Wall clock time and date at job start Tue Mar 31 2020 06:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.47122 * 2 1 4 4 C 1.37932 * 119.96717 * 265.00062 * 3 2 1 5 5 C 1.39344 * 119.93062 * 180.24908 * 4 3 2 6 6 C 1.48390 * 120.05909 * 179.72158 * 5 4 3 7 7 C 1.39725 * 120.41212 * 359.72798 * 6 5 4 8 8 N 1.31914 * 121.14352 * 179.69602 * 7 6 5 9 9 C 1.31518 * 122.12348 * 0.58921 * 8 7 6 10 10 C 1.40779 * 120.66735 * 359.70298 * 9 8 7 11 11 C 1.41442 * 120.60107 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00168 * 335.74651 * 11 10 9 13 13 C 1.39932 * 119.99578 * 155.73745 * 11 10 9 14 14 N 1.30832 * 120.00141 * 343.65026 * 13 11 10 15 15 Si 1.86802 * 119.99753 * 163.65334 * 13 11 10 16 16 H 1.48497 * 109.47504 * 59.99836 * 15 13 11 17 17 H 1.48503 * 109.46955 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46939 * 299.99697 * 15 13 11 19 19 C 1.39154 * 120.40885 * 180.02562 * 6 5 4 20 20 C 1.39385 * 119.87532 * 359.47599 * 5 4 3 21 21 C 1.37886 * 119.93537 * 0.54442 * 20 5 4 22 22 C 1.38812 * 119.96747 * 85.01660 * 3 2 1 23 23 O 1.35872 * 119.93397 * 0.02562 * 22 3 2 24 24 C 1.42906 * 116.99673 * 179.97438 * 23 22 3 25 25 H 1.09001 * 109.46967 * 60.00428 * 1 2 3 26 26 H 1.09002 * 109.46638 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47368 * 300.00013 * 1 2 3 28 28 H 1.09000 * 109.48031 * 240.00134 * 2 1 3 29 29 H 1.09003 * 109.47704 * 119.99561 * 2 1 3 30 30 H 1.07998 * 120.02817 * 359.97106 * 4 3 2 31 31 H 1.07999 * 119.42869 * 359.97333 * 7 6 5 32 32 H 1.07999 * 119.66579 * 179.67950 * 9 8 7 33 33 H 0.97001 * 119.99653 * 180.02562 * 14 13 11 34 34 H 1.07995 * 120.95738 * 0.02562 * 19 6 5 35 35 H 1.08006 * 120.03194 * 180.27396 * 20 5 4 36 36 H 1.08002 * 119.96686 * 179.70767 * 21 20 5 37 37 H 1.08993 * 109.46936 * 60.00351 * 24 23 22 38 38 H 1.08999 * 109.46926 * 180.02562 * 24 23 22 39 39 H 1.08996 * 109.47070 * 299.99983 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3601 2.0357 -1.1904 5 6 2.8295 3.3478 -1.1890 6 6 3.1889 4.0099 -2.4675 7 6 3.0655 3.3239 -3.6784 8 7 3.3752 3.9005 -4.8238 9 6 3.8231 5.1354 -4.8865 10 6 3.9849 5.9008 -3.7160 11 6 4.4672 7.2287 -3.7850 12 1 5.0696 7.5415 -4.6250 13 6 4.1636 8.1371 -2.7649 14 7 3.1938 7.8784 -1.9258 15 14 5.1431 9.7193 -2.6013 16 1 5.0051 10.5179 -3.8456 17 1 4.6285 10.5032 -1.4498 18 1 6.5748 9.3943 -2.3779 19 6 3.6588 5.3197 -2.4745 20 6 2.9559 4.0387 0.0149 21 6 2.6270 3.4188 1.2018 22 6 2.1650 2.1094 1.1980 23 8 1.8420 1.5009 2.3691 24 6 2.0031 2.2674 3.5644 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8935 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.2574 1.4992 -2.1220 31 1 2.7061 2.3054 -3.6772 32 1 4.0695 5.5666 -5.8455 33 1 2.9831 8.5083 -1.2189 34 1 3.7702 5.8749 -1.5549 35 1 3.3152 5.0572 0.0184 36 1 2.7292 3.9521 2.1354 37 1 1.3746 3.1564 3.5133 38 1 1.7113 1.6647 4.4245 39 1 3.0464 2.5654 3.6671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245790302.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:14 Heat of formation + Delta-G solvation = -5.267148 kcal Electronic energy + Delta-G solvation = -21276.109277 eV Core-core repulsion = 18147.803924 eV Total energy + Delta-G solvation = -3128.305353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.06325 -38.48037 -37.02110 -34.15867 -34.07608 -31.55497 -30.47124 -29.40768 -28.30945 -26.76258 -25.70240 -23.79644 -22.48067 -22.03458 -20.76863 -19.68500 -17.79981 -17.34700 -16.10114 -15.77575 -15.64970 -15.29100 -14.96156 -14.33907 -14.00489 -13.86484 -13.59472 -13.07127 -13.05651 -12.82860 -12.46760 -12.29191 -11.84295 -11.75643 -11.63917 -11.47913 -11.30910 -11.28161 -11.05425 -10.93753 -10.74119 -10.65785 -10.28649 -9.84888 -9.42204 -8.78542 -8.44275 -8.13619 -7.85857 -7.05337 -6.85080 -4.55066 1.48951 1.71047 2.67466 2.96581 2.98516 3.01035 3.15936 3.42627 3.80972 4.18841 4.60581 4.94125 5.00601 5.09385 5.14831 5.29328 5.41988 5.47657 5.55158 5.56497 5.63795 5.74185 5.80623 5.91571 6.00391 6.09881 6.11000 6.31625 6.39246 6.48487 6.61907 6.71797 6.78000 6.79220 7.00515 7.09617 7.14955 7.24328 7.62288 7.66269 7.80067 7.88472 8.36443 8.61937 8.65202 9.57793 10.01222 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.004641 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.134564 B = 6031.769956 C = 7315.174970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 C -0.114 4.114 4 C -0.081 4.081 5 C -0.040 4.040 6 C -0.087 4.087 7 C -0.025 4.025 8 N -0.470 5.470 9 C -0.018 4.018 10 C 0.062 3.938 11 C -0.451 4.451 12 H 0.083 0.917 13 C 0.075 3.925 14 N -0.793 5.793 15 Si 0.912 3.088 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.119 4.119 20 C -0.078 4.078 21 C -0.202 4.202 22 C 0.108 3.892 23 O -0.318 6.318 24 C 0.029 3.971 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.284 0.716 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 -7.520 10.060 12.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C -0.115 4.115 4 C -0.099 4.099 5 C -0.041 4.041 6 C -0.089 4.089 7 C -0.183 4.183 8 N -0.177 5.177 9 C -0.179 4.179 10 C 0.058 3.942 11 C -0.481 4.481 12 H 0.101 0.899 13 C -0.143 4.143 14 N -0.418 5.418 15 Si 0.736 3.264 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.187 1.187 19 C -0.145 4.145 20 C -0.096 4.096 21 C -0.221 4.221 22 C 0.064 3.936 23 O -0.232 6.232 24 C -0.067 4.067 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.095 0.905 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.140 0.860 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.593 -8.080 9.533 12.763 hybrid contribution 0.515 1.726 1.134 2.128 sum -2.078 -6.355 10.667 12.589 Atomic orbital electron populations 1.21708 0.95188 1.01065 1.02121 1.20304 0.95887 0.92381 1.02307 1.19070 1.05206 0.96911 0.90317 1.20971 0.97941 0.94301 0.96662 1.18871 0.99018 0.93259 0.92997 1.19417 1.02307 0.95200 0.92019 1.21780 1.09755 0.99235 0.87539 1.66935 1.09541 1.12117 1.29090 1.22546 1.06824 0.91397 0.97117 1.18465 0.90241 0.93923 0.91561 1.19533 1.28349 0.94269 1.05914 0.89856 1.25958 0.93637 1.00440 0.94311 1.69781 1.22062 1.36377 1.13545 0.86288 0.80807 0.80405 0.78863 1.18773 1.20226 1.18682 1.21830 1.01526 0.92106 0.99003 1.21161 0.97415 1.00015 0.90974 1.21085 1.07255 0.94606 0.99162 1.18775 0.97969 0.91532 0.85331 1.86006 1.82661 1.41465 1.13034 1.22972 1.01253 0.96880 0.85568 0.92670 0.92916 0.92651 0.91390 0.91135 0.85234 0.86087 0.85598 0.90522 0.84989 0.85115 0.85952 0.92881 0.88776 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.89 37.16 0.37 -1.33 16 2 C -0.07 -0.92 5.78 -27.88 -0.16 -1.08 16 3 C -0.11 -1.81 5.14 -104.52 -0.54 -2.34 16 4 C -0.08 -1.41 9.06 -39.28 -0.36 -1.77 16 5 C -0.04 -0.81 5.88 -104.88 -0.62 -1.43 16 6 C -0.09 -2.02 5.88 -104.82 -0.62 -2.64 16 7 C -0.03 -0.59 10.60 -16.96 -0.18 -0.77 16 8 N -0.47 -11.65 10.32 -12.28 -0.13 -11.78 16 9 C -0.02 -0.45 10.96 -16.73 -0.18 -0.63 16 10 C 0.06 1.62 5.59 -106.71 -0.60 1.03 16 11 C -0.45 -11.42 9.09 -37.73 -0.34 -11.77 16 12 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 13 C 0.07 1.79 5.20 -17.34 -0.09 1.70 16 14 N -0.79 -19.43 10.90 55.55 0.61 -18.82 16 15 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16 16 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 17 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 18 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 19 C -0.12 -3.00 8.16 -38.23 -0.31 -3.31 16 20 C -0.08 -1.45 9.43 -39.28 -0.37 -1.82 16 21 C -0.20 -3.24 9.02 -39.48 -0.36 -3.60 16 22 C 0.11 1.70 6.66 -39.14 -0.26 1.44 16 23 O -0.32 -4.35 9.62 -19.34 -0.19 -4.54 16 24 C 0.03 0.28 9.81 101.05 0.99 1.27 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 29 H 0.07 0.88 7.68 -51.93 -0.40 0.48 16 30 H 0.13 2.09 6.21 -52.49 -0.33 1.77 16 31 H 0.12 2.46 6.20 -52.49 -0.33 2.13 16 32 H 0.13 2.92 8.06 -52.49 -0.42 2.50 16 33 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 34 H 0.13 3.31 4.45 -52.49 -0.23 3.08 16 35 H 0.13 2.52 6.26 -52.48 -0.33 2.19 16 36 H 0.12 1.64 6.28 -52.49 -0.33 1.31 16 37 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.48 7.66 -51.93 -0.40 0.09 16 LS Contribution 325.14 15.07 4.90 4.90 Total: -1.00 -28.02 325.14 -8.27 -36.30 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -4.82 Total: 8.26 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: -3.62 Total: -27.05 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.48 Total: -30.60 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.19 Total: -4.54 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.02 -8.27 -36.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245790302.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.030 kcal (2) G-P(sol) polarization free energy of solvation -28.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds