Wall clock time and date at job start Tue Mar 31 2020 05:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38036 * 119.94202 * 2 1 4 4 C 1.39329 * 119.87689 * 179.97438 * 3 2 1 5 5 C 1.48361 * 120.11990 * 180.02562 * 4 3 2 6 6 C 1.38893 * 119.61770 * 312.72675 * 5 4 3 7 7 C 1.40844 * 118.76993 * 180.02562 * 6 5 4 8 8 C 1.41520 * 120.99227 * 179.97438 * 7 6 5 9 9 H 1.08007 * 119.99946 * 150.04540 * 8 7 6 10 10 C 1.40044 * 120.00150 * 330.05243 * 8 7 6 11 11 N 1.30737 * 119.99610 * 348.26585 * 10 8 7 12 12 Si 1.86794 * 120.00372 * 168.26341 * 10 8 7 13 13 H 1.48502 * 109.47222 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47014 * 119.99989 * 12 10 8 15 15 H 1.48498 * 109.47638 * 239.99927 * 12 10 8 16 16 C 1.41145 * 118.02386 * 359.97438 * 7 6 5 17 17 C 1.37751 * 119.06853 * 0.02562 * 16 7 6 18 18 N 1.31918 * 121.16031 * 359.72057 * 17 16 7 19 19 C 1.39368 * 119.75522 * 0.02562 * 4 3 2 20 20 C 1.50701 * 120.06138 * 179.97438 * 19 4 3 21 21 C 1.37996 * 119.87576 * 359.72464 * 19 4 3 22 22 C 1.38308 * 119.93800 * 179.97438 * 2 1 3 23 23 C 1.50701 * 119.87170 * 0.02562 * 22 2 1 24 24 O 1.42907 * 109.46648 * 180.02562 * 23 22 2 25 25 H 1.08996 * 109.46945 * 270.01706 * 1 2 3 26 26 H 1.08998 * 109.46875 * 30.01891 * 1 2 3 27 27 H 1.09000 * 109.47211 * 150.01805 * 1 2 3 28 28 H 1.07997 * 120.05720 * 359.96297 * 3 2 1 29 29 H 1.08005 * 120.61305 * 359.97310 * 6 5 4 30 30 H 0.97002 * 119.99895 * 179.97438 * 11 10 8 31 31 H 1.07991 * 120.46951 * 179.97438 * 16 7 6 32 32 H 1.08005 * 119.42055 * 179.97438 * 17 16 7 33 33 H 1.09005 * 109.47369 * 84.46076 * 20 19 4 34 34 H 1.09001 * 109.47240 * 204.46600 * 20 19 4 35 35 H 1.08996 * 109.46836 * 324.46002 * 20 19 4 36 36 H 1.08008 * 119.93972 * 180.29446 * 21 19 4 37 37 H 1.09003 * 109.47379 * 299.99809 * 23 22 2 38 38 H 1.08998 * 109.47601 * 60.00293 * 23 22 2 39 39 H 0.96700 * 113.99669 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1961 0.0000 4 6 3.5893 1.1945 0.0005 5 6 4.3352 2.4770 0.0011 6 6 3.9725 3.4825 -0.8858 7 6 4.6932 4.6925 -0.8703 8 6 4.3641 5.7480 -1.7538 9 1 4.5388 6.7725 -1.4598 10 6 3.8119 5.4641 -3.0090 11 7 3.8108 4.2370 -3.4602 12 14 3.0769 6.8384 -4.0386 13 1 3.2009 8.1251 -3.3077 14 1 3.8022 6.9308 -5.3311 15 1 1.6426 6.5519 -4.2953 16 6 5.7534 4.8212 0.0525 17 6 6.0399 3.7686 0.8938 18 7 5.3388 2.6519 0.8531 19 6 4.2796 -0.0162 0.0005 20 6 5.7866 -0.0259 0.0005 21 6 3.5806 -1.2060 0.0057 22 6 2.1973 -1.1985 0.0005 23 6 1.4394 -2.5011 0.0005 24 8 2.3645 -3.5903 0.0017 25 1 -0.3633 0.0003 1.0276 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8901 -0.5135 28 1 1.6560 2.1314 -0.0006 29 1 3.1536 3.3387 -1.5751 30 1 3.4279 4.0402 -4.3295 31 1 6.3323 5.7316 0.0980 32 1 6.8502 3.8608 1.6018 33 1 6.1506 0.0709 1.0234 34 1 6.1438 -0.9637 -0.4251 35 1 6.1552 0.8079 -0.5968 36 1 4.1145 -2.1448 0.0106 37 1 0.8122 -2.5566 0.8903 38 1 0.8129 -2.5571 -0.8897 39 1 1.9458 -4.4620 0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245698186.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:47 Heat of formation + Delta-G solvation = -18.958057 kcal Electronic energy + Delta-G solvation = -21442.866283 eV Core-core repulsion = 18313.967248 eV Total energy + Delta-G solvation = -3128.899035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.56387 -38.13166 -36.56576 -34.23108 -33.55759 -31.72806 -30.60637 -29.17837 -28.63929 -25.99163 -25.78631 -24.37368 -22.16246 -21.42375 -20.95065 -19.23593 -17.44251 -17.24359 -15.65674 -15.36491 -15.06872 -14.87715 -14.65849 -14.26969 -14.25267 -13.55790 -13.33821 -13.00276 -12.84454 -12.60287 -12.48618 -12.30073 -12.03647 -11.89226 -11.45010 -11.38024 -11.23077 -11.05988 -10.92729 -10.60363 -10.44460 -10.26765 -10.22090 -9.87189 -9.44678 -8.44733 -8.04774 -7.97319 -7.93459 -7.25625 -6.83197 -4.62243 1.63048 1.90843 2.73407 2.79739 3.02000 3.07108 3.20070 3.85541 4.18299 4.21026 4.63752 5.02455 5.13109 5.24493 5.34332 5.42043 5.43853 5.57154 5.63287 5.75972 5.80624 5.95806 6.04955 6.10804 6.24713 6.37689 6.46649 6.54494 6.68925 6.75685 6.79850 6.88457 6.96199 7.02694 7.09494 7.20786 7.37656 7.42330 7.51066 7.59887 7.84152 8.07494 8.41074 8.69192 8.73147 9.52834 10.10193 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.017702 B = 0.004959 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.381498 B = 5644.700447 C = 6610.824951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.102 4.102 4 C -0.001 4.001 5 C 0.136 3.864 6 C -0.179 4.179 7 C 0.128 3.872 8 C -0.461 4.461 9 H 0.082 0.918 10 C 0.077 3.923 11 N -0.792 5.792 12 Si 0.912 3.088 13 H -0.260 1.260 14 H -0.273 1.273 15 H -0.271 1.271 16 C -0.268 4.268 17 C 0.098 3.902 18 N -0.553 5.553 19 C -0.067 4.067 20 C -0.097 4.097 21 C -0.099 4.099 22 C -0.106 4.106 23 C 0.125 3.875 24 O -0.568 6.568 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.282 0.718 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.126 0.874 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.018 -9.672 2.974 11.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.121 4.121 4 C -0.002 4.002 5 C 0.005 3.995 6 C -0.202 4.202 7 C 0.120 3.880 8 C -0.493 4.493 9 H 0.100 0.900 10 C -0.142 4.142 11 N -0.418 5.418 12 Si 0.736 3.264 13 H -0.183 1.183 14 H -0.198 1.198 15 H -0.196 1.196 16 C -0.291 4.291 17 C -0.057 4.057 18 N -0.268 5.268 19 C -0.068 4.068 20 C -0.153 4.153 21 C -0.117 4.117 22 C -0.107 4.107 23 C 0.048 3.952 24 O -0.373 6.373 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.144 0.856 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.435 -10.000 3.351 11.865 hybrid contribution -0.913 0.982 -1.246 1.831 sum -6.348 -9.018 2.105 11.227 Atomic orbital electron populations 1.20755 0.91706 1.02470 1.01861 1.19359 0.95384 0.92163 1.02587 1.20976 0.93178 0.97176 1.00737 1.18630 0.92200 0.91875 0.97460 1.19243 0.93911 0.92046 0.94256 1.22175 1.02444 0.94592 1.00953 1.17787 0.88206 0.92331 0.89685 1.19597 1.36563 0.94324 0.98779 0.90019 1.25936 0.93414 0.96558 0.98310 1.69754 1.33447 1.20281 1.18319 0.86199 0.79237 0.81516 0.79453 1.18331 1.19836 1.19625 1.21985 1.01994 1.00364 1.04732 1.21862 0.97172 0.89669 0.97044 1.67432 1.09435 1.24817 1.25087 1.19969 0.96413 0.91807 0.98570 1.20635 0.90977 1.01059 1.02666 1.20675 0.93208 0.97397 1.00452 1.19365 0.94129 0.92653 1.04521 1.20841 0.90164 0.84711 0.99523 1.86497 1.36397 1.16708 1.97743 0.91532 0.91458 0.92076 0.85934 0.85695 0.90654 0.88044 0.86030 0.90848 0.93277 0.91362 0.85576 0.92810 0.92723 0.77661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.59 36.01 0.35 -1.02 16 2 C -0.09 -1.55 5.88 -104.67 -0.61 -2.17 16 3 C -0.10 -1.97 9.07 -39.25 -0.36 -2.33 16 4 C 0.00 -0.02 5.61 -104.90 -0.59 -0.61 16 5 C 0.14 3.31 5.47 -83.04 -0.45 2.86 16 6 C -0.18 -4.65 8.09 -38.35 -0.31 -4.96 16 7 C 0.13 3.37 5.55 -106.56 -0.59 2.78 16 8 C -0.46 -11.97 9.11 -37.66 -0.34 -12.31 16 9 H 0.08 2.03 7.87 -52.48 -0.41 1.62 16 10 C 0.08 1.88 5.26 -17.34 -0.09 1.79 16 11 N -0.79 -20.28 11.05 55.55 0.61 -19.67 16 12 Si 0.91 18.27 29.58 -169.99 -5.03 13.24 16 13 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 14 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 15 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 16 C -0.27 -6.48 9.90 -38.66 -0.38 -6.86 16 17 C 0.10 2.25 11.15 -17.69 -0.20 2.05 16 18 N -0.55 -13.23 8.69 -9.94 -0.09 -13.31 16 19 C -0.07 -1.34 5.90 -104.29 -0.62 -1.95 16 20 C -0.10 -1.83 8.70 36.01 0.31 -1.51 16 21 C -0.10 -1.77 9.00 -39.63 -0.36 -2.12 16 22 C -0.11 -1.71 5.88 -104.56 -0.62 -2.33 16 23 C 0.12 1.49 6.14 36.01 0.22 1.71 16 24 O -0.57 -6.59 12.13 -35.23 -0.43 -7.02 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 27 H 0.06 0.63 6.62 -51.93 -0.34 0.28 16 28 H 0.12 2.32 7.97 -52.49 -0.42 1.91 16 29 H 0.13 3.33 6.39 -52.48 -0.34 3.00 16 30 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 31 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 32 H 0.12 2.37 8.06 -52.48 -0.42 1.94 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 35 H 0.07 1.45 6.99 -51.93 -0.36 1.09 16 36 H 0.13 2.11 6.99 -52.48 -0.37 1.74 16 37 H 0.05 0.55 8.13 -51.93 -0.42 0.13 16 38 H 0.05 0.57 7.48 -51.93 -0.39 0.18 16 39 H 0.38 2.31 9.12 45.56 0.42 2.72 16 LS Contribution 327.48 15.07 4.94 4.94 Total: -1.00 -29.85 327.48 -8.93 -38.78 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -4.30 Total: 10.02 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -4.64 Total: -26.98 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.53 Total: -32.98 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.43 Total: -7.02 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.85 -8.93 -38.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245698186.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.825 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds