Wall clock time and date at job start Tue Mar 31 2020 05:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38045 * 119.93821 * 2 1 4 4 C 1.39321 * 119.87497 * 180.31856 * 3 2 1 5 5 C 1.48382 * 120.12467 * 179.69595 * 4 3 2 6 6 C 1.40031 * 120.82586 * 129.72080 * 5 4 3 7 7 C 1.38512 * 119.42732 * 180.02562 * 6 5 4 8 8 N 1.31479 * 121.14129 * 0.02562 * 7 6 5 9 9 C 1.33643 * 121.79581 * 359.97438 * 8 7 6 10 10 C 1.41421 * 119.77653 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99993 * 188.93971 * 10 9 8 12 12 C 1.40037 * 120.00177 * 8.93790 * 10 9 8 13 13 N 1.30734 * 119.99843 * 195.79551 * 12 10 9 14 14 Si 1.86802 * 119.99738 * 15.79997 * 12 10 9 15 15 H 1.48497 * 109.46811 * 269.99625 * 14 12 10 16 16 H 1.48501 * 109.47379 * 29.99772 * 14 12 10 17 17 H 1.48501 * 109.47040 * 150.00080 * 14 12 10 18 18 C 1.39309 * 120.81903 * 309.98290 * 5 4 3 19 19 C 1.39365 * 119.75677 * 359.42505 * 4 3 2 20 20 C 1.50699 * 120.06224 * 180.25538 * 19 4 3 21 21 C 1.37996 * 119.88042 * 0.27034 * 19 4 3 22 22 C 1.38301 * 119.93999 * 179.71644 * 2 1 3 23 23 C 1.50700 * 119.87450 * 359.97438 * 22 2 1 24 24 O 1.42904 * 109.46705 * 179.97438 * 23 22 2 25 25 H 1.09000 * 109.47719 * 270.28562 * 1 2 3 26 26 H 1.09004 * 109.47021 * 30.28556 * 1 2 3 27 27 H 1.08996 * 109.47178 * 150.27935 * 1 2 3 28 28 H 1.07997 * 120.06299 * 0.03527 * 3 2 1 29 29 H 1.08010 * 120.28806 * 359.97438 * 6 5 4 30 30 H 1.07999 * 119.42419 * 179.97438 * 7 6 5 31 31 H 0.96995 * 120.00461 * 354.80134 * 13 12 10 32 32 H 1.08007 * 120.58471 * 0.02562 * 18 5 4 33 33 H 1.09009 * 109.47229 * 89.99870 * 20 19 4 34 34 H 1.09000 * 109.47076 * 209.99427 * 20 19 4 35 35 H 1.08997 * 109.46971 * 329.99993 * 20 19 4 36 36 H 1.07994 * 119.94203 * 179.97438 * 21 19 4 37 37 H 1.08998 * 109.47189 * 299.97587 * 23 22 2 38 38 H 1.08993 * 109.47361 * 59.97962 * 23 22 2 39 39 H 0.96705 * 113.99549 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1963 0.0000 4 6 3.5891 1.1947 -0.0067 5 6 4.3352 2.4773 -0.0136 6 6 5.3647 2.7135 0.9058 7 6 6.0418 3.9214 0.8738 8 7 5.7342 4.8502 -0.0045 9 6 4.7606 4.6750 -0.9030 10 6 4.4652 5.7031 -1.8280 11 1 3.5911 5.6281 -2.4579 12 6 5.3060 6.8186 -1.9273 13 7 4.8908 7.8978 -2.5373 14 14 7.0207 6.7644 -1.1881 15 1 6.9688 7.2393 0.2179 16 1 7.5301 5.3698 -1.2211 17 1 7.9262 7.6409 -1.9736 18 6 4.0251 3.4785 -0.9313 19 6 4.2795 -0.0159 -0.0013 20 6 5.7865 -0.0255 -0.0027 21 6 3.5807 -1.2058 0.0051 22 6 2.1972 -1.1984 0.0059 23 6 1.4395 -2.5011 0.0130 24 8 2.3647 -3.5902 0.0176 25 1 -0.3634 0.0051 1.0276 26 1 -0.3633 0.8874 -0.5183 27 1 -0.3633 -0.8924 -0.5095 28 1 1.6559 2.1315 0.0006 29 1 5.6280 1.9606 1.6341 30 1 6.8355 4.1037 1.5832 31 1 4.0311 7.9009 -2.9863 32 1 3.2347 3.3363 -1.6535 33 1 6.1508 -0.0227 1.0247 34 1 6.1436 -0.9205 -0.5122 35 1 6.1550 0.8595 -0.5213 36 1 4.1147 -2.1445 0.0089 37 1 0.8133 -2.5524 0.9037 38 1 0.8121 -2.5612 -0.8762 39 1 1.9460 -4.4619 0.0219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245703116.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:33 Heat of formation + Delta-G solvation = -27.088857 kcal Electronic energy + Delta-G solvation = -21260.886760 eV Core-core repulsion = 18131.635147 eV Total energy + Delta-G solvation = -3129.251613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.85887 -38.42091 -36.82162 -34.39110 -33.61000 -32.28802 -30.44415 -29.85660 -29.10225 -26.15640 -25.48944 -24.68955 -22.48003 -21.36883 -21.11450 -19.50392 -18.06499 -17.57804 -15.92752 -15.41326 -15.30063 -15.23757 -14.78272 -14.63482 -14.03152 -13.75554 -13.57051 -13.16445 -13.03375 -12.75903 -12.58007 -12.41712 -12.40921 -12.13100 -11.89461 -11.70573 -11.42413 -10.92978 -10.78319 -10.68897 -10.61303 -10.35748 -9.95585 -9.74876 -9.15944 -8.89397 -8.34576 -8.00740 -7.87301 -7.73625 -7.27050 -4.77587 1.34129 1.61716 2.54933 2.61668 3.55846 3.63787 3.91667 3.95892 4.02019 4.39266 4.57571 4.81469 4.93698 5.03990 5.12715 5.21879 5.23095 5.34415 5.50741 5.56950 5.60341 5.72926 5.73472 5.79934 5.92396 5.97428 6.17492 6.26352 6.29083 6.42468 6.47700 6.52933 6.65826 6.72814 6.86976 7.03478 7.13840 7.30827 7.40087 7.42089 7.46884 7.67452 8.06925 8.28728 8.62891 9.50461 9.97485 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.028443 B = 0.004139 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.175697 B = 6763.214015 C = 7406.771288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.104 4.104 4 C -0.022 4.022 5 C 0.015 3.985 6 C -0.298 4.298 7 C 0.146 3.854 8 N -0.570 5.570 9 C 0.251 3.749 10 C -0.479 4.479 11 H 0.081 0.919 12 C 0.049 3.951 13 N -0.802 5.802 14 Si 1.144 2.856 15 H -0.284 1.284 16 H -0.280 1.280 17 H -0.327 1.327 18 C -0.242 4.242 19 C -0.080 4.080 20 C -0.111 4.111 21 C -0.095 4.095 22 C -0.104 4.104 23 C 0.123 3.877 24 O -0.569 6.569 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.124 0.876 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.284 0.716 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.129 0.871 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 -17.706 4.678 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.122 4.122 4 C -0.022 4.022 5 C 0.009 3.991 6 C -0.321 4.321 7 C -0.015 4.015 8 N -0.289 5.289 9 C 0.128 3.872 10 C -0.510 4.510 11 H 0.099 0.901 12 C -0.173 4.173 13 N -0.423 5.423 14 Si 0.977 3.023 15 H -0.211 1.211 16 H -0.207 1.207 17 H -0.260 1.260 18 C -0.264 4.264 19 C -0.080 4.080 20 C -0.168 4.168 21 C -0.113 4.113 22 C -0.105 4.105 23 C 0.046 3.954 24 O -0.374 6.374 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.142 0.858 29 H 0.123 0.877 30 H 0.145 0.855 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.147 0.853 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.922 -15.458 4.831 16.663 hybrid contribution -2.639 -2.130 -0.321 3.407 sum -6.561 -17.588 4.510 19.306 Atomic orbital electron populations 1.20783 0.91503 1.02624 1.02108 1.19441 0.95586 0.92180 1.01933 1.21046 0.93235 0.97259 1.00667 1.18921 0.92693 0.92482 0.98112 1.18631 0.94208 0.91189 0.95078 1.21197 1.04401 1.00403 1.06085 1.22056 0.95977 0.89276 0.94222 1.66756 1.20767 1.32531 1.08820 1.18497 0.87337 0.91028 0.90297 1.20721 1.09968 1.03136 1.17209 0.90106 1.27725 1.06734 0.89815 0.93012 1.70618 1.22007 1.26883 1.22833 0.82110 0.70432 0.74982 0.74794 1.21146 1.20693 1.25999 1.21711 1.06007 0.95158 1.03573 1.19983 0.96302 0.91940 0.99751 1.20853 0.91041 1.02711 1.02190 1.20704 0.93253 0.97483 0.99868 1.19426 0.94149 0.92823 1.04058 1.20849 0.90184 0.84634 0.99722 1.86480 1.36393 1.16805 1.97745 0.91315 0.91363 0.91908 0.85795 0.87695 0.85471 0.90497 0.87753 0.91315 0.92389 0.90467 0.85337 0.92629 0.92587 0.77432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.59 36.00 0.35 -0.84 16 2 C -0.09 -1.29 5.88 -104.67 -0.61 -1.91 16 3 C -0.10 -1.74 9.20 -39.25 -0.36 -2.11 16 4 C -0.02 -0.41 5.51 -104.90 -0.58 -0.99 16 5 C 0.01 0.31 4.73 -104.65 -0.49 -0.18 16 6 C -0.30 -6.11 8.04 -38.81 -0.31 -6.43 16 7 C 0.15 3.20 11.17 -17.60 -0.20 3.01 16 8 N -0.57 -14.51 5.02 -11.20 -0.06 -14.57 16 9 C 0.25 6.59 6.27 -85.02 -0.53 6.05 16 10 C -0.48 -13.12 9.51 -37.70 -0.36 -13.48 16 11 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 12 C 0.05 1.34 5.51 -17.34 -0.10 1.24 16 13 N -0.80 -21.91 13.65 55.55 0.76 -21.15 16 14 Si 1.14 28.06 25.94 -169.99 -4.41 23.65 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.28 -6.88 6.54 56.52 0.37 -6.51 16 17 H -0.33 -7.85 7.11 56.52 0.40 -7.45 16 18 C -0.24 -5.74 9.37 -38.34 -0.36 -6.10 16 19 C -0.08 -1.33 5.88 -104.29 -0.61 -1.95 16 20 C -0.11 -1.69 8.48 36.01 0.31 -1.39 16 21 C -0.10 -1.45 9.02 -39.63 -0.36 -1.81 16 22 C -0.10 -1.45 5.88 -104.56 -0.62 -2.07 16 23 C 0.12 1.25 6.15 36.01 0.22 1.47 16 24 O -0.57 -5.64 12.13 -35.23 -0.43 -6.07 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 27 H 0.06 0.54 6.62 -51.93 -0.34 0.19 16 28 H 0.12 2.05 8.05 -52.49 -0.42 1.63 16 29 H 0.10 1.91 6.94 -52.48 -0.36 1.54 16 30 H 0.13 2.37 8.06 -52.49 -0.42 1.94 16 31 H 0.28 7.41 8.73 -40.82 -0.36 7.06 16 32 H 0.10 2.39 8.06 -52.48 -0.42 1.96 16 33 H 0.07 0.96 7.54 -51.92 -0.39 0.57 16 34 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 35 H 0.08 1.33 6.46 -51.93 -0.34 0.99 16 36 H 0.13 1.84 6.99 -52.49 -0.37 1.47 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.49 7.48 -51.93 -0.39 0.10 16 39 H 0.38 1.76 9.12 45.56 0.42 2.18 16 LS Contribution 322.21 15.07 4.86 4.86 Total: -1.00 -30.68 322.21 -8.23 -38.91 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.33 Total: 1.84 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -4.62 Total: -27.46 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.70 Total: -35.72 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.43 Total: -6.07 kcal Atomic # 14 Polarization: 28.06 SS G_CDS: -4.41 Total: 23.65 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.68 -8.23 -38.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245703116.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.819 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds