Wall clock time and date at job start Tue Mar 31 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46672 * 2 1 4 4 C 1.37782 * 119.95600 * 265.00016 * 3 2 1 5 5 C 1.39689 * 119.90903 * 179.97438 * 4 3 2 6 6 C 1.47845 * 120.08685 * 180.02562 * 5 4 3 7 7 C 1.39966 * 119.45857 * 184.70316 * 6 5 4 8 8 C 1.36557 * 119.46438 * 179.76864 * 7 6 5 9 9 C 1.41331 * 118.42010 * 0.49734 * 8 7 6 10 10 C 1.41032 * 120.54758 * 179.77167 * 9 8 7 11 11 H 1.08000 * 119.99582 * 330.30449 * 10 9 8 12 12 C 1.39992 * 119.99944 * 150.31185 * 10 9 8 13 13 N 1.30805 * 120.00121 * 161.80092 * 12 10 9 14 14 Si 1.86802 * 119.99921 * 341.79155 * 12 10 9 15 15 H 1.48509 * 109.46747 * 95.41317 * 14 12 10 16 16 H 1.48491 * 109.47201 * 215.41171 * 14 12 10 17 17 H 1.48498 * 109.47156 * 335.41671 * 14 12 10 18 18 C 1.40953 * 118.90124 * 359.74590 * 9 8 7 19 19 N 1.31254 * 120.40944 * 0.02562 * 18 9 8 20 20 C 1.39733 * 119.82973 * 359.97438 * 5 4 3 21 21 C 1.37732 * 119.90715 * 359.97438 * 20 5 4 22 22 C 1.38949 * 119.96050 * 85.23597 * 3 2 1 23 23 O 1.35791 * 119.90874 * 0.02562 * 22 3 2 24 24 C 1.42901 * 117.00289 * 180.25674 * 23 22 3 25 25 H 1.09003 * 109.46499 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47125 * 299.99811 * 1 2 3 27 27 H 1.08993 * 109.47286 * 60.00485 * 1 2 3 28 28 H 1.09000 * 109.47125 * 240.00189 * 2 1 3 29 29 H 1.08993 * 109.47286 * 119.99515 * 2 1 3 30 30 H 1.08000 * 120.04041 * 359.97438 * 4 3 2 31 31 H 1.07999 * 120.26589 * 0.02562 * 7 6 5 32 32 H 1.08004 * 120.78962 * 180.25015 * 8 7 6 33 33 H 0.97001 * 120.00211 * 179.97438 * 13 12 10 34 34 H 1.08001 * 119.79526 * 179.97438 * 18 9 8 35 35 H 1.08003 * 120.04633 * 179.97438 * 20 5 4 36 36 H 1.08005 * 119.95559 * 179.97438 * 21 20 5 37 37 H 1.09000 * 109.46948 * 300.00120 * 24 23 22 38 38 H 1.09003 * 109.46941 * 59.99885 * 24 23 22 39 39 H 1.08999 * 109.47296 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3596 2.0348 -1.1892 5 6 2.8246 3.3521 -1.1881 6 6 3.1764 4.0149 -2.4619 7 6 3.7338 5.2986 -2.4389 8 6 4.0633 5.9090 -3.6152 9 6 3.8166 5.2186 -4.8235 10 6 4.1349 5.8088 -6.0642 11 1 4.1061 6.8828 -6.1744 12 6 4.4882 5.0026 -7.1527 13 7 4.4371 5.4847 -8.3676 14 14 5.0329 3.2382 -6.8702 15 1 3.8712 2.3285 -7.0389 16 1 6.0872 2.8822 -7.8535 17 1 5.5731 3.1012 -5.4938 18 6 3.2476 3.9302 -4.7679 19 7 2.9524 3.3836 -3.6117 20 6 2.9552 4.0421 0.0199 21 6 2.6248 3.4216 1.2044 22 6 2.1692 2.1084 1.1997 23 8 1.8506 1.4981 2.3701 24 6 2.0097 2.2643 3.5657 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 2.2569 1.4983 -2.1209 31 1 3.9058 5.8005 -1.4983 32 1 4.4983 6.8975 -3.6222 33 1 4.6822 4.9262 -9.1218 34 1 3.0525 3.3898 -5.6825 35 1 3.3147 5.0605 0.0249 36 1 2.7259 3.9540 2.1386 37 1 3.0519 2.5669 3.6674 38 1 1.3773 3.1508 3.5160 39 1 1.7208 1.6601 4.4257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245789117.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:05 Heat of formation + Delta-G solvation = -17.471779 kcal Electronic energy + Delta-G solvation = -21082.558856 eV Core-core repulsion = 17953.724271 eV Total energy + Delta-G solvation = -3128.834585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.27805 -40.38602 -38.26554 -35.99242 -35.10626 -33.41095 -32.65996 -30.90005 -30.17529 -28.29590 -26.74973 -25.09572 -24.04312 -23.61577 -22.26627 -21.36535 -19.68346 -18.83331 -17.97620 -17.36550 -17.02082 -16.57576 -16.27949 -15.74023 -15.57174 -15.02183 -14.93949 -14.74952 -14.64668 -14.37967 -14.13244 -13.89256 -13.68000 -13.25462 -12.97503 -12.84961 -12.75366 -12.62663 -12.55007 -12.29620 -11.94642 -11.90701 -11.72562 -11.47509 -11.29052 -10.48925 -10.07493 -9.95483 -9.69795 -9.06673 -8.68315 -6.57542 -0.02401 0.46283 0.74028 0.94317 1.23811 1.36262 1.41855 2.02289 2.45585 2.46482 2.92157 3.54339 3.62929 3.79342 3.91024 4.12434 4.20876 4.33639 4.38275 4.42929 4.46973 4.54994 4.55494 4.56369 4.72392 4.76671 4.79384 4.86966 4.97996 5.01358 5.08444 5.17721 5.21927 5.34084 5.41420 5.43349 5.54814 5.66541 5.85636 5.89750 5.98245 6.10803 6.45570 6.54414 6.59333 7.49803 7.99430 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027586 B = 0.003985 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.755713 B = 7023.968755 C = 7739.786697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.072 4.072 3 C -0.122 4.122 4 C -0.080 4.080 5 C -0.057 4.057 6 C 0.013 3.987 7 C -0.109 4.109 8 C -0.184 4.184 9 C 0.028 3.972 10 C -0.455 4.455 11 H 0.074 0.926 12 C 0.057 3.943 13 N -0.822 5.822 14 Si 0.958 3.042 15 H -0.258 1.258 16 H -0.265 1.265 17 H -0.267 1.267 18 C -0.045 4.045 19 N -0.460 5.460 20 C -0.089 4.089 21 C -0.196 4.196 22 C 0.112 3.888 23 O -0.325 6.325 24 C 0.017 3.983 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.149 0.851 32 H 0.129 0.871 33 H 0.301 0.699 34 H 0.128 0.872 35 H 0.143 0.857 36 H 0.158 0.842 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.178 -6.954 19.307 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 C -0.123 4.123 4 C -0.099 4.099 5 C -0.058 4.058 6 C -0.123 4.123 7 C -0.128 4.128 8 C -0.209 4.209 9 C 0.024 3.976 10 C -0.483 4.483 11 H 0.092 0.908 12 C -0.161 4.161 13 N -0.446 5.446 14 Si 0.781 3.219 15 H -0.183 1.183 16 H -0.190 1.190 17 H -0.192 1.192 18 C -0.207 4.207 19 N -0.168 5.168 20 C -0.108 4.108 21 C -0.215 4.215 22 C 0.066 3.934 23 O -0.239 6.239 24 C -0.077 4.077 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.136 0.864 31 H 0.166 0.834 32 H 0.147 0.853 33 H 0.112 0.888 34 H 0.145 0.855 35 H 0.160 0.840 36 H 0.175 0.825 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.582 -7.922 19.041 20.932 hybrid contribution 0.724 0.848 -0.777 1.359 sum -2.858 -7.074 18.265 19.794 Atomic orbital electron populations 1.21658 0.94247 1.02247 1.01350 1.20353 0.96654 0.91158 1.02733 1.19345 1.04712 0.98128 0.90129 1.20975 0.97572 0.94218 0.97112 1.18596 1.01784 0.94213 0.91210 1.19512 1.08067 0.93841 0.90865 1.21662 0.97478 0.94763 0.98926 1.21380 1.05926 1.01883 0.91701 1.18823 0.91050 0.93326 0.94435 1.19460 1.39941 0.95936 0.92993 0.90801 1.26722 0.92048 1.03639 0.93733 1.69661 1.33704 1.40868 1.00348 0.85609 0.79345 0.77767 0.79138 1.18319 1.19029 1.19191 1.22444 1.07256 0.96436 0.94521 1.66997 1.14846 1.36415 0.98504 1.21167 0.98854 1.00358 0.90454 1.21324 1.06091 0.94419 0.99639 1.18961 0.96887 0.91652 0.85870 1.86002 1.82308 1.42197 1.13400 1.23336 1.02251 0.97642 0.84495 0.90869 0.92818 0.93848 0.91343 0.90279 0.86388 0.83352 0.85308 0.88788 0.85533 0.83957 0.82474 0.91866 0.91890 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.89 71.98 0.71 -2.37 16 2 C -0.07 -1.79 5.78 29.85 0.17 -1.61 16 3 C -0.12 -3.67 5.14 -19.80 -0.10 -3.77 16 4 C -0.08 -2.85 9.19 22.51 0.21 -2.64 16 5 C -0.06 -2.11 5.88 -20.02 -0.12 -2.23 16 6 C 0.01 0.58 6.73 41.92 0.28 0.86 16 7 C -0.11 -4.38 9.37 22.30 0.21 -4.17 16 8 C -0.18 -8.21 9.87 22.64 0.22 -7.98 16 9 C 0.03 1.44 5.12 -21.17 -0.11 1.33 16 10 C -0.45 -24.37 9.58 23.38 0.22 -24.15 16 11 H 0.07 4.14 8.06 -2.91 -0.02 4.12 16 12 C 0.06 2.94 5.41 85.27 0.46 3.40 16 13 N -0.82 -42.52 13.93 21.83 0.30 -42.22 16 14 Si 0.96 42.46 24.52 68.60 1.68 44.14 16 15 H -0.26 -11.10 6.71 99.48 0.67 -10.43 16 16 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 17 H -0.27 -12.70 6.86 99.48 0.68 -12.02 16 18 C -0.04 -2.26 8.36 85.44 0.71 -1.55 16 19 N -0.46 -22.40 9.39 -182.74 -1.72 -24.12 16 20 C -0.09 -2.62 9.40 22.51 0.21 -2.41 16 21 C -0.20 -4.86 9.02 22.33 0.20 -4.66 16 22 C 0.11 3.00 6.67 22.62 0.15 3.15 16 23 O -0.33 -7.27 9.61 -91.21 -0.88 -8.14 16 24 C 0.02 0.22 9.81 113.37 1.11 1.34 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.68 8.05 -2.39 -0.02 1.66 16 29 H 0.08 1.82 7.67 -2.39 -0.02 1.80 16 30 H 0.12 4.51 7.53 -2.91 -0.02 4.49 16 31 H 0.15 4.64 6.17 -2.91 -0.02 4.62 16 32 H 0.13 5.19 8.06 -2.91 -0.02 5.17 16 33 H 0.30 13.88 8.30 -92.71 -0.77 13.11 16 34 H 0.13 6.38 4.72 -2.91 -0.01 6.36 16 35 H 0.14 3.54 6.17 -2.91 -0.02 3.52 16 36 H 0.16 2.73 6.28 -2.91 -0.02 2.71 16 37 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 38 H 0.06 0.72 7.65 -2.39 -0.02 0.70 16 39 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -61.75 322.23 4.95 -56.80 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 1.00 Total: 21.01 kcal Atomic # 6 Polarization: -52.02 SS G_CDS: 4.55 Total: -47.47 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -1.41 Total: -66.34 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.88 Total: -8.14 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.68 Total: 44.14 kcal Total: -61.75 4.95 -56.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245789117.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.330 kcal (2) G-P(sol) polarization free energy of solvation -61.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds