C -0.123 4.123 7 C -0.139 4.139 8 C 0.071 3.929 9 C -0.444 4.444 10 H 0.085 0.915 11 C 0.074 3.926 12 N -0.784 5.784 13 Si 0.914 3.086 14 H -0.261 1.261 15 H -0.277 1.277 16 H -0.263 1.263 17 C -0.020 4.020 18 N -0.444 5.444 19 C -0.079 4.079 20 C -0.096 4.096 21 C -0.096 4.096 22 C -0.116 4.116 23 C 0.126 3.874 24 O -0.569 6.569 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.286 0.714 32 H 0.128 0.872 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.125 0.875 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.176 -11.358 -1.215 12.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.134 4.134 4 C 0.020 3.980 5 C -0.135 4.135 6 C -0.143 4.143 7 C -0.165 4.165 8 C 0.067 3.933 9 C -0.474 4.474 10 H 0.103 0.897 11 C -0.146 4.146 12 N -0.408 5.408 13 Si 0.738 3.262 14 H -0.186 1.186 15 H -0.202 1.202 16 H -0.187 1.187 17 C -0.184 4.184 18 N -0.151 5.151 19 C -0.079 4.079 20 C -0.153 4.153 21 C -0.114 4.114 22 C -0.116 4.116 23 C 0.049 3.951 24 O -0.374 6.374 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.138 0.862 29 H 0.116 0.884 30 H 0.141 0.859 31 H 0.097 0.903 32 H 0.146 0.854 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.142 0.858 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.766 -11.340 -0.701 12.741 hybrid contribution -0.343 1.180 -0.761 1.445 sum -6.110 -10.160 -1.462 11.945 Atomic orbital electron populations 1.20758 0.91863 1.02288 1.01901 1.19352 0.95251 0.92252 1.02344 1.21024 0.93362 0.96913 1.02150 1.18553 0.91843 0.91743 0.95897 1.18738 1.00235 0.93999 1.00499 1.21250 0.99582 0.94446 0.99016 1.21259 0.99206 0.96062 0.99945 1.18575 0.91712 0.93383 0.89663 1.19574 1.00600 0.91652 1.35533 0.89713 1.26029 0.95108 1.00944 0.92521 1.69762 1.10987 1.28653 1.31376 0.86253 0.80488 0.79308 0.80131 1.18587 1.20155 1.18697 1.22481 1.03082 0.91680 1.01125 1.67085 1.04202 1.23088 1.20741 1.20034 0.96280 0.91930 0.99703 1.20609 0.91158 1.00888 1.02637 1.20666 0.93179 0.97402 1.00107 1.19348 0.94109 0.92576 1.05587 1.20825 0.90159 0.84754 0.99397 1.86495 1.36438 1.16706 1.97735 0.91541 0.91588 0.92138 0.86209 0.88439 0.85920 0.90317 0.85423 0.90994 0.93333 0.91512 0.85751 0.92914 0.92895 0.77689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.59 36.00 0.35 -0.95 16 2 C -0.09 -1.44 5.87 -104.68 -0.61 -2.05 16 3 C -0.12 -2.12 9.13 -39.18 -0.36 -2.48 16 4 C 0.02 0.43 5.59 -104.89 -0.59 -0.16 16 5 C 0.00 0.01 5.40 -82.75 -0.45 -0.44 16 6 C -0.12 -2.88 9.44 -39.55 -0.37 -3.26 16 7 C -0.14 -3.52 8.72 -39.01 -0.34 -3.86 16 8 C 0.07 1.84 5.56 -106.64 -0.59 1.25 16 9 C -0.44 -11.15 9.06 -37.84 -0.34 -11.49 16 10 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 11 C 0.07 1.75 5.18 -17.33 -0.09 1.66 16 12 N -0.78 -19.26 11.05 55.55 0.61 -18.65 16 13 Si 0.91 17.62 29.59 -169.99 -5.03 12.59 16 14 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 15 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 16 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 17 C -0.02 -0.49 10.97 -16.77 -0.18 -0.67 16 18 N -0.44 -10.82 8.86 -9.10 -0.08 -10.91 16 19 C -0.08 -1.51 5.91 -104.22 -0.62 -2.13 16 20 C -0.10 -1.75 8.76 36.00 0.32 -1.44 16 21 C -0.10 -1.65 8.99 -39.64 -0.36 -2.00 16 22 C -0.12 -1.80 5.89 -104.51 -0.62 -2.42 16 23 C 0.13 1.45 6.14 36.01 0.22 1.67 16 24 O -0.57 -6.43 12.12 -35.23 -0.43 -6.86 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 27 H 0.06 0.58 6.62 -51.93 -0.34 0.24 16 28 H 0.12 2.14 8.02 -52.49 -0.42 1.72 16 29 H 0.10 2.07 8.02 -52.48 -0.42 1.65 16 30 H 0.12 3.14 6.38 -52.48 -0.33 2.80 16 31 H 0.29 6.37 8.30 -40.82 -0.34 6.03 16 32 H 0.13 2.92 8.06 -52.49 -0.42 2.50 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 35 H 0.07 1.34 7.05 -51.93 -0.37 0.97 16 36 H 0.12 2.03 6.99 -52.49 -0.37 1.66 16 37 H 0.05 0.53 8.13 -51.93 -0.42 0.11 16 38 H 0.05 0.52 7.48 -51.93 -0.39 0.13 16 39 H 0.38 2.21 9.12 45.56 0.42 2.62 16 LS Contribution 327.63 15.07 4.94 4.94 Total: -1.00 -28.88 327.63 -8.92 -37.80 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -4.30 Total: 9.86 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -4.63 Total: -28.78 kcal Atomic # 7 Polarization: -30.09 SS G_CDS: 0.53 Total: -29.56 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.43 Total: -6.86 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.88 -8.92 -37.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245697168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.549 kcal (2) G-P(sol) polarization free energy of solvation -28.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds