Wall clock time and date at job start Tue Mar 31 2020 05:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36000 * 117.00287 * 2 1 4 4 C 1.38513 * 120.07848 * 89.99288 * 3 2 1 5 5 C 1.50698 * 119.99320 * 359.97438 * 4 3 2 6 6 C 1.38277 * 120.01409 * 179.97438 * 4 3 2 7 7 C 1.38272 * 120.18932 * 0.04893 * 6 4 3 8 8 C 1.38210 * 120.15791 * 359.97438 * 7 6 4 9 9 C 1.38750 * 119.98080 * 359.97438 * 8 7 6 10 10 N 1.39977 * 120.08727 * 180.02562 * 9 8 7 11 11 C 1.39684 * 120.00328 * 352.52417 * 10 9 8 12 12 C 1.39360 * 119.95359 * 318.32792 * 11 10 9 13 13 C 1.38477 * 120.41992 * 179.72004 * 12 11 10 14 14 C 1.37695 * 120.32428 * 0.55466 * 13 12 11 15 15 C 1.40751 * 119.90245 * 359.72480 * 14 13 12 16 16 C 1.41405 * 120.21002 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99892 * 213.64099 * 16 15 14 18 18 C 1.39923 * 120.00166 * 33.63116 * 16 15 14 19 19 N 1.30830 * 119.99901 * 358.37355 * 18 16 15 20 20 Si 1.86802 * 120.00316 * 178.36704 * 18 16 15 21 21 H 1.48506 * 109.46789 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47067 * 120.00052 * 20 18 16 23 23 H 1.48497 * 109.47341 * 240.00786 * 20 18 16 24 24 C 1.38307 * 119.95547 * 138.60092 * 11 10 9 25 25 H 1.09006 * 109.47081 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47433 * 300.00098 * 1 2 3 27 27 H 1.09000 * 109.47312 * 60.00289 * 1 2 3 28 28 H 1.09001 * 109.46825 * 269.97073 * 5 4 3 29 29 H 1.09002 * 109.46907 * 29.97290 * 5 4 3 30 30 H 1.09002 * 109.47089 * 149.97514 * 5 4 3 31 31 H 1.08003 * 119.91037 * 180.02562 * 6 4 3 32 32 H 1.07997 * 119.91887 * 179.69552 * 7 6 4 33 33 H 1.08008 * 120.00266 * 179.97438 * 8 7 6 34 34 H 0.96998 * 119.99502 * 172.52241 * 10 9 8 35 35 H 1.08002 * 119.78957 * 0.02562 * 12 11 10 36 36 H 1.07991 * 119.83403 * 180.28246 * 13 12 11 37 37 H 1.08003 * 120.04733 * 179.74462 * 14 13 12 38 38 H 0.97000 * 119.99955 * 179.97438 * 19 18 16 39 39 H 1.08007 * 120.16219 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 2.3615 1.8303 1.1986 5 6 2.0195 1.1608 2.5046 6 6 2.9898 3.0621 1.1971 7 6 3.3046 3.6806 0.0011 8 6 2.9932 3.0703 -1.1992 9 6 2.3637 1.8338 -1.2056 10 7 2.0478 1.2135 -2.4200 11 6 2.2220 1.9026 -3.6225 12 6 1.8583 3.2448 -3.7142 13 6 2.0321 3.9388 -4.8998 14 6 2.5561 3.3066 -6.0051 15 6 2.9227 1.9498 -5.9294 16 6 3.4609 1.2939 -7.0606 17 1 3.2512 0.2479 -7.2290 18 6 4.2650 2.0001 -7.9620 19 7 4.4929 3.2748 -7.7755 20 14 5.0134 1.1229 -9.4317 21 1 4.6059 -0.3051 -9.4159 22 1 4.5348 1.7599 -10.6848 23 1 6.4938 1.2163 -9.3629 24 6 2.7499 1.2505 -4.7220 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.0218 1.4667 2.8194 29 1 2.0440 0.0787 2.3755 30 1 2.7453 1.4527 3.2636 31 1 3.2351 3.5428 2.1326 32 1 3.7909 4.6449 0.0050 33 1 3.2399 3.5558 -2.1320 34 1 1.7080 0.3050 -2.4265 35 1 1.4428 3.7482 -2.8538 36 1 1.7512 4.9799 -4.9591 37 1 2.6859 3.8511 -6.9288 38 1 5.0506 3.7643 -8.4002 39 1 3.0285 0.2092 -4.6533 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248533389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:03 Heat of formation + Delta-G solvation = 6.530806 kcal Electronic energy + Delta-G solvation = -21362.983688 eV Core-core repulsion = 18235.189933 eV Total energy + Delta-G solvation = -3127.793755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.13133 -38.04433 -36.88027 -35.22339 -33.24202 -31.80598 -29.94978 -29.67354 -27.52995 -26.97987 -26.01451 -25.24417 -22.02763 -21.68642 -20.68650 -19.99529 -17.57196 -17.42882 -16.81693 -15.77025 -15.52283 -15.27184 -14.78282 -14.72118 -14.20118 -13.67692 -13.53097 -13.37116 -13.17324 -12.92403 -12.37800 -12.22547 -12.15117 -11.89706 -11.66743 -11.44103 -11.20282 -11.12605 -10.95958 -10.89586 -10.43844 -10.08131 -9.96803 -9.67047 -9.49715 -9.20161 -8.30904 -7.83577 -7.45652 -6.72666 -6.46222 -4.45865 1.49085 1.75099 2.73045 2.93640 3.07341 3.11894 3.16697 3.68441 3.90989 3.99086 4.24571 4.64875 5.00764 5.15077 5.30143 5.37163 5.51238 5.53586 5.57257 5.59805 5.63066 5.80063 5.85136 5.99547 6.17820 6.24517 6.34752 6.53849 6.67709 6.84783 6.85652 6.95726 6.99663 7.07612 7.21739 7.25187 7.54205 7.69390 7.82569 7.97901 8.09934 8.29136 8.33671 8.61903 8.87826 8.91262 10.24707 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027838 B = 0.003852 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.569861 B = 7266.719763 C = 7651.752995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.329 6.329 3 C 0.005 3.995 4 C -0.065 4.065 5 C -0.108 4.108 6 C -0.175 4.175 7 C -0.078 4.078 8 C -0.182 4.182 9 C 0.211 3.789 10 N -0.675 5.675 11 C 0.163 3.837 12 C -0.253 4.253 13 C -0.095 4.095 14 C -0.162 4.162 15 C 0.122 3.878 16 C -0.464 4.464 17 H 0.076 0.924 18 C 0.071 3.929 19 N -0.808 5.808 20 Si 0.915 3.085 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.235 4.235 25 H 0.088 0.912 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.146 0.854 34 H 0.403 0.597 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.278 0.722 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.534 -1.226 12.972 13.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.246 6.246 3 C -0.043 4.043 4 C -0.066 4.066 5 C -0.165 4.165 6 C -0.195 4.195 7 C -0.096 4.096 8 C -0.204 4.204 9 C 0.106 3.894 10 N -0.295 5.295 11 C 0.069 3.931 12 C -0.274 4.274 13 C -0.114 4.114 14 C -0.182 4.182 15 C 0.119 3.881 16 C -0.495 4.495 17 H 0.094 0.906 18 C -0.144 4.144 19 N -0.435 5.435 20 Si 0.739 3.261 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.257 4.257 25 H 0.106 0.894 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.163 0.837 34 H 0.239 0.761 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.146 0.854 38 H 0.089 0.911 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.300 -1.134 12.728 13.483 hybrid contribution 0.164 -0.463 -0.682 0.841 sum -4.136 -1.596 12.046 12.836 Atomic orbital electron populations 1.22983 0.80543 1.02474 1.00509 1.86067 1.19018 1.25227 1.94240 1.17887 1.06166 0.89538 0.90698 1.19812 0.98508 0.94271 0.94006 1.20657 1.01160 1.00956 0.93726 1.20631 1.05322 0.95693 0.97893 1.20944 0.97718 0.99179 0.91801 1.21231 1.03442 0.95852 0.99897 1.18203 0.93579 0.92318 0.85273 1.42188 1.68789 1.16610 1.01877 1.17409 0.99003 0.92248 0.84399 1.20362 1.13916 0.94462 0.98659 1.20611 0.99799 0.97654 0.93335 1.21596 1.01946 0.96307 0.98310 1.17467 0.87738 0.91933 0.90942 1.19557 1.26901 0.97522 1.05486 0.90579 1.25862 0.95560 0.94725 0.98242 1.69767 1.30910 1.08236 1.34627 0.86157 0.79043 0.80426 0.80426 1.18595 1.19911 1.19945 1.20967 1.11153 1.00132 0.93399 0.89352 0.93958 0.93775 0.91797 0.91149 0.91689 0.86495 0.86126 0.83678 0.76138 0.88666 0.88939 0.85388 0.91121 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.13 101.05 1.12 1.48 16 2 O -0.33 -4.94 8.72 -19.74 -0.17 -5.11 16 3 C 0.00 0.08 5.71 -39.08 -0.22 -0.14 16 4 C -0.06 -0.93 5.89 -104.51 -0.62 -1.54 16 5 C -0.11 -1.19 9.79 36.00 0.35 -0.84 16 6 C -0.18 -2.39 9.69 -39.55 -0.38 -2.77 16 7 C -0.08 -1.15 10.04 -39.58 -0.40 -1.55 16 8 C -0.18 -3.23 8.03 -39.40 -0.32 -3.55 16 9 C 0.21 3.81 6.44 -83.54 -0.54 3.27 16 10 N -0.67 -12.89 5.46 -8.34 -0.05 -12.93 16 11 C 0.16 3.58 5.87 -83.84 -0.49 3.08 16 12 C -0.25 -5.50 7.38 -39.08 -0.29 -5.79 16 13 C -0.09 -2.16 10.02 -39.69 -0.40 -2.56 16 14 C -0.16 -4.10 8.66 -38.83 -0.34 -4.44 16 15 C 0.12 3.19 5.55 -106.85 -0.59 2.60 16 16 C -0.46 -12.18 9.05 -37.75 -0.34 -12.52 16 17 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 18 C 0.07 1.79 5.40 -17.35 -0.09 1.69 16 19 N -0.81 -20.74 10.62 55.55 0.59 -20.15 16 20 Si 0.91 18.77 29.56 -169.99 -5.02 13.74 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 C -0.23 -5.67 9.71 -38.67 -0.38 -6.04 16 25 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.79 7.52 -51.93 -0.39 0.40 16 30 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 31 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 32 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.15 2.83 5.35 -52.48 -0.28 2.55 16 34 H 0.40 7.14 8.21 -40.82 -0.34 6.81 16 35 H 0.10 1.94 6.63 -52.49 -0.35 1.59 16 36 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.13 3.38 6.14 -52.48 -0.32 3.05 16 38 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 39 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 LS Contribution 326.92 15.07 4.93 4.93 Total: -1.00 -27.46 326.92 -8.67 -36.12 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -5.02 Total: 13.02 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: -3.91 Total: -29.62 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.54 Total: -33.08 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.17 Total: -5.11 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.46 -8.67 -36.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248533389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.652 kcal (2) G-P(sol) polarization free energy of solvation -27.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds