Wall clock time and date at job start Tue Mar 31 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38417 * 120.75696 * 2 1 4 4 C 1.38883 * 119.11088 * 179.75683 * 3 2 1 5 5 O 1.35675 * 119.68131 * 180.25101 * 4 3 2 6 6 C 1.42907 * 117.00102 * 180.27245 * 5 4 3 7 7 C 1.50699 * 109.47323 * 179.97438 * 6 5 4 8 8 C 1.38235 * 120.00014 * 269.72859 * 7 6 5 9 9 C 1.38235 * 119.99379 * 179.76602 * 8 7 6 10 10 C 1.38233 * 120.00462 * 0.50992 * 9 8 7 11 11 C 1.38235 * 119.99547 * 359.74166 * 10 9 8 12 12 C 1.38233 * 119.99505 * 89.99816 * 7 6 5 13 13 N 1.32270 * 120.63341 * 0.52298 * 4 3 2 14 14 C 1.31934 * 121.64771 * 359.72889 * 13 4 3 15 15 C 1.38094 * 120.83231 * 0.02562 * 14 13 4 16 16 C 1.50706 * 120.35432 * 180.02562 * 15 14 13 17 17 C 1.50692 * 109.46960 * 264.97493 * 16 15 14 18 18 H 1.08000 * 120.00440 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00004 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00040 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99932 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47081 * 60.00121 * 21 19 17 23 23 H 1.48502 * 109.46605 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47193 * 300.00060 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.72186 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.72286 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.72267 * 1 2 3 28 28 H 1.08001 * 120.44468 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.46507 * 300.00270 * 6 5 4 30 30 H 1.09004 * 109.46911 * 59.99897 * 6 5 4 31 31 H 1.07997 * 120.00089 * 359.97438 * 8 7 6 32 32 H 1.08005 * 119.99440 * 180.22678 * 9 8 7 33 33 H 1.07994 * 120.00178 * 179.72895 * 10 9 8 34 34 H 1.08001 * 119.99611 * 179.97438 * 11 10 9 35 35 H 1.07999 * 120.00579 * 0.02562 * 12 7 6 36 36 H 1.07996 * 119.58405 * 179.97438 * 14 13 4 37 37 H 1.08999 * 109.47099 * 24.97537 * 16 15 14 38 38 H 1.08997 * 109.46560 * 144.97718 * 16 15 14 39 39 H 0.97001 * 120.00334 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2149 1.1895 0.0000 4 6 3.6031 1.1496 0.0051 5 8 4.3085 2.3085 0.0104 6 6 5.7335 2.2008 0.0095 7 6 6.3416 3.5796 0.0151 8 6 6.6253 4.2148 -1.1795 9 6 7.1787 5.4815 -1.1741 10 6 7.4581 6.1088 0.0256 11 6 7.1791 5.4714 1.2201 12 6 6.6208 4.2068 1.2149 13 7 4.2442 -0.0074 -0.0004 14 6 3.5972 -1.1572 -0.0056 15 6 2.2167 -1.1926 -0.0060 16 6 1.4887 -2.5122 -0.0114 17 6 1.1374 -2.8862 -1.4282 18 1 1.4139 -2.2339 -2.2434 19 6 0.4628 -4.0611 -1.6840 20 7 0.1256 -4.8552 -0.6914 21 14 0.0267 -4.5244 -3.4404 22 1 1.2696 -4.6419 -4.2445 23 1 -0.6906 -5.8247 -3.4456 24 1 -0.8451 -3.4752 -4.0271 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 -0.8875 -0.5181 27 1 -0.3633 0.8925 -0.5095 28 1 1.6946 2.1359 -0.0004 29 1 6.0572 1.6568 0.8968 30 1 6.0568 1.6651 -0.8832 31 1 6.4116 3.7227 -2.1168 32 1 7.3970 5.9793 -2.1075 33 1 7.8944 7.0967 0.0297 34 1 7.3978 5.9613 2.1574 35 1 6.4036 3.7087 2.1481 36 1 4.1543 -2.0824 -0.0105 37 1 2.1288 -3.2820 0.4196 38 1 0.5763 -2.4260 0.5786 39 1 -0.3493 -5.6817 -0.8713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:52 Heat of formation + Delta-G solvation = -9.332168 kcal Electronic energy + Delta-G solvation = -20530.000324 eV Core-core repulsion = 17401.518699 eV Total energy + Delta-G solvation = -3128.481625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64336 -40.27536 -38.90676 -35.71408 -34.50200 -33.40441 -32.32710 -31.84177 -29.33367 -28.42861 -27.17497 -25.33023 -23.56585 -23.52376 -22.43247 -21.84328 -18.88147 -18.49210 -18.27241 -17.43582 -17.17549 -16.74973 -16.11460 -15.78022 -15.68846 -15.42313 -14.80985 -14.78183 -14.31667 -14.13962 -13.86443 -13.74608 -13.54474 -13.53118 -13.27417 -13.16099 -12.84652 -12.49420 -12.44666 -12.19335 -11.98947 -11.84061 -11.61123 -11.49305 -10.65232 -10.46448 -10.29906 -9.86783 -9.81223 -9.20815 -8.16763 -6.28956 0.23356 0.26519 0.42327 0.45846 1.42376 1.43298 1.51536 2.10667 2.41441 2.87609 2.92882 3.14269 3.42720 3.72510 3.84270 4.02151 4.08895 4.15030 4.21628 4.26206 4.26644 4.38519 4.48241 4.61431 4.70984 4.71772 4.83444 4.86168 5.00402 5.04919 5.11498 5.22006 5.36157 5.44232 5.50447 5.56707 5.61261 5.64549 5.76362 5.83215 6.04813 6.19303 6.32217 6.81754 6.93000 7.39109 8.91514 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.033242 B = 0.002962 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.118182 B = 9451.068391 C = 9664.890803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.015 4.015 3 C -0.189 4.189 4 C 0.288 3.712 5 O -0.310 6.310 6 C 0.116 3.884 7 C -0.113 4.113 8 C -0.111 4.111 9 C -0.128 4.128 10 C -0.113 4.113 11 C -0.127 4.127 12 C -0.110 4.110 13 N -0.551 5.551 14 C 0.121 3.879 15 C -0.143 4.143 16 C 0.071 3.929 17 C -0.522 4.522 18 H 0.049 0.951 19 C 0.012 3.988 20 N -0.926 5.926 21 Si 0.956 3.044 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.268 1.268 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.158 0.842 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.125 0.875 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.128 0.872 36 H 0.159 0.841 37 H 0.006 0.994 38 H 0.018 0.982 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.301 20.458 2.048 23.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.023 4.023 3 C -0.209 4.209 4 C 0.109 3.891 5 O -0.218 6.218 6 C 0.041 3.959 7 C -0.113 4.113 8 C -0.130 4.130 9 C -0.146 4.146 10 C -0.131 4.131 11 C -0.145 4.145 12 C -0.128 4.128 13 N -0.275 5.275 14 C -0.033 4.033 15 C -0.146 4.146 16 C 0.034 3.966 17 C -0.560 4.560 18 H 0.068 0.932 19 C -0.187 4.187 20 N -0.565 5.565 21 Si 0.781 3.219 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.193 1.193 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.175 0.825 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.164 0.836 33 H 0.169 0.831 34 H 0.166 0.834 35 H 0.146 0.854 36 H 0.176 0.824 37 H 0.025 0.975 38 H 0.036 0.964 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.050 20.576 2.089 23.936 hybrid contribution -0.963 -1.125 -0.759 1.664 sum 11.087 19.451 1.330 22.429 Atomic orbital electron populations 1.20838 0.88824 1.03900 1.03294 1.20253 0.97901 0.91048 0.93102 1.21039 0.90896 0.99829 1.09145 1.19858 0.89381 0.84917 0.94899 1.86244 1.20818 1.26229 1.88543 1.21361 0.77257 0.94553 1.02721 1.19667 1.01394 0.95361 0.94883 1.21292 0.98349 0.95905 0.97416 1.21476 0.98881 0.94488 0.99715 1.21612 0.98531 1.00871 0.92077 1.21485 0.98791 0.94475 0.99738 1.21294 0.98234 0.95933 0.97325 1.67244 1.41528 0.98389 1.20320 1.22317 0.91554 0.94504 0.94910 1.21192 0.95052 0.97395 1.00940 1.17922 0.94264 0.88099 0.96365 1.21232 1.36620 1.05380 0.92748 0.93227 1.25774 0.95650 0.96242 1.01028 1.70045 1.40630 1.12852 1.33005 0.85635 0.78534 0.77609 0.80105 1.19804 1.20727 1.19271 0.89711 0.91433 0.89295 0.82463 0.91237 0.91569 0.85694 0.83573 0.83095 0.83436 0.85440 0.82373 0.97544 0.96391 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.77 9.31 71.24 0.66 -3.11 16 2 C -0.02 -0.59 5.91 -19.69 -0.12 -0.70 16 3 C -0.19 -6.48 9.74 22.47 0.22 -6.26 16 4 C 0.29 10.40 7.49 84.78 0.63 11.04 16 5 O -0.31 -10.08 10.10 -89.93 -0.91 -10.99 16 6 C 0.12 3.22 5.44 71.24 0.39 3.61 16 7 C -0.11 -2.67 5.51 -19.87 -0.11 -2.78 16 8 C -0.11 -2.34 9.70 22.27 0.22 -2.12 16 9 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 10 C -0.11 -1.62 10.05 22.27 0.22 -1.39 16 11 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 12 C -0.11 -2.24 9.70 22.27 0.22 -2.02 16 13 N -0.55 -21.15 9.22 -308.94 -2.85 -23.99 16 14 C 0.12 4.94 10.83 84.64 0.92 5.86 16 15 C -0.14 -6.22 5.09 -19.77 -0.10 -6.32 16 16 C 0.07 3.60 4.45 29.10 0.13 3.73 16 17 C -0.52 -28.47 8.42 25.60 0.22 -28.25 16 18 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 19 C 0.01 0.65 5.46 84.66 0.46 1.11 16 20 N -0.93 -53.74 13.29 21.45 0.28 -53.45 16 21 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 26 H 0.07 2.71 6.35 -2.39 -0.02 2.69 16 27 H 0.09 2.42 8.10 -2.38 -0.02 2.40 16 28 H 0.16 4.44 8.06 -2.91 -0.02 4.42 16 29 H 0.07 1.92 8.05 -2.39 -0.02 1.90 16 30 H 0.07 1.88 8.05 -2.38 -0.02 1.86 16 31 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 32 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 34 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.16 6.12 8.06 -2.91 -0.02 6.10 16 37 H 0.01 0.34 8.06 -2.39 -0.02 0.32 16 38 H 0.02 0.95 7.09 -2.39 -0.02 0.93 16 39 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -63.78 336.93 4.00 -59.79 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 1.04 Total: 14.69 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 4.40 Total: -31.26 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -2.56 Total: -77.45 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -0.91 Total: -10.99 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -63.78 4.00 -59.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.454 kcal (2) G-P(sol) polarization free energy of solvation -63.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds