Wall clock time and date at job start Tue Mar 31 2020 05:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38047 * 119.93814 * 2 1 4 4 C 1.39305 * 119.87256 * 180.29629 * 3 2 1 5 5 C 1.48416 * 120.11829 * 179.70349 * 4 3 2 6 6 C 1.39705 * 120.41579 * 129.72167 * 5 4 3 7 7 N 1.31908 * 121.15064 * 180.02562 * 6 5 4 8 8 C 1.31528 * 122.12266 * 0.02562 * 7 6 5 9 9 C 1.40772 * 120.66253 * 359.97438 * 8 7 6 10 10 C 1.41437 * 120.60021 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00329 * 335.80017 * 10 9 8 12 12 C 1.39934 * 120.00059 * 155.80614 * 10 9 8 13 13 N 1.30833 * 119.99726 * 342.93701 * 12 10 9 14 14 Si 1.86792 * 120.00370 * 162.93884 * 12 10 9 15 15 H 1.48498 * 109.47418 * 90.00114 * 14 12 10 16 16 H 1.48508 * 109.47209 * 209.99868 * 14 12 10 17 17 H 1.48502 * 109.47049 * 329.99705 * 14 12 10 18 18 C 1.39142 * 120.40624 * 309.74324 * 5 4 3 19 19 C 1.39343 * 119.76293 * 359.42207 * 4 3 2 20 20 C 1.50706 * 120.06288 * 180.25536 * 19 4 3 21 21 C 1.37999 * 119.88132 * 0.27397 * 19 4 3 22 22 C 1.38294 * 119.94048 * 179.71570 * 2 1 3 23 23 C 1.50706 * 119.87839 * 0.02562 * 22 2 1 24 24 O 1.42898 * 109.46987 * 179.97438 * 23 22 2 25 25 H 1.09002 * 109.47255 * 270.27978 * 1 2 3 26 26 H 1.09004 * 109.46826 * 30.28256 * 1 2 3 27 27 H 1.09005 * 109.46783 * 150.27812 * 1 2 3 28 28 H 1.07993 * 120.06217 * 359.97438 * 3 2 1 29 29 H 1.07997 * 119.42097 * 359.74340 * 6 5 4 30 30 H 1.07998 * 119.66777 * 180.02562 * 8 7 6 31 31 H 0.97001 * 120.00140 * 179.97438 * 13 12 10 32 32 H 1.08007 * 120.95422 * 359.97438 * 18 5 4 33 33 H 1.09002 * 109.47103 * 89.99857 * 20 19 4 34 34 H 1.08994 * 109.47314 * 209.99930 * 20 19 4 35 35 H 1.08999 * 109.46923 * 330.00655 * 20 19 4 36 36 H 1.07998 * 119.94578 * 179.97438 * 21 19 4 37 37 H 1.08997 * 109.47221 * 299.98231 * 23 22 2 38 38 H 1.09007 * 109.46696 * 59.97647 * 23 22 2 39 39 H 0.96701 * 113.99780 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1963 0.0000 4 6 3.5890 1.1947 -0.0062 5 6 4.3352 2.4776 -0.0129 6 6 5.3605 2.7043 0.9086 7 7 6.0327 3.8392 0.9159 8 6 5.7766 4.8093 0.0654 9 6 4.7606 4.6691 -0.8988 10 6 4.4860 5.7132 -1.8124 11 1 4.7446 6.7316 -1.5624 12 6 3.8791 5.4270 -3.0404 13 7 3.8664 4.1996 -3.4934 14 14 3.0871 6.7970 -4.0328 15 1 4.0934 7.3891 -4.9503 16 1 1.9586 6.2456 -4.8252 17 1 2.5794 7.8455 -3.1118 18 6 4.0219 3.4697 -0.9368 19 6 4.2794 -0.0157 -0.0003 20 6 5.7864 -0.0253 -0.0011 21 6 3.5807 -1.2057 0.0061 22 6 2.1973 -1.1984 0.0059 23 6 1.4396 -2.5011 0.0118 24 8 2.3648 -3.5901 0.0167 25 1 -0.3634 0.0050 1.0277 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3633 -0.8925 -0.5095 28 1 1.6560 2.1315 -0.0004 29 1 5.6039 1.9387 1.6304 30 1 6.3522 5.7222 0.1067 31 1 3.4454 4.0010 -4.3444 32 1 3.2348 3.3249 -1.6621 33 1 6.1504 -0.0221 1.0263 34 1 6.1438 -0.9202 -0.5104 35 1 6.1550 0.8597 -0.5198 36 1 4.1147 -2.1444 0.0103 37 1 0.8127 -2.5528 0.9019 38 1 0.8128 -2.5608 -0.8780 39 1 1.9462 -4.4618 0.0211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245699554.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:48 Heat of formation + Delta-G solvation = -21.020582 kcal Electronic energy + Delta-G solvation = -21446.547590 eV Core-core repulsion = 18317.559117 eV Total energy + Delta-G solvation = -3128.988473 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.64723 -38.15125 -36.63965 -34.24061 -33.78237 -31.99636 -30.36915 -29.28487 -28.91653 -25.88963 -25.54458 -24.45921 -22.23165 -21.41173 -21.00567 -19.20181 -17.47282 -17.19201 -15.72401 -15.44664 -15.20857 -15.11326 -14.92254 -14.49696 -14.29245 -13.54465 -13.37656 -13.05288 -12.83281 -12.54196 -12.42501 -12.13486 -12.10483 -11.65931 -11.55772 -11.50825 -11.31732 -11.21317 -10.99565 -10.68163 -10.60233 -10.52813 -10.30760 -9.80391 -9.40283 -8.62424 -8.17652 -8.13402 -7.79459 -7.32803 -6.87629 -4.52018 1.57521 1.83095 2.62949 2.89564 3.00248 3.04193 3.16963 3.82952 4.12665 4.16589 4.55647 4.98544 5.12278 5.21099 5.29326 5.37956 5.44565 5.53369 5.62049 5.71465 5.80535 5.91898 5.96453 6.01722 6.14828 6.17839 6.38431 6.45236 6.57956 6.67945 6.72188 6.78099 6.92514 6.93725 7.04340 7.14334 7.27397 7.44229 7.55280 7.67632 7.82541 7.90331 8.38416 8.64392 8.67547 9.60050 10.03514 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.017611 B = 0.004965 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.557723 B = 5638.643317 C = 6602.787933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.107 4.107 4 C -0.005 4.005 5 C -0.091 4.091 6 C -0.019 4.019 7 N -0.471 5.471 8 C -0.019 4.019 9 C 0.062 3.938 10 C -0.451 4.451 11 H 0.083 0.917 12 C 0.075 3.925 13 N -0.789 5.789 14 Si 0.910 3.090 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.259 1.259 18 C -0.115 4.115 19 C -0.084 4.084 20 C -0.110 4.110 21 C -0.094 4.094 22 C -0.110 4.110 23 C 0.125 3.875 24 O -0.569 6.569 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.284 0.716 32 H 0.129 0.871 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.239 -10.703 2.604 13.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.125 4.125 4 C -0.005 4.005 5 C -0.094 4.094 6 C -0.177 4.177 7 N -0.178 5.178 8 C -0.180 4.180 9 C 0.058 3.942 10 C -0.481 4.481 11 H 0.101 0.899 12 C -0.144 4.144 13 N -0.413 5.413 14 Si 0.734 3.266 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.183 1.183 18 C -0.140 4.140 19 C -0.084 4.084 20 C -0.167 4.167 21 C -0.112 4.112 22 C -0.110 4.110 23 C 0.048 3.952 24 O -0.374 6.374 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.095 0.905 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.144 0.856 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.217 -10.238 3.001 12.348 hybrid contribution -1.514 0.011 -1.297 1.994 sum -7.731 -10.226 1.704 12.932 Atomic orbital electron populations 1.20772 0.91738 1.02492 1.01908 1.19411 0.95408 0.92257 1.02028 1.21025 0.93390 0.97059 1.01027 1.18862 0.92537 0.92490 0.96656 1.19426 0.98241 0.93037 0.98664 1.21772 0.98391 0.95900 1.01653 1.66950 1.26535 1.00935 1.23348 1.22523 0.99510 0.97881 0.98098 1.18455 0.90220 0.93095 0.92416 1.19540 1.34091 0.95152 0.99336 0.89864 1.25962 0.93915 0.96561 0.97950 1.69796 1.32512 1.20498 1.18538 0.86272 0.79363 0.81367 0.79596 1.19293 1.20001 1.18287 1.21771 1.00542 0.93358 0.98356 1.19967 0.96178 0.92045 1.00256 1.20834 0.91233 1.02655 1.01971 1.20664 0.93222 0.97392 0.99910 1.19358 0.94128 0.92673 1.04882 1.20837 0.90167 0.84707 0.99529 1.86488 1.36408 1.16737 1.97740 0.91473 0.91454 0.92053 0.86008 0.86196 0.85667 0.90541 0.85329 0.91487 0.92506 0.90546 0.85559 0.92809 0.92753 0.77610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.59 36.01 0.35 -0.99 16 2 C -0.09 -1.44 5.88 -104.67 -0.61 -2.05 16 3 C -0.11 -1.99 9.19 -39.25 -0.36 -2.35 16 4 C 0.00 -0.10 5.49 -104.90 -0.58 -0.67 16 5 C -0.09 -2.13 4.72 -104.82 -0.49 -2.62 16 6 C -0.02 -0.45 9.08 -16.97 -0.15 -0.60 16 7 N -0.47 -11.67 10.32 -12.28 -0.13 -11.80 16 8 C -0.02 -0.48 10.96 -16.72 -0.18 -0.67 16 9 C 0.06 1.63 5.59 -106.71 -0.60 1.04 16 10 C -0.45 -11.54 9.08 -37.73 -0.34 -11.88 16 11 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 12 C 0.07 1.81 5.18 -17.34 -0.09 1.72 16 13 N -0.79 -19.84 10.93 55.55 0.61 -19.23 16 14 Si 0.91 17.99 29.59 -169.99 -5.03 12.96 16 15 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 16 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 17 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 18 C -0.11 -2.92 8.30 -38.24 -0.32 -3.23 16 19 C -0.08 -1.58 5.87 -104.30 -0.61 -2.19 16 20 C -0.11 -1.91 8.46 36.01 0.30 -1.61 16 21 C -0.09 -1.59 9.02 -39.63 -0.36 -1.95 16 22 C -0.11 -1.71 5.88 -104.56 -0.62 -2.32 16 23 C 0.12 1.43 6.15 36.01 0.22 1.66 16 24 O -0.57 -6.36 12.13 -35.23 -0.43 -6.79 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 27 H 0.06 0.61 6.62 -51.93 -0.34 0.27 16 28 H 0.12 2.24 8.05 -52.49 -0.42 1.82 16 29 H 0.12 2.55 6.86 -52.49 -0.36 2.19 16 30 H 0.13 2.92 8.06 -52.49 -0.42 2.50 16 31 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 32 H 0.13 3.37 6.22 -52.48 -0.33 3.04 16 33 H 0.07 1.07 7.51 -51.93 -0.39 0.68 16 34 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 35 H 0.08 1.51 6.46 -51.93 -0.34 1.18 16 36 H 0.13 2.01 6.99 -52.49 -0.37 1.65 16 37 H 0.05 0.53 8.13 -51.93 -0.42 0.11 16 38 H 0.05 0.55 7.48 -51.93 -0.39 0.16 16 39 H 0.38 2.19 9.12 45.56 0.42 2.60 16 LS Contribution 324.74 15.07 4.89 4.89 Total: -1.00 -29.39 324.74 -8.70 -38.09 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -4.17 Total: 10.61 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: -4.44 Total: -28.73 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: 0.48 Total: -31.03 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.43 Total: -6.79 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.39 -8.70 -38.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245699554.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.066 kcal (2) G-P(sol) polarization free energy of solvation -29.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds