Wall clock time and date at job start Tue Mar 31 2020 05:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37946 * 119.92955 * 2 1 4 4 C 1.39601 * 119.85459 * 179.97438 * 3 2 1 5 5 C 1.47968 * 120.14366 * 180.02562 * 4 3 2 6 6 C 1.40264 * 120.35087 * 309.72582 * 5 4 3 7 7 C 1.36683 * 118.60738 * 179.75086 * 6 5 4 8 8 C 1.40875 * 119.25245 * 0.52396 * 7 6 5 9 9 C 1.40990 * 119.68505 * 179.71839 * 8 7 6 10 10 H 1.08004 * 119.99742 * 353.67961 * 9 8 7 11 11 C 1.40104 * 120.00402 * 173.67816 * 9 8 7 12 12 N 1.30713 * 119.99775 * 6.30619 * 11 9 8 13 13 Si 1.86791 * 120.00039 * 186.30211 * 11 9 8 14 14 H 1.48500 * 109.47482 * 94.98913 * 13 11 9 15 15 H 1.48502 * 109.47248 * 214.98745 * 13 11 9 16 16 H 1.48509 * 109.47303 * 334.98472 * 13 11 9 17 17 N 1.33786 * 120.63853 * 359.73947 * 8 7 6 18 18 C 1.31191 * 121.50451 * 359.97438 * 17 8 7 19 19 C 1.39635 * 119.70858 * 0.02562 * 4 3 2 20 20 C 1.50696 * 120.07426 * 179.97438 * 19 4 3 21 21 C 1.37914 * 119.85156 * 359.76219 * 19 4 3 22 22 C 1.38371 * 119.92469 * 180.02562 * 2 1 3 23 23 C 1.50705 * 119.85568 * 359.97438 * 22 2 1 24 24 O 1.42899 * 109.47123 * 180.02562 * 23 22 2 25 25 H 1.09003 * 109.46716 * 269.97672 * 1 2 3 26 26 H 1.08994 * 109.47198 * 29.97519 * 1 2 3 27 27 H 1.08996 * 109.47151 * 149.97916 * 1 2 3 28 28 H 1.08009 * 120.07249 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.69086 * 0.02562 * 6 5 4 30 30 H 1.07994 * 120.37722 * 180.24370 * 7 6 5 31 31 H 0.97004 * 119.99628 * 180.02562 * 12 11 9 32 32 H 1.08003 * 119.65912 * 180.02562 * 18 17 8 33 33 H 1.09003 * 109.47162 * 90.00005 * 20 19 4 34 34 H 1.09011 * 109.47201 * 209.99897 * 20 19 4 35 35 H 1.08998 * 109.47341 * 330.00014 * 20 19 4 36 36 H 1.08005 * 119.92570 * 180.25317 * 21 19 4 37 37 H 1.08994 * 109.47206 * 299.99954 * 23 22 2 38 38 H 1.09004 * 109.46681 * 59.99977 * 23 22 2 39 39 H 0.96705 * 113.99987 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1955 0.0000 4 6 3.5913 1.1937 0.0005 5 6 4.3360 2.4723 0.0011 6 6 4.0246 3.4743 -0.9297 7 6 4.7317 4.6434 -0.8939 8 6 5.7529 4.8013 0.0637 9 6 6.4920 6.0012 0.1049 10 1 6.3453 6.7522 -0.6573 11 6 7.4166 6.2195 1.1346 12 7 7.6848 5.2641 1.9855 13 14 8.2663 7.8756 1.2914 14 1 7.5239 8.7233 2.2586 15 1 9.6563 7.6751 1.7741 16 1 8.2943 8.5451 -0.0339 17 7 6.0285 3.8233 0.9340 18 6 5.3635 2.6925 0.9278 19 6 4.2817 -0.0200 0.0005 20 6 5.7886 -0.0316 0.0005 21 6 3.5815 -1.2082 0.0050 22 6 2.1973 -1.1992 -0.0005 23 6 1.4388 -2.5015 -0.0005 24 8 2.3632 -3.5912 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5134 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6553 2.1309 -0.0004 29 1 3.2396 3.3267 -1.6566 30 1 4.5131 5.4356 -1.5946 31 1 8.3247 5.4154 2.6987 32 1 5.6106 1.9232 1.6444 33 1 6.1520 -0.0344 1.0282 34 1 6.1452 -0.9245 -0.5133 35 1 6.1588 0.8555 -0.5133 36 1 4.1143 -2.1476 0.0091 37 1 0.8123 -2.5570 0.8896 38 1 0.8116 -2.5565 -0.8903 39 1 1.9440 -4.4626 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245698879.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:46 Heat of formation + Delta-G solvation = -11.283248 kcal Electronic energy + Delta-G solvation = -21130.942650 eV Core-core repulsion = 18002.376420 eV Total energy + Delta-G solvation = -3128.566230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.53766 -38.06257 -36.60854 -34.18270 -33.38304 -31.72781 -30.55249 -29.40819 -28.85736 -26.66093 -25.12668 -24.04639 -22.07980 -21.49168 -20.93700 -19.11169 -17.59085 -17.36241 -15.69633 -15.59838 -15.09291 -14.89166 -14.73356 -14.29243 -14.07569 -13.53991 -13.35324 -12.96190 -12.72336 -12.49555 -12.42907 -12.30309 -12.06323 -11.86158 -11.43782 -11.34917 -11.19303 -11.09479 -10.97582 -10.69860 -10.49344 -10.29818 -10.25247 -9.90293 -9.44023 -8.47968 -8.21725 -8.01832 -7.61584 -7.25796 -6.51345 -4.58891 1.66511 1.88470 2.70654 3.03212 3.05147 3.06651 3.13758 3.86182 4.17768 4.19680 4.66324 5.02105 5.17578 5.23601 5.30726 5.40031 5.52692 5.61052 5.70437 5.81328 5.88670 5.96190 6.00750 6.03610 6.15960 6.22365 6.24164 6.44493 6.59085 6.67585 6.74467 6.81591 6.89197 6.98205 7.03845 7.22267 7.34249 7.46661 7.54872 7.61863 7.76053 7.96679 8.13353 8.54531 8.83221 10.02709 10.19563 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.035001 B = 0.003611 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.782864 B = 7751.689224 C = 8244.823071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.126 4.126 4 C 0.026 3.974 5 C -0.274 4.274 6 C -0.035 4.035 7 C -0.274 4.274 8 C 0.254 3.746 9 C -0.418 4.418 10 H 0.086 0.914 11 C 0.066 3.934 12 N -0.705 5.705 13 Si 0.910 3.090 14 H -0.268 1.268 15 H -0.275 1.275 16 H -0.260 1.260 17 N -0.488 5.488 18 C 0.156 3.844 19 C -0.100 4.100 20 C -0.108 4.108 21 C -0.089 4.089 22 C -0.124 4.124 23 C 0.127 3.873 24 O -0.569 6.569 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.275 0.725 32 H 0.120 0.880 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.062 -10.594 -1.997 14.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.144 4.144 4 C 0.025 3.975 5 C -0.279 4.279 6 C -0.059 4.059 7 C -0.297 4.297 8 C 0.131 3.869 9 C -0.449 4.449 10 H 0.104 0.896 11 C -0.161 4.161 12 N -0.325 5.325 13 Si 0.733 3.267 14 H -0.193 1.193 15 H -0.200 1.200 16 H -0.184 1.184 17 N -0.200 5.200 18 C -0.012 4.012 19 C -0.100 4.100 20 C -0.165 4.165 21 C -0.107 4.107 22 C -0.125 4.125 23 C 0.049 3.951 24 O -0.374 6.374 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.137 0.863 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.141 0.859 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.789 -9.937 -1.221 12.685 hybrid contribution -0.861 0.134 -0.521 1.015 sum -8.650 -9.803 -1.741 13.189 Atomic orbital electron populations 1.20763 0.92029 1.02215 1.01852 1.19390 0.95162 0.92410 1.01844 1.21060 0.93661 0.96616 1.03065 1.18783 0.92027 0.92374 0.94350 1.18998 1.06810 0.95380 1.06739 1.20577 0.96731 0.92743 0.95826 1.21402 1.03789 0.98647 1.05812 1.18639 0.89230 0.91977 0.87091 1.19709 1.16245 1.00620 1.08287 0.89610 1.26153 0.96349 0.98362 0.95221 1.70127 1.22125 1.31208 1.09032 0.86273 0.78796 0.81781 0.79804 1.19343 1.19958 1.18392 1.68808 1.26786 0.99890 1.24519 1.22737 0.89572 0.94964 0.93920 1.20055 0.96045 0.92223 1.01719 1.20793 0.91419 1.02334 1.01952 1.20652 0.93176 0.97399 0.99471 1.19312 0.94099 0.92527 1.06531 1.20812 0.90156 0.84800 0.99289 1.86495 1.36447 1.16707 1.97732 0.91559 0.91689 0.92181 0.86473 0.88738 0.88289 0.91345 0.86298 0.91616 0.92762 0.90713 0.85864 0.93026 0.93016 0.77705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.59 36.01 0.35 -0.92 16 2 C -0.09 -1.34 5.87 -104.68 -0.61 -1.96 16 3 C -0.13 -2.22 9.19 -39.18 -0.36 -2.58 16 4 C 0.03 0.50 5.49 -104.88 -0.58 -0.07 16 5 C -0.27 -6.12 4.75 -104.45 -0.50 -6.62 16 6 C -0.04 -0.79 9.60 -39.38 -0.38 -1.17 16 7 C -0.27 -6.65 9.76 -39.15 -0.38 -7.03 16 8 C 0.25 6.84 6.54 -84.98 -0.56 6.29 16 9 C -0.42 -10.96 9.11 -37.84 -0.34 -11.30 16 10 H 0.09 2.09 7.86 -52.48 -0.41 1.68 16 11 C 0.07 1.64 5.49 -17.33 -0.10 1.54 16 12 N -0.70 -18.38 11.47 55.55 0.64 -17.74 16 13 Si 0.91 18.11 29.56 -169.99 -5.03 13.08 16 14 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 15 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 16 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 17 N -0.49 -13.29 7.86 -10.84 -0.09 -13.37 16 18 C 0.16 3.77 9.09 -17.13 -0.16 3.62 16 19 C -0.10 -1.84 5.88 -104.22 -0.61 -2.46 16 20 C -0.11 -1.88 8.46 36.00 0.30 -1.58 16 21 C -0.09 -1.50 9.02 -39.63 -0.36 -1.85 16 22 C -0.12 -1.90 5.89 -104.50 -0.62 -2.52 16 23 C 0.13 1.45 6.14 36.01 0.22 1.67 16 24 O -0.57 -6.40 12.12 -35.23 -0.43 -6.83 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 27 H 0.06 0.57 6.62 -51.93 -0.34 0.22 16 28 H 0.12 2.00 8.05 -52.48 -0.42 1.57 16 29 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 31 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 32 H 0.12 2.69 6.86 -52.48 -0.36 2.33 16 33 H 0.07 1.10 7.51 -51.93 -0.39 0.71 16 34 H 0.05 0.82 8.09 -51.92 -0.42 0.40 16 35 H 0.07 1.46 6.47 -51.93 -0.34 1.12 16 36 H 0.12 1.98 6.99 -52.48 -0.37 1.61 16 37 H 0.05 0.52 8.13 -51.93 -0.42 0.09 16 38 H 0.05 0.51 7.48 -51.93 -0.39 0.12 16 39 H 0.38 2.20 9.12 45.56 0.42 2.61 16 LS Contribution 326.05 15.07 4.91 4.91 Total: -1.00 -30.07 326.05 -8.93 -39.00 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.27 Total: 7.89 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -4.67 Total: -26.95 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.55 Total: -31.11 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.43 Total: -6.83 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.07 -8.93 -39.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245698879.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.714 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds