Wall clock time and date at job start Tue Mar 31 2020 06:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47047 * 2 1 4 4 C 1.37750 * 119.95052 * 264.99721 * 3 2 1 5 5 C 1.39775 * 119.90247 * 180.02562 * 4 3 2 6 6 C 1.47702 * 120.09163 * 179.97438 * 5 4 3 7 7 C 1.39752 * 120.65823 * 310.24911 * 6 5 4 8 8 C 1.38334 * 118.47437 * 180.26631 * 7 6 5 9 9 C 1.39088 * 119.73580 * 359.48072 * 8 7 6 10 10 N 1.31266 * 121.35377 * 0.27867 * 9 8 7 11 11 C 1.33718 * 121.63910 * 359.97438 * 10 9 8 12 12 C 1.40760 * 119.94273 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99272 * 179.97438 * 12 11 10 14 14 C 1.40119 * 120.00414 * 0.02562 * 12 11 10 15 15 N 1.30715 * 119.99884 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00409 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47384 * 89.99134 * 16 14 12 18 18 H 1.48497 * 109.47304 * 210.00009 * 16 14 12 19 19 H 1.48506 * 109.46767 * 329.99680 * 16 14 12 20 20 C 1.39815 * 119.81414 * 0.24759 * 5 4 3 21 21 C 1.37713 * 119.89881 * 359.54123 * 20 5 4 22 22 C 1.38977 * 119.95273 * 85.02305 * 3 2 1 23 23 O 1.35787 * 119.90881 * 359.97438 * 22 3 2 24 24 C 1.42895 * 117.00120 * 179.97438 * 23 22 3 25 25 H 1.09005 * 109.47643 * 300.00549 * 1 2 3 26 26 H 1.09002 * 109.47441 * 60.00065 * 1 2 3 27 27 H 1.09000 * 109.47532 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46985 * 239.99399 * 2 1 3 29 29 H 1.08999 * 109.46717 * 119.99866 * 2 1 3 30 30 H 1.08001 * 120.04847 * 0.02610 * 4 3 2 31 31 H 1.08000 * 120.76276 * 359.97438 * 7 6 5 32 32 H 1.08002 * 120.13501 * 179.76569 * 8 7 6 33 33 H 1.07998 * 119.32015 * 180.25915 * 9 8 7 34 34 H 0.96996 * 120.00198 * 179.97438 * 15 14 12 35 35 H 1.07997 * 120.05383 * 179.72104 * 20 5 4 36 36 H 1.08004 * 119.95043 * 180.18012 * 21 20 5 37 37 H 1.09004 * 109.47077 * 179.97438 * 24 23 22 38 38 H 1.08991 * 109.47705 * 300.00222 * 24 23 22 39 39 H 1.08999 * 109.47272 * 60.00624 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3597 2.0345 -1.1890 5 6 2.8260 3.3522 -1.1878 6 6 3.1787 4.0141 -2.4602 7 6 4.0186 3.3838 -3.3824 8 6 4.3238 4.0473 -4.5573 9 6 3.7863 5.3073 -4.7977 10 7 2.9943 5.8894 -3.9276 11 6 2.6673 5.3000 -2.7727 12 6 1.8153 5.9570 -1.8651 13 1 1.5504 5.4815 -0.9323 14 6 1.3100 7.2273 -2.1723 15 7 1.6303 7.8025 -3.3016 16 14 0.1788 8.0989 -0.9683 17 1 0.9892 8.9202 -0.0334 18 1 -0.7569 8.9772 -1.7153 19 1 -0.5953 7.0919 -0.1987 20 6 2.9630 4.0400 0.0218 21 6 2.6293 3.4203 1.2054 22 6 2.1651 2.1098 1.1996 23 8 1.8413 1.5012 2.3694 24 6 2.0021 2.2667 3.5653 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 2.2561 1.4983 -2.1208 31 1 4.4238 2.4033 -3.1804 32 1 4.9733 3.5867 -5.2870 33 1 4.0257 5.8175 -5.7190 34 1 1.2803 8.6816 -3.5145 35 1 3.3272 5.0566 0.0276 36 1 2.7320 3.9518 2.1400 37 1 1.7086 1.6639 4.4248 38 1 3.0456 2.5640 3.6689 39 1 1.3742 3.1562 3.5145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245791853.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:16 Heat of formation + Delta-G solvation = 6.581078 kcal Electronic energy + Delta-G solvation = -21702.278191 eV Core-core repulsion = 18574.486616 eV Total energy + Delta-G solvation = -3127.791575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.83844 -38.30747 -36.77697 -33.96257 -33.66813 -31.40017 -30.28903 -29.26044 -28.29679 -26.76471 -25.67148 -23.48777 -22.49927 -21.41606 -20.88976 -19.58948 -17.70372 -17.35898 -16.01342 -15.59931 -15.49105 -15.15812 -14.43137 -14.19035 -13.93789 -13.85532 -13.50478 -13.01325 -12.86356 -12.58274 -12.28665 -12.13492 -11.81398 -11.62648 -11.50864 -11.42117 -11.26394 -11.13023 -10.89606 -10.71069 -10.55724 -10.38027 -10.13273 -9.77969 -9.45333 -8.40878 -8.22809 -7.86424 -7.62645 -7.05491 -6.48420 -4.56315 1.87833 1.94827 2.72536 3.00520 3.03777 3.07501 3.18153 3.60622 3.88040 4.38340 4.68452 5.12279 5.16164 5.25333 5.27600 5.45812 5.55929 5.66569 5.68883 5.80746 5.83296 6.01177 6.03699 6.06983 6.08051 6.17542 6.24979 6.35990 6.48275 6.50880 6.67764 6.82554 6.92243 6.94563 7.07848 7.27130 7.30948 7.35993 7.59169 7.73126 7.86709 8.00576 8.19206 8.57420 8.86994 10.03442 10.21733 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.006292 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.802435 B = 4448.837222 C = 5707.665994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 C -0.115 4.115 4 C -0.092 4.092 5 C -0.004 4.004 6 C -0.231 4.231 7 C -0.035 4.035 8 C -0.321 4.321 9 C 0.131 3.869 10 N -0.483 5.483 11 C 0.268 3.732 12 C -0.421 4.421 13 H 0.093 0.907 14 C 0.068 3.932 15 N -0.709 5.709 16 Si 0.902 3.098 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.259 1.259 20 C -0.075 4.075 21 C -0.205 4.205 22 C 0.097 3.903 23 O -0.320 6.320 24 C 0.030 3.970 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.274 0.726 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 -7.937 8.446 11.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.116 4.116 4 C -0.110 4.110 5 C -0.005 4.005 6 C -0.236 4.236 7 C -0.060 4.060 8 C -0.344 4.344 9 C -0.038 4.038 10 N -0.194 5.194 11 C 0.144 3.856 12 C -0.451 4.451 13 H 0.111 0.889 14 C -0.158 4.158 15 N -0.329 5.329 16 Si 0.726 3.274 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.183 1.183 20 C -0.093 4.093 21 C -0.223 4.223 22 C 0.053 3.947 23 O -0.234 6.234 24 C -0.065 4.065 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.136 0.864 34 H 0.085 0.915 35 H 0.147 0.853 36 H 0.137 0.863 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.005 -7.079 8.214 10.890 hybrid contribution -0.002 -0.056 0.686 0.688 sum -1.007 -7.135 8.900 11.451 Atomic orbital electron populations 1.21705 0.95339 1.00819 1.02176 1.20273 0.95805 0.92705 1.01916 1.18990 1.05497 0.96655 0.90427 1.20989 0.99119 0.94760 0.96117 1.18628 0.96840 0.92241 0.92762 1.19326 1.09639 0.98793 0.95868 1.20893 0.95119 0.96906 0.93036 1.21214 1.12483 1.00133 1.00556 1.22602 0.92400 0.91479 0.97284 1.68767 1.14450 1.33611 1.02586 1.18530 0.90063 0.87132 0.89837 1.19792 1.22050 0.99672 1.03601 0.88869 1.26140 0.96321 0.97794 0.95540 1.70123 1.31049 1.12387 1.19330 0.86394 0.80302 0.79798 0.80927 1.19224 1.19948 1.18301 1.21200 0.97510 0.99801 0.90782 1.21068 1.07567 0.94561 0.99128 1.18760 0.99171 0.91645 0.85123 1.85959 1.82922 1.41486 1.13057 1.22929 1.01101 0.96850 0.85666 0.92637 0.92693 0.93136 0.91734 0.91364 0.86185 0.88578 0.88752 0.86439 0.91450 0.85284 0.86325 0.89026 0.93088 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.89 37.16 0.37 -1.53 16 2 C -0.07 -0.99 5.78 -27.88 -0.16 -1.15 16 3 C -0.12 -1.98 5.14 -104.53 -0.54 -2.52 16 4 C -0.09 -1.74 9.16 -39.19 -0.36 -2.10 16 5 C 0.00 -0.08 5.03 -104.87 -0.53 -0.61 16 6 C -0.23 -5.54 5.53 -104.08 -0.58 -6.12 16 7 C -0.04 -0.79 9.66 -38.98 -0.38 -1.16 16 8 C -0.32 -7.10 10.10 -39.23 -0.40 -7.50 16 9 C 0.13 3.13 11.17 -17.48 -0.20 2.93 16 10 N -0.48 -13.12 7.85 -10.90 -0.09 -13.20 16 11 C 0.27 7.14 6.56 -84.70 -0.56 6.59 16 12 C -0.42 -10.94 7.96 -37.92 -0.30 -11.24 16 13 H 0.09 2.31 5.25 -52.49 -0.28 2.03 16 14 C 0.07 1.71 5.50 -17.32 -0.10 1.61 16 15 N -0.71 -18.48 11.46 55.56 0.64 -17.85 16 16 Si 0.90 18.37 29.56 -169.99 -5.02 13.34 16 17 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 20 C -0.07 -1.50 7.56 -39.18 -0.30 -1.79 16 21 C -0.20 -3.56 9.02 -39.48 -0.36 -3.92 16 22 C 0.10 1.66 6.67 -39.02 -0.26 1.40 16 23 O -0.32 -4.81 9.61 -19.07 -0.18 -4.99 16 24 C 0.03 0.33 9.81 101.05 0.99 1.32 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 29 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 30 H 0.12 2.16 8.05 -52.49 -0.42 1.74 16 31 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 34 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 35 H 0.13 2.66 7.26 -52.49 -0.38 2.28 16 36 H 0.12 1.75 6.28 -52.48 -0.33 1.42 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.52 7.65 -51.93 -0.40 0.13 16 39 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 LS Contribution 327.24 15.07 4.93 4.93 Total: -1.00 -28.98 327.24 -8.47 -37.46 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -5.11 Total: 6.09 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -3.63 Total: -25.78 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.55 Total: -31.05 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.18 Total: -4.99 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.34 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.98 -8.47 -37.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245791853.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.038 kcal (2) G-P(sol) polarization free energy of solvation -28.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds