Wall clock time and date at job start Tue Mar 31 2020 05:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99706 * 2 1 4 4 H 1.48500 * 109.47279 * 270.00286 * 3 2 1 5 5 H 1.48503 * 109.47234 * 30.00190 * 3 2 1 6 6 H 1.48495 * 109.47040 * 149.99785 * 3 2 1 7 7 C 1.37873 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99728 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00366 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47192 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.46812 * 180.02562 * 10 9 7 12 12 C 1.38260 * 120.39162 * 269.95172 * 11 10 9 13 13 N 1.31846 * 120.88733 * 180.02562 * 12 11 10 14 14 C 1.31844 * 121.78099 * 0.02562 * 13 12 11 15 15 C 1.38705 * 120.68466 * 0.02634 * 14 13 12 16 16 O 1.35908 * 120.47128 * 179.97438 * 15 14 13 17 17 C 1.42901 * 117.00330 * 0.02562 * 16 15 14 18 18 C 1.50694 * 109.47288 * 180.02562 * 17 16 15 19 19 C 1.38241 * 119.99976 * 269.72487 * 18 17 16 20 20 C 1.38230 * 120.00279 * 179.76530 * 19 18 17 21 21 C 1.38241 * 119.99587 * 0.50364 * 20 19 18 22 22 C 1.38233 * 120.00089 * 359.74814 * 21 20 19 23 23 C 1.38232 * 120.00236 * 89.99379 * 18 17 16 24 24 C 1.38542 * 120.39040 * 90.00094 * 11 10 9 25 25 H 0.96997 * 120.00467 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47018 * 60.00024 * 9 7 2 27 27 H 1.09002 * 109.47386 * 299.99766 * 9 7 2 28 28 H 1.09000 * 109.47099 * 60.00098 * 10 9 7 29 29 H 1.08994 * 109.47071 * 299.99928 * 10 9 7 30 30 H 1.08000 * 119.55243 * 0.05381 * 12 11 10 31 31 H 1.08004 * 119.65420 * 179.97438 * 14 13 12 32 32 H 1.09005 * 109.46246 * 299.99664 * 17 16 15 33 33 H 1.08994 * 109.47231 * 59.99684 * 17 16 15 34 34 H 1.08004 * 119.99857 * 359.97438 * 19 18 17 35 35 H 1.08000 * 120.00136 * 180.22718 * 20 19 18 36 36 H 1.07998 * 119.99729 * 179.72342 * 21 20 19 37 37 H 1.08001 * 119.99728 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.99929 * 0.02562 * 23 18 17 39 39 H 1.07995 * 120.81131 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4920 -4.9671 -0.0025 12 6 1.1436 -5.5742 1.1899 13 7 0.4849 -6.7163 1.2007 14 6 0.1324 -7.3252 0.0857 15 6 0.4473 -6.7783 -1.1495 16 8 0.0823 -7.4100 -2.2962 17 6 -0.6289 -8.6419 -2.1601 18 6 -0.9463 -9.1923 -3.5266 19 6 -2.1313 -8.8508 -4.1512 20 6 -2.4203 -9.3517 -5.4067 21 6 -1.5290 -10.2026 -6.0333 22 6 -0.3464 -10.5483 -5.4065 23 6 -0.0551 -10.0432 -4.1532 24 6 1.1410 -5.5732 -1.1978 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5572 0.8897 28 1 2.8728 -3.6047 0.8877 29 1 2.8714 -3.6039 -0.8922 30 1 1.4144 -5.1064 2.1249 31 1 -0.4063 -8.2600 0.1347 32 1 -0.0143 -9.3578 -1.6143 33 1 -1.5559 -8.4679 -1.6138 34 1 -2.8298 -8.1898 -3.6596 35 1 -3.3444 -9.0819 -5.8962 36 1 -1.7568 -10.5975 -7.0123 37 1 0.3497 -11.2134 -5.8959 38 1 0.8686 -10.3138 -3.6632 39 1 1.4004 -5.1217 -2.1440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060182.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:37 Heat of formation + Delta-G solvation = 6.158052 kcal Electronic energy + Delta-G solvation = -20200.176181 eV Core-core repulsion = 17072.366262 eV Total energy + Delta-G solvation = -3127.809919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.52838 -39.49182 -37.93532 -34.45715 -32.73254 -32.38009 -31.20611 -30.47257 -29.03059 -26.82761 -25.20775 -23.27597 -22.89311 -22.45341 -21.49362 -20.30267 -17.73156 -17.38229 -16.46867 -16.42763 -16.26896 -16.19360 -15.32490 -14.82131 -14.49695 -14.05134 -13.71539 -13.52654 -13.28499 -13.05131 -12.83187 -12.78532 -12.48366 -12.23441 -11.80245 -11.58549 -11.36716 -11.20298 -11.14806 -10.94534 -10.66875 -9.97399 -9.88088 -9.28303 -9.21653 -9.18316 -9.03362 -8.81179 -8.37822 -8.13147 -6.02215 -4.05813 0.91289 1.10858 1.45096 1.60030 3.04807 3.31187 3.37583 3.40616 3.68944 4.09676 4.40598 4.44662 4.48696 4.67008 4.74461 4.80326 4.90505 4.92296 5.06785 5.19141 5.27569 5.33225 5.33577 5.41890 5.63622 5.65364 5.73316 5.79094 6.12819 6.20042 6.21278 6.26544 6.26812 6.54692 6.66662 6.74284 6.75454 6.98486 7.35614 7.63147 7.74377 7.96275 8.23642 8.36026 9.00879 9.58594 11.08841 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.021690 B = 0.002872 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.607199 B = 9747.435796 C =10501.584915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.077 4.077 11 C -0.064 4.064 12 C 0.060 3.940 13 N -0.452 5.452 14 C -0.007 4.007 15 C 0.077 3.923 16 O -0.305 6.305 17 C 0.099 3.901 18 C -0.093 4.093 19 C -0.094 4.094 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.125 4.125 23 C -0.095 4.095 24 C -0.111 4.111 25 H 0.261 0.739 26 H 0.018 0.982 27 H 0.019 0.981 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.500 -21.867 -8.400 23.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.115 4.115 11 C -0.066 4.066 12 C -0.098 4.098 13 N -0.160 5.160 14 C -0.165 4.165 15 C 0.030 3.970 16 O -0.218 6.218 17 C 0.024 3.976 18 C -0.094 4.094 19 C -0.112 4.112 20 C -0.142 4.142 21 C -0.130 4.130 22 C -0.143 4.143 23 C -0.113 4.113 24 C -0.137 4.137 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.038 0.962 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.175 0.825 31 H 0.167 0.833 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.854 -22.097 -7.811 23.610 hybrid contribution 0.437 1.225 -0.750 1.501 sum -2.418 -20.872 -8.560 22.688 Atomic orbital electron populations 1.69969 1.06088 1.26711 1.50501 1.25026 0.94846 0.99306 0.95220 0.86577 0.79836 0.83376 0.78118 1.20651 1.21210 1.19808 1.21217 0.93083 0.90810 1.51036 0.92458 1.19092 0.93608 0.90349 0.97703 1.20851 0.98405 0.90251 1.02033 1.21254 0.95949 0.96996 0.92392 1.22603 0.97306 0.91740 0.98162 1.67463 1.09330 1.09210 1.30026 1.22664 1.04761 1.01683 0.87349 1.20013 0.96988 0.93754 0.86201 1.86144 1.71138 1.35769 1.28761 1.21577 0.96586 0.84829 0.94604 1.19508 0.95428 0.98651 0.95773 1.21144 0.96591 0.98403 0.95088 1.21180 0.99896 0.97894 0.95191 1.21239 0.94312 0.97666 0.99814 1.21158 0.97381 1.00495 0.95249 1.21101 0.98522 0.96609 0.95117 1.20869 0.99919 0.93134 0.99804 0.92921 0.96384 0.96236 0.91371 0.91677 0.82545 0.83341 0.91047 0.90940 0.85620 0.85708 0.85917 0.85785 0.85761 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.75 4.95 -27.88 -0.14 0.61 16 10 C -0.08 -1.55 5.31 -27.88 -0.15 -1.70 16 11 C -0.06 -1.17 5.15 -104.50 -0.54 -1.71 16 12 C 0.06 1.06 10.86 -17.54 -0.19 0.86 16 13 N -0.45 -7.75 10.36 -13.12 -0.14 -7.89 16 14 C -0.01 -0.11 10.22 -17.37 -0.18 -0.28 16 15 C 0.08 1.22 6.71 -39.07 -0.26 0.96 16 16 O -0.31 -4.37 10.13 -19.45 -0.20 -4.56 16 17 C 0.10 1.04 4.88 36.00 0.18 1.22 16 18 C -0.09 -0.96 5.51 -104.63 -0.58 -1.54 16 19 C -0.09 -0.91 9.70 -39.58 -0.38 -1.30 16 20 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 21 C -0.11 -0.89 10.05 -39.58 -0.40 -1.29 16 22 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 23 C -0.10 -0.88 9.70 -39.58 -0.38 -1.27 16 24 C -0.11 -1.93 9.81 -39.13 -0.38 -2.31 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 29 H 0.06 1.26 8.09 -51.93 -0.42 0.83 16 30 H 0.16 2.51 8.06 -52.49 -0.42 2.09 16 31 H 0.15 1.77 6.32 -52.48 -0.33 1.44 16 32 H 0.07 0.64 7.62 -51.93 -0.40 0.24 16 33 H 0.07 0.68 7.62 -51.93 -0.40 0.29 16 34 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 36 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.14 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -31.96 338.63 -9.44 -41.40 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.31 Total: -0.47 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -4.61 Total: -23.94 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.60 Total: -34.00 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.20 Total: -4.56 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.96 -9.44 -41.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060182.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.558 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds