Wall clock time and date at job start Tue Mar 31 2020 05:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37936 * 119.92494 * 2 1 4 4 C 1.39665 * 119.84231 * 179.97438 * 3 2 1 5 5 C 1.47824 * 120.14608 * 179.97438 * 4 3 2 6 6 C 1.39684 * 120.65012 * 65.02569 * 5 4 3 7 7 C 1.38394 * 118.47315 * 179.97438 * 6 5 4 8 8 C 1.39054 * 119.72705 * 359.97438 * 7 6 5 9 9 N 1.31284 * 121.33873 * 0.02562 * 8 7 6 10 10 C 1.33693 * 121.63692 * 359.97438 * 9 8 7 11 11 C 1.40820 * 119.94024 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00258 * 179.97438 * 11 10 9 13 13 C 1.40151 * 119.99822 * 359.97438 * 11 10 9 14 14 N 1.30698 * 120.00230 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00195 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47222 * 59.99703 * 15 13 11 17 17 H 1.48502 * 109.47352 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47160 * 300.00267 * 15 13 11 19 19 C 1.39696 * 119.70177 * 0.26894 * 4 3 2 20 20 C 1.50704 * 120.08092 * 179.70359 * 19 4 3 21 21 C 1.37898 * 119.84534 * 359.40693 * 19 4 3 22 22 C 1.38389 * 119.92323 * 179.97438 * 2 1 3 23 23 C 1.50703 * 119.84595 * 0.02562 * 22 2 1 24 24 O 1.42893 * 109.46702 * 179.97438 * 23 22 2 25 25 H 1.09004 * 109.46836 * 90.00348 * 1 2 3 26 26 H 1.09000 * 109.47505 * 210.00384 * 1 2 3 27 27 H 1.09000 * 109.47261 * 330.00675 * 1 2 3 28 28 H 1.07997 * 120.07362 * 0.02562 * 3 2 1 29 29 H 1.07994 * 120.76167 * 359.94641 * 6 5 4 30 30 H 1.07996 * 120.13647 * 180.02562 * 7 6 5 31 31 H 1.08007 * 119.33144 * 180.27776 * 8 7 6 32 32 H 0.96997 * 120.00579 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.46833 * 90.00389 * 20 19 4 34 34 H 1.08994 * 109.47317 * 209.99993 * 20 19 4 35 35 H 1.08997 * 109.47151 * 330.00362 * 20 19 4 36 36 H 1.07996 * 119.92409 * 180.31771 * 21 19 4 37 37 H 1.08999 * 109.46903 * 299.99487 * 23 22 2 38 38 H 1.08999 * 109.46920 * 59.99571 * 23 22 2 39 39 H 0.96705 * 114.00092 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.1955 0.0000 4 6 3.5917 1.1934 0.0005 5 6 4.3360 2.4707 0.0000 6 6 4.2557 3.3421 1.0887 7 6 4.9715 4.5256 1.0408 8 6 5.7463 4.8180 -0.0763 9 7 5.8153 3.9922 -1.0946 10 6 5.1463 2.8348 -1.1054 11 6 5.2456 1.9760 -2.2170 12 1 4.7060 1.0405 -2.2266 13 6 6.0448 2.3352 -3.3108 14 7 6.6983 3.4670 -3.2990 15 14 6.1761 1.1964 -4.7857 16 1 4.8288 0.9945 -5.3767 17 1 7.0764 1.8015 -5.7998 18 1 6.7278 -0.1126 -4.3528 19 6 4.2822 -0.0210 -0.0046 20 6 5.7891 -0.0331 -0.0108 21 6 3.5816 -1.2087 0.0022 22 6 2.1973 -1.1994 0.0005 23 6 1.4385 -2.5015 0.0005 24 8 2.3628 -3.5913 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6551 2.1307 0.0004 29 1 3.6486 3.0982 1.9479 30 1 4.9292 5.2187 1.8678 31 1 6.3060 5.7413 -0.1050 32 1 7.2511 3.7159 -4.0562 33 1 6.1566 -0.0380 1.0154 34 1 6.1432 -0.9249 -0.5278 35 1 6.1575 0.8549 -0.5244 36 1 4.1141 -2.1483 0.0034 37 1 0.8114 -2.5565 0.8903 38 1 0.8119 -2.5568 -0.8896 39 1 1.9435 -4.4627 0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245701410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:50 Heat of formation + Delta-G solvation = -6.126835 kcal Electronic energy + Delta-G solvation = -21957.475970 eV Core-core repulsion = 18829.133338 eV Total energy + Delta-G solvation = -3128.342632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.44199 -37.98631 -36.46025 -33.89362 -33.51236 -31.73581 -30.30705 -29.26732 -28.67531 -26.07909 -25.42025 -24.10296 -22.01488 -21.24328 -20.92441 -18.89475 -17.49275 -17.29346 -15.73779 -15.33640 -14.97113 -14.79712 -14.61362 -14.31380 -14.10804 -13.40192 -13.20512 -12.81903 -12.61447 -12.44384 -12.35712 -12.12086 -11.91553 -11.73175 -11.22869 -11.17848 -11.11542 -11.07190 -10.88233 -10.46813 -10.33992 -10.25770 -10.16852 -9.79225 -9.37639 -8.32682 -8.02397 -7.84286 -7.58095 -7.23213 -6.46143 -4.55342 1.88542 2.07193 2.72295 2.98258 3.05983 3.09934 3.21273 3.91564 4.30230 4.34318 4.70179 5.14403 5.32217 5.35415 5.43109 5.51996 5.68067 5.80031 5.83083 5.84854 6.02956 6.06745 6.10011 6.24548 6.29079 6.41448 6.46965 6.53382 6.70697 6.76456 6.85353 6.97864 7.09541 7.12261 7.18961 7.32386 7.45785 7.57000 7.65431 7.72442 7.79952 8.01449 8.22461 8.58925 8.88450 10.05116 10.23648 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.006769 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.130255 B = 4135.632922 C = 5291.557496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.095 4.095 3 C -0.119 4.119 4 C 0.029 3.971 5 C -0.231 4.231 6 C -0.036 4.036 7 C -0.321 4.321 8 C 0.129 3.871 9 N -0.483 5.483 10 C 0.270 3.730 11 C -0.415 4.415 12 H 0.089 0.911 13 C 0.069 3.931 14 N -0.709 5.709 15 Si 0.901 3.099 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.261 1.261 19 C -0.076 4.076 20 C -0.123 4.123 21 C -0.097 4.097 22 C -0.119 4.119 23 C 0.127 3.873 24 O -0.568 6.568 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.275 0.725 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.755 -8.413 3.722 12.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.095 4.095 3 C -0.138 4.138 4 C 0.028 3.972 5 C -0.236 4.236 6 C -0.060 4.060 7 C -0.344 4.344 8 C -0.039 4.039 9 N -0.194 5.194 10 C 0.146 3.854 11 C -0.445 4.445 12 H 0.107 0.893 13 C -0.157 4.157 14 N -0.329 5.329 15 Si 0.725 3.275 16 H -0.188 1.188 17 H -0.201 1.201 18 H -0.186 1.186 19 C -0.076 4.076 20 C -0.179 4.179 21 C -0.115 4.115 22 C -0.119 4.119 23 C 0.050 3.950 24 O -0.373 6.373 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.135 0.865 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.140 0.860 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.652 -7.602 2.821 10.488 hybrid contribution -0.953 -1.005 0.147 1.393 sum -7.605 -8.607 2.969 11.863 Atomic orbital electron populations 1.20740 0.92142 1.02003 1.01781 1.19337 0.95048 0.92406 1.02692 1.21060 0.93641 0.96518 1.02532 1.18609 0.91766 0.92383 0.94407 1.19321 1.09076 0.96295 0.98901 1.20842 0.96217 0.93204 0.95754 1.21194 1.10606 1.00644 1.01950 1.22578 0.94174 0.97417 0.89690 1.68767 1.22647 1.03582 1.24441 1.18475 0.86952 0.89420 0.90536 1.19634 1.22497 1.03997 0.98356 0.89254 1.26119 0.94531 0.95302 0.99787 1.70103 1.16460 1.18098 1.28270 0.86464 0.79393 0.81146 0.80507 1.18788 1.20114 1.18585 1.20088 0.96286 0.91933 0.99277 1.21027 0.91351 1.04390 1.01147 1.20677 0.93132 0.97513 1.00194 1.19314 0.94109 0.92432 1.06051 1.20816 0.90164 0.84870 0.99200 1.86511 1.36405 1.16630 1.97727 0.91641 0.92308 0.91827 0.86653 0.88748 0.88812 0.86483 0.91405 0.92870 0.92944 0.87968 0.85956 0.93104 0.93037 0.77846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.59 36.00 0.35 -1.04 16 2 C -0.09 -1.59 5.87 -104.68 -0.61 -2.21 16 3 C -0.12 -2.32 9.40 -39.16 -0.37 -2.69 16 4 C 0.03 0.63 4.47 -104.90 -0.47 0.16 16 5 C -0.23 -5.54 4.68 -104.07 -0.49 -6.03 16 6 C -0.04 -0.81 9.88 -38.98 -0.39 -1.19 16 7 C -0.32 -7.14 10.10 -39.22 -0.40 -7.53 16 8 C 0.13 3.09 11.17 -17.48 -0.20 2.90 16 9 N -0.48 -13.05 7.85 -10.91 -0.09 -13.14 16 10 C 0.27 7.14 5.54 -84.71 -0.47 6.67 16 11 C -0.41 -10.80 6.77 -37.89 -0.26 -11.06 16 12 H 0.09 2.29 5.88 -52.49 -0.31 1.98 16 13 C 0.07 1.73 5.50 -17.32 -0.10 1.64 16 14 N -0.71 -18.48 11.46 55.56 0.64 -17.84 16 15 Si 0.90 18.72 29.56 -169.99 -5.02 13.69 16 16 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 17 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 19 C -0.08 -1.57 4.87 -104.20 -0.51 -2.08 16 20 C -0.12 -2.51 9.16 36.01 0.33 -2.18 16 21 C -0.10 -1.83 9.02 -39.63 -0.36 -2.19 16 22 C -0.12 -2.01 5.89 -104.49 -0.62 -2.63 16 23 C 0.13 1.62 6.14 36.01 0.22 1.85 16 24 O -0.57 -7.16 12.12 -35.23 -0.43 -7.59 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.62 6.62 -51.93 -0.34 0.28 16 27 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 28 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 29 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 30 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 31 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 32 H 0.27 6.52 8.29 -40.82 -0.34 6.18 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 35 H 0.10 2.40 4.31 -51.93 -0.22 2.17 16 36 H 0.12 2.21 6.99 -52.49 -0.37 1.85 16 37 H 0.05 0.56 7.48 -51.93 -0.39 0.17 16 38 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 39 H 0.38 2.65 9.12 45.56 0.42 3.07 16 LS Contribution 321.88 15.07 4.85 4.85 Total: -1.00 -29.95 321.88 -8.52 -38.47 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -4.15 Total: 9.18 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -4.32 Total: -27.62 kcal Atomic # 7 Polarization: -31.53 SS G_CDS: 0.55 Total: -30.98 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.43 Total: -7.59 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.95 -8.52 -38.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245701410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.340 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds