Wall clock time and date at job start Tue Mar 31 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36000 * 117.00287 * 2 1 4 4 C 1.38513 * 120.07848 * 89.99288 * 3 2 1 5 5 C 1.50698 * 119.99320 * 359.97438 * 4 3 2 6 6 C 1.38277 * 120.01409 * 179.97438 * 4 3 2 7 7 C 1.38272 * 120.18932 * 0.04893 * 6 4 3 8 8 C 1.38210 * 120.15791 * 359.97438 * 7 6 4 9 9 C 1.38750 * 119.98080 * 359.97438 * 8 7 6 10 10 N 1.39977 * 120.08727 * 180.02562 * 9 8 7 11 11 C 1.39684 * 120.00328 * 352.52417 * 10 9 8 12 12 C 1.39360 * 119.95359 * 318.32792 * 11 10 9 13 13 C 1.38477 * 120.41992 * 179.72004 * 12 11 10 14 14 C 1.37695 * 120.32428 * 0.55466 * 13 12 11 15 15 C 1.40751 * 119.90245 * 359.72480 * 14 13 12 16 16 C 1.41405 * 120.21002 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99892 * 213.64099 * 16 15 14 18 18 C 1.39923 * 120.00166 * 33.63116 * 16 15 14 19 19 N 1.30830 * 119.99901 * 358.37355 * 18 16 15 20 20 Si 1.86802 * 120.00316 * 178.36704 * 18 16 15 21 21 H 1.48506 * 109.46789 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47067 * 120.00052 * 20 18 16 23 23 H 1.48497 * 109.47341 * 240.00786 * 20 18 16 24 24 C 1.38307 * 119.95547 * 138.60092 * 11 10 9 25 25 H 1.09006 * 109.47081 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47433 * 300.00098 * 1 2 3 27 27 H 1.09000 * 109.47312 * 60.00289 * 1 2 3 28 28 H 1.09001 * 109.46825 * 269.97073 * 5 4 3 29 29 H 1.09002 * 109.46907 * 29.97290 * 5 4 3 30 30 H 1.09002 * 109.47089 * 149.97514 * 5 4 3 31 31 H 1.08003 * 119.91037 * 180.02562 * 6 4 3 32 32 H 1.07997 * 119.91887 * 179.69552 * 7 6 4 33 33 H 1.08008 * 120.00266 * 179.97438 * 8 7 6 34 34 H 0.96998 * 119.99502 * 172.52241 * 10 9 8 35 35 H 1.08002 * 119.78957 * 0.02562 * 12 11 10 36 36 H 1.07991 * 119.83403 * 180.28246 * 13 12 11 37 37 H 1.08003 * 120.04733 * 179.74462 * 14 13 12 38 38 H 0.97000 * 119.99955 * 179.97438 * 19 18 16 39 39 H 1.08007 * 120.16219 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 2.3615 1.8303 1.1986 5 6 2.0195 1.1608 2.5046 6 6 2.9898 3.0621 1.1971 7 6 3.3046 3.6806 0.0011 8 6 2.9932 3.0703 -1.1992 9 6 2.3637 1.8338 -1.2056 10 7 2.0478 1.2135 -2.4200 11 6 2.2220 1.9026 -3.6225 12 6 1.8583 3.2448 -3.7142 13 6 2.0321 3.9388 -4.8998 14 6 2.5561 3.3066 -6.0051 15 6 2.9227 1.9498 -5.9294 16 6 3.4609 1.2939 -7.0606 17 1 3.2512 0.2479 -7.2290 18 6 4.2650 2.0001 -7.9620 19 7 4.4929 3.2748 -7.7755 20 14 5.0134 1.1229 -9.4317 21 1 4.6059 -0.3051 -9.4159 22 1 4.5348 1.7599 -10.6848 23 1 6.4938 1.2163 -9.3629 24 6 2.7499 1.2505 -4.7220 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.0218 1.4667 2.8194 29 1 2.0440 0.0787 2.3755 30 1 2.7453 1.4527 3.2636 31 1 3.2351 3.5428 2.1326 32 1 3.7909 4.6449 0.0050 33 1 3.2399 3.5558 -2.1320 34 1 1.7080 0.3050 -2.4265 35 1 1.4428 3.7482 -2.8538 36 1 1.7512 4.9799 -4.9591 37 1 2.6859 3.8511 -6.9288 38 1 5.0506 3.7643 -8.4002 39 1 3.0285 0.2092 -4.6533 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248533389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:02 Heat of formation + Delta-G solvation = -6.723160 kcal Electronic energy + Delta-G solvation = -21363.558423 eV Core-core repulsion = 18235.189933 eV Total energy + Delta-G solvation = -3128.368490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.39319 -39.67738 -38.09515 -36.78809 -35.02100 -32.97561 -31.78169 -31.11147 -28.92106 -28.19343 -27.28884 -26.89230 -23.39352 -23.18797 -22.33812 -21.54298 -19.23090 -18.77071 -18.09514 -17.42915 -16.87896 -16.64678 -16.37242 -16.19805 -15.51742 -15.17875 -14.83122 -14.57772 -14.48909 -14.25537 -14.09129 -13.53409 -13.44481 -13.17099 -12.90992 -12.89627 -12.82925 -12.69854 -12.45563 -12.12498 -12.02243 -11.81364 -11.48797 -11.30623 -11.02125 -10.85069 -9.49401 -9.46180 -9.30138 -8.55962 -8.05599 -6.43103 0.30940 0.46555 0.92732 1.16089 1.38497 1.49305 1.53606 2.21700 2.40686 2.62765 2.78011 3.07653 3.64407 3.92272 4.11339 4.35722 4.37287 4.45462 4.48617 4.51318 4.55194 4.61289 4.68874 4.78907 4.86536 4.93560 4.99601 5.08150 5.16080 5.21948 5.31732 5.37911 5.47211 5.57154 5.68377 5.81979 5.88191 5.97568 6.07681 6.19915 6.46380 6.60460 6.75518 6.81673 6.94544 7.03252 8.40220 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027838 B = 0.003852 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.569861 B = 7266.719763 C = 7651.752995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.342 6.342 3 C 0.003 3.997 4 C -0.069 4.069 5 C -0.105 4.105 6 C -0.163 4.163 7 C -0.078 4.078 8 C -0.205 4.205 9 C 0.180 3.820 10 N -0.678 5.678 11 C 0.177 3.823 12 C -0.245 4.245 13 C -0.092 4.092 14 C -0.188 4.188 15 C 0.096 3.904 16 C -0.501 4.501 17 H 0.072 0.928 18 C 0.030 3.970 19 N -0.838 5.838 20 Si 0.987 3.013 21 H -0.261 1.261 22 H -0.263 1.263 23 H -0.268 1.268 24 C -0.255 4.255 25 H 0.112 0.888 26 H 0.057 0.943 27 H 0.031 0.969 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.121 0.879 34 H 0.407 0.593 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.285 0.715 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.676 -1.155 15.492 16.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C -0.045 4.045 4 C -0.070 4.070 5 C -0.162 4.162 6 C -0.182 4.182 7 C -0.097 4.097 8 C -0.227 4.227 9 C 0.078 3.922 10 N -0.300 5.300 11 C 0.082 3.918 12 C -0.266 4.266 13 C -0.111 4.111 14 C -0.208 4.208 15 C 0.093 3.907 16 C -0.531 4.531 17 H 0.090 0.910 18 C -0.182 4.182 19 N -0.465 5.465 20 Si 0.808 3.192 21 H -0.184 1.184 22 H -0.188 1.188 23 H -0.193 1.193 24 C -0.277 4.277 25 H 0.131 0.869 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.139 0.861 34 H 0.243 0.757 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.096 0.904 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.457 -1.058 15.305 15.976 hybrid contribution 0.143 -0.459 -1.185 1.279 sum -4.313 -1.517 14.120 14.842 Atomic orbital electron populations 1.23162 0.78704 1.04196 1.00625 1.86028 1.20734 1.24821 1.94269 1.18107 1.06003 0.89674 0.90692 1.20272 0.97556 0.94491 0.94681 1.20719 1.02748 1.00399 0.92304 1.21069 1.03199 0.95184 0.98771 1.21235 0.97228 1.00031 0.91206 1.21177 1.05060 0.96249 1.00192 1.18464 0.95372 0.93081 0.85305 1.42026 1.69713 1.16761 1.01463 1.17417 0.97052 0.92393 0.84934 1.20542 1.12940 0.94424 0.98698 1.20870 0.98606 0.98821 0.92800 1.21507 1.04207 0.96366 0.98735 1.17779 0.88389 0.92716 0.91819 1.19797 1.28696 0.97703 1.06948 0.90985 1.26719 0.95420 0.95386 1.00698 1.69842 1.31420 1.09480 1.35776 0.85074 0.78150 0.79119 0.76808 1.18429 1.18772 1.19284 1.21042 1.12464 1.00269 0.93952 0.86933 0.92420 0.95010 0.90064 0.91566 0.89551 0.82919 0.83795 0.86140 0.75716 0.86931 0.86462 0.87033 0.90440 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.13 113.37 1.26 1.85 16 2 O -0.34 -9.73 8.72 -93.55 -0.82 -10.54 16 3 C 0.00 0.08 5.71 22.60 0.13 0.21 16 4 C -0.07 -1.75 5.89 -19.79 -0.12 -1.86 16 5 C -0.11 -1.88 9.79 71.24 0.70 -1.18 16 6 C -0.16 -3.82 9.69 22.29 0.22 -3.60 16 7 C -0.08 -2.14 10.04 22.27 0.22 -1.92 16 8 C -0.20 -7.15 8.03 22.39 0.18 -6.97 16 9 C 0.18 6.42 6.44 38.22 0.25 6.67 16 10 N -0.68 -26.29 5.46 -180.30 -0.99 -27.27 16 11 C 0.18 7.98 5.87 38.18 0.22 8.21 16 12 C -0.24 -10.77 7.38 22.60 0.17 -10.60 16 13 C -0.09 -4.27 10.02 22.20 0.22 -4.05 16 14 C -0.19 -9.97 8.66 22.76 0.20 -9.77 16 15 C 0.10 5.26 5.55 -21.31 -0.12 5.14 16 16 C -0.50 -27.57 9.05 23.46 0.21 -27.36 16 17 H 0.07 3.85 7.85 -2.91 -0.02 3.83 16 18 C 0.03 1.55 5.40 85.25 0.46 2.01 16 19 N -0.84 -44.41 10.62 21.82 0.23 -44.18 16 20 Si 0.99 39.20 29.56 68.60 2.03 41.22 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 23 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 24 C -0.26 -12.91 9.71 22.86 0.22 -12.69 16 25 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.27 7.52 -2.39 -0.02 1.25 16 30 H 0.09 1.20 8.09 -2.39 -0.02 1.18 16 31 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 32 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 33 H 0.12 4.76 5.35 -2.91 -0.02 4.74 16 34 H 0.41 14.72 8.21 -92.71 -0.76 13.96 16 35 H 0.11 4.54 6.63 -2.91 -0.02 4.52 16 36 H 0.12 4.72 8.06 -2.92 -0.02 4.70 16 37 H 0.11 6.20 6.14 -2.91 -0.02 6.18 16 38 H 0.28 13.67 8.30 -92.71 -0.77 12.90 16 39 H 0.09 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -61.81 326.92 5.19 -56.62 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: 0.31 Total: 40.06 kcal Atomic # 6 Polarization: -60.33 SS G_CDS: 4.42 Total: -55.91 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -0.75 Total: -71.45 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -0.82 Total: -10.54 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.22 kcal Total: -61.81 5.19 -56.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248533389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.899 kcal (2) G-P(sol) polarization free energy of solvation -61.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds