Wall clock time and date at job start Tue Mar 31 2020 06:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.47732 * 2 1 4 4 C 1.37762 * 119.95571 * 265.02811 * 3 2 1 5 5 C 1.39756 * 119.90901 * 179.97438 * 4 3 2 6 6 C 1.47737 * 120.09708 * 179.97438 * 5 4 3 7 7 C 1.39390 * 120.78665 * 309.72197 * 6 5 4 8 8 N 1.31641 * 120.64389 * 179.73130 * 7 6 5 9 9 C 1.32239 * 122.51295 * 0.58328 * 8 7 6 10 10 C 1.36433 * 121.52918 * 359.68014 * 9 8 7 11 11 C 1.41141 * 119.11371 * 0.02562 * 10 9 8 12 12 C 1.40871 * 121.11233 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00390 * 154.57950 * 12 11 10 14 14 C 1.40156 * 119.99763 * 334.57294 * 12 11 10 15 15 N 1.30704 * 120.00035 * 344.33485 * 14 12 11 16 16 Si 1.86797 * 119.99880 * 164.34038 * 14 12 11 17 17 H 1.48506 * 109.47302 * 89.99987 * 16 14 12 18 18 H 1.48501 * 109.47174 * 209.99793 * 16 14 12 19 19 H 1.48500 * 109.47321 * 330.00003 * 16 14 12 20 20 C 1.39798 * 119.81244 * 359.97438 * 5 4 3 21 21 C 1.37724 * 119.90389 * 359.72351 * 20 5 4 22 22 C 1.38966 * 119.95529 * 84.99526 * 3 2 1 23 23 O 1.35807 * 119.90373 * 359.97438 * 22 3 2 24 24 C 1.42894 * 117.00026 * 179.97438 * 23 22 3 25 25 H 1.08997 * 109.47110 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46891 * 300.00310 * 1 2 3 27 27 H 1.09001 * 109.47128 * 59.99565 * 1 2 3 28 28 H 1.09003 * 109.47083 * 240.00198 * 2 1 3 29 29 H 1.09001 * 109.47128 * 120.00435 * 2 1 3 30 30 H 1.08005 * 120.05002 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.67992 * 0.02562 * 7 6 5 32 32 H 1.08009 * 119.23334 * 179.70386 * 9 8 7 33 33 H 1.08002 * 120.44772 * 180.02562 * 10 9 8 34 34 H 0.97000 * 119.99770 * 179.97438 * 15 14 12 35 35 H 1.07999 * 120.04779 * 179.97438 * 20 5 4 36 36 H 1.07996 * 119.95615 * 180.29659 * 21 20 5 37 37 H 1.09001 * 109.47006 * 180.02562 * 24 23 22 38 38 H 1.09009 * 109.47400 * 300.00259 * 24 23 22 39 39 H 1.08995 * 109.47250 * 60.00165 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3593 2.0347 -1.1891 5 6 2.8247 3.3525 -1.1880 6 6 3.1770 4.0148 -2.4607 7 6 4.0235 3.3939 -3.3777 8 7 4.3314 3.9844 -4.5133 9 6 3.8740 5.1817 -4.8387 10 6 3.0431 5.8776 -4.0098 11 6 2.6651 5.3040 -2.7769 12 6 1.8089 5.9850 -1.8893 13 1 1.2082 5.4288 -1.1850 14 6 1.7368 7.3843 -1.9204 15 7 2.6615 8.0729 -2.5363 16 14 0.3194 8.2653 -1.0814 17 1 0.6856 8.5633 0.3267 18 1 0.0320 9.5343 -1.7972 19 1 -0.8864 7.3988 -1.1064 20 6 2.9559 4.0423 0.0209 21 6 2.6210 3.4230 1.2046 22 6 2.1648 2.1099 1.1994 23 8 1.8403 1.5013 2.3694 24 6 2.0007 2.2670 3.5652 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.2553 1.4988 -2.1210 31 1 4.4270 2.4169 -3.1565 32 1 4.1646 5.6188 -5.7827 33 1 2.6795 6.8542 -4.2933 34 1 2.6113 9.0413 -2.5580 35 1 3.3156 5.0606 0.0262 36 1 2.7175 3.9567 2.1385 37 1 1.7075 1.6641 4.4246 38 1 3.0443 2.5642 3.6692 39 1 1.3730 3.1566 3.5139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245792811.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:24 Heat of formation + Delta-G solvation = -5.988021 kcal Electronic energy + Delta-G solvation = -21684.926489 eV Core-core repulsion = 18556.589877 eV Total energy + Delta-G solvation = -3128.336612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.83538 -38.43619 -36.81927 -34.31924 -33.80920 -31.37432 -30.27365 -29.16288 -28.21013 -26.77867 -25.91662 -23.48985 -22.45271 -21.54270 -20.91991 -19.57249 -17.70970 -17.44755 -15.96948 -15.63665 -15.50030 -15.13654 -14.53923 -14.33418 -13.94733 -13.84392 -13.51751 -13.02325 -12.81032 -12.65338 -12.56351 -12.22995 -11.90559 -11.62503 -11.53324 -11.48130 -11.44238 -11.18960 -11.04920 -10.65359 -10.58446 -10.34032 -10.20858 -9.77979 -9.51240 -8.36654 -8.14286 -8.01882 -7.81715 -7.15757 -6.87801 -4.65551 1.85792 1.96268 2.69505 2.83941 2.95584 3.00446 3.18651 3.60318 3.76965 4.38044 4.55874 5.12336 5.16387 5.25196 5.27322 5.45735 5.54997 5.60398 5.66934 5.69675 5.75144 5.89863 6.01369 6.04127 6.08172 6.24487 6.25991 6.36928 6.48623 6.65944 6.80223 6.84171 6.96253 7.00056 7.05100 7.30255 7.32783 7.37534 7.52494 7.77125 7.88344 8.03562 8.37523 8.62795 8.67333 9.58334 9.93880 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013866 B = 0.006265 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.914147 B = 4468.423852 C = 5750.573016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 C -0.117 4.117 4 C -0.091 4.091 5 C -0.008 4.008 6 C -0.229 4.229 7 C 0.127 3.873 8 N -0.578 5.578 9 C 0.080 3.920 10 C -0.208 4.208 11 C 0.145 3.855 12 C -0.441 4.441 13 H 0.086 0.914 14 C 0.078 3.922 15 N -0.780 5.780 16 Si 0.907 3.093 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.258 1.258 20 C -0.064 4.064 21 C -0.207 4.207 22 C 0.100 3.900 23 O -0.320 6.320 24 C 0.030 3.970 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.285 0.715 35 H 0.130 0.870 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.102 -6.643 8.346 11.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.118 4.118 4 C -0.109 4.109 5 C -0.009 4.009 6 C -0.234 4.234 7 C -0.031 4.031 8 N -0.292 5.292 9 C -0.067 4.067 10 C -0.230 4.230 11 C 0.137 3.863 12 C -0.472 4.472 13 H 0.104 0.896 14 C -0.143 4.143 15 N -0.404 5.404 16 Si 0.731 3.269 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.182 1.182 20 C -0.083 4.083 21 C -0.226 4.226 22 C 0.055 3.945 23 O -0.234 6.234 24 C -0.065 4.065 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.096 0.904 35 H 0.148 0.852 36 H 0.136 0.864 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.536 -6.979 7.682 10.684 hybrid contribution -1.051 1.470 1.131 2.132 sum -3.587 -5.509 8.813 10.995 Atomic orbital electron populations 1.21703 0.95392 1.00817 1.02105 1.20271 0.95746 0.92715 1.01975 1.18981 1.05690 0.96684 0.90406 1.21010 0.98957 0.94747 0.96177 1.18594 0.97234 0.92273 0.92767 1.19508 1.08307 0.99574 0.96057 1.22106 0.94286 0.97354 0.89392 1.67308 1.29800 1.12198 1.19939 1.21706 0.95623 0.91121 0.98275 1.21892 1.03746 1.02239 0.95149 1.17743 0.88336 0.89152 0.91069 1.19581 1.20354 0.90906 1.16330 0.89564 1.26019 0.95915 0.98144 0.94200 1.69751 1.29281 1.08878 1.32495 0.86303 0.81817 0.78989 0.79787 1.19201 1.19838 1.18164 1.21211 0.96596 0.99790 0.90658 1.21082 1.07800 0.94466 0.99203 1.18784 0.98955 0.91598 0.85125 1.85965 1.82866 1.41515 1.13079 1.22931 1.01134 0.96820 0.85657 0.93136 0.92671 0.92743 0.91668 0.91361 0.86078 0.86131 0.86490 0.85728 0.90390 0.85248 0.86384 0.89023 0.93072 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.89 37.16 0.37 -1.49 16 2 C -0.07 -0.98 5.78 -27.89 -0.16 -1.14 16 3 C -0.12 -1.98 5.14 -104.53 -0.54 -2.52 16 4 C -0.09 -1.68 9.17 -39.19 -0.36 -2.04 16 5 C -0.01 -0.16 5.00 -104.87 -0.52 -0.69 16 6 C -0.23 -5.40 5.53 -104.04 -0.58 -5.97 16 7 C 0.13 2.92 10.72 -17.20 -0.18 2.74 16 8 N -0.58 -13.98 10.32 -13.36 -0.14 -14.12 16 9 C 0.08 1.92 11.08 -18.03 -0.20 1.72 16 10 C -0.21 -5.23 8.72 -39.13 -0.34 -5.57 16 11 C 0.14 3.68 5.59 -106.25 -0.59 3.08 16 12 C -0.44 -10.91 7.29 -37.87 -0.28 -11.19 16 13 H 0.09 2.11 6.70 -52.49 -0.35 1.76 16 14 C 0.08 1.82 5.21 -17.31 -0.09 1.73 16 15 N -0.78 -18.81 10.95 55.56 0.61 -18.20 16 16 Si 0.91 17.69 29.59 -169.99 -5.03 12.66 16 17 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 18 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 19 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 20 C -0.06 -1.29 8.06 -39.19 -0.32 -1.61 16 21 C -0.21 -3.60 9.02 -39.48 -0.36 -3.96 16 22 C 0.10 1.69 6.67 -39.02 -0.26 1.43 16 23 O -0.32 -4.78 9.61 -19.13 -0.18 -4.96 16 24 C 0.03 0.33 9.81 101.05 0.99 1.32 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 29 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 30 H 0.12 2.12 8.06 -52.48 -0.42 1.69 16 31 H 0.12 2.47 8.05 -52.49 -0.42 2.04 16 32 H 0.12 2.47 8.06 -52.48 -0.42 2.04 16 33 H 0.12 3.16 6.27 -52.49 -0.33 2.83 16 34 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 35 H 0.13 2.75 7.36 -52.49 -0.39 2.36 16 36 H 0.12 1.76 6.28 -52.49 -0.33 1.43 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.53 7.67 -51.92 -0.40 0.13 16 39 H 0.05 0.55 7.64 -51.93 -0.40 0.16 16 LS Contribution 327.15 15.07 4.93 4.93 Total: -1.00 -27.30 327.15 -8.33 -35.64 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.10 Total: 8.20 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -3.42 Total: -24.14 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.47 Total: -32.32 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.18 Total: -4.96 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.30 -8.33 -35.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245792811.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.648 kcal (2) G-P(sol) polarization free energy of solvation -27.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds