Wall clock time and date at job start Tue Mar 31 2020 05:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99706 * 2 1 4 4 H 1.48500 * 109.47279 * 270.00286 * 3 2 1 5 5 H 1.48503 * 109.47234 * 30.00190 * 3 2 1 6 6 H 1.48495 * 109.47040 * 149.99785 * 3 2 1 7 7 C 1.37873 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99728 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00366 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47192 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.46812 * 180.02562 * 10 9 7 12 12 C 1.38260 * 120.39162 * 269.95172 * 11 10 9 13 13 N 1.31846 * 120.88733 * 180.02562 * 12 11 10 14 14 C 1.31844 * 121.78099 * 0.02562 * 13 12 11 15 15 C 1.38705 * 120.68466 * 0.02634 * 14 13 12 16 16 O 1.35908 * 120.47128 * 179.97438 * 15 14 13 17 17 C 1.42901 * 117.00330 * 0.02562 * 16 15 14 18 18 C 1.50694 * 109.47288 * 180.02562 * 17 16 15 19 19 C 1.38241 * 119.99976 * 269.72487 * 18 17 16 20 20 C 1.38230 * 120.00279 * 179.76530 * 19 18 17 21 21 C 1.38241 * 119.99587 * 0.50364 * 20 19 18 22 22 C 1.38233 * 120.00089 * 359.74814 * 21 20 19 23 23 C 1.38232 * 120.00236 * 89.99379 * 18 17 16 24 24 C 1.38542 * 120.39040 * 90.00094 * 11 10 9 25 25 H 0.96997 * 120.00467 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47018 * 60.00024 * 9 7 2 27 27 H 1.09002 * 109.47386 * 299.99766 * 9 7 2 28 28 H 1.09000 * 109.47099 * 60.00098 * 10 9 7 29 29 H 1.08994 * 109.47071 * 299.99928 * 10 9 7 30 30 H 1.08000 * 119.55243 * 0.05381 * 12 11 10 31 31 H 1.08004 * 119.65420 * 179.97438 * 14 13 12 32 32 H 1.09005 * 109.46246 * 299.99664 * 17 16 15 33 33 H 1.08994 * 109.47231 * 59.99684 * 17 16 15 34 34 H 1.08004 * 119.99857 * 359.97438 * 19 18 17 35 35 H 1.08000 * 120.00136 * 180.22718 * 20 19 18 36 36 H 1.07998 * 119.99729 * 179.72342 * 21 20 19 37 37 H 1.08001 * 119.99728 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.99929 * 0.02562 * 23 18 17 39 39 H 1.07995 * 120.81131 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4920 -4.9671 -0.0025 12 6 1.1436 -5.5742 1.1899 13 7 0.4849 -6.7163 1.2007 14 6 0.1324 -7.3252 0.0857 15 6 0.4473 -6.7783 -1.1495 16 8 0.0823 -7.4100 -2.2962 17 6 -0.6289 -8.6419 -2.1601 18 6 -0.9463 -9.1923 -3.5266 19 6 -2.1313 -8.8508 -4.1512 20 6 -2.4203 -9.3517 -5.4067 21 6 -1.5290 -10.2026 -6.0333 22 6 -0.3464 -10.5483 -5.4065 23 6 -0.0551 -10.0432 -4.1532 24 6 1.1410 -5.5732 -1.1978 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5572 0.8897 28 1 2.8728 -3.6047 0.8877 29 1 2.8714 -3.6039 -0.8922 30 1 1.4144 -5.1064 2.1249 31 1 -0.4063 -8.2600 0.1347 32 1 -0.0143 -9.3578 -1.6143 33 1 -1.5559 -8.4679 -1.6138 34 1 -2.8298 -8.1898 -3.6596 35 1 -3.3444 -9.0819 -5.8962 36 1 -1.7568 -10.5975 -7.0123 37 1 0.3497 -11.2134 -5.8959 38 1 0.8686 -10.3138 -3.6632 39 1 1.4004 -5.1217 -2.1440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060182.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:37 Heat of formation + Delta-G solvation = -10.638163 kcal Electronic energy + Delta-G solvation = -20200.904520 eV Core-core repulsion = 17072.366262 eV Total energy + Delta-G solvation = -3128.538257 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.72063 -40.28586 -39.00931 -36.21951 -34.37604 -33.45537 -31.84152 -31.79843 -30.63784 -27.81175 -26.90431 -24.61512 -23.97878 -23.53670 -22.50547 -21.72700 -18.98660 -18.42299 -18.27196 -17.64993 -17.37059 -17.11503 -16.52186 -16.08786 -15.67014 -15.21154 -14.82945 -14.60885 -14.49755 -14.30259 -14.16041 -14.06351 -13.81644 -13.55106 -13.14729 -13.01592 -12.80401 -12.50967 -12.43768 -12.02230 -11.88750 -11.83223 -11.75707 -11.29130 -10.56967 -10.44806 -10.29363 -9.86841 -9.84194 -9.40346 -8.19484 -6.31370 0.13585 0.21927 0.26889 0.45724 1.41884 1.43041 1.54283 2.10866 2.41762 2.77828 2.94713 3.14070 3.47662 3.62611 3.73079 3.81248 3.94084 4.04497 4.09663 4.23228 4.24085 4.25992 4.30298 4.44497 4.59463 4.70033 4.76759 4.82596 4.90706 5.00845 5.10989 5.11583 5.26541 5.49372 5.50079 5.54501 5.57101 5.58342 5.71862 5.83133 6.04222 6.21284 6.21725 6.85537 6.92928 7.38319 8.92304 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.021690 B = 0.002872 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.607199 B = 9747.435796 C =10501.584915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.036 3.964 10 C -0.062 4.062 11 C -0.080 4.080 12 C 0.050 3.950 13 N -0.463 5.463 14 C 0.002 3.998 15 C 0.084 3.916 16 O -0.317 6.317 17 C 0.092 3.908 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.132 4.132 21 C -0.115 4.115 22 C -0.130 4.130 23 C -0.107 4.107 24 C -0.125 4.125 25 H 0.263 0.737 26 H -0.013 1.013 27 H -0.007 1.007 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.165 0.835 31 H 0.185 0.815 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.134 0.866 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.871 -23.089 -9.112 24.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.001 4.001 10 C -0.100 4.100 11 C -0.081 4.081 12 C -0.107 4.107 13 N -0.171 5.171 14 C -0.156 4.156 15 C 0.036 3.964 16 O -0.230 6.230 17 C 0.018 3.982 18 C -0.113 4.113 19 C -0.130 4.130 20 C -0.150 4.150 21 C -0.133 4.133 22 C -0.148 4.148 23 C -0.125 4.125 24 C -0.151 4.151 25 H 0.072 0.928 26 H 0.006 0.994 27 H 0.011 0.989 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.183 0.817 31 H 0.201 0.799 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.145 0.855 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.152 0.848 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.211 -23.333 -8.523 24.940 hybrid contribution 0.150 1.450 -0.636 1.590 sum -2.062 -21.883 -9.159 23.812 Atomic orbital electron populations 1.70113 1.07939 1.27789 1.51677 1.26003 0.95722 1.03478 0.94720 0.85427 0.78748 0.78312 0.78452 1.19872 1.20954 1.18387 1.21694 0.93797 0.91938 1.50502 0.91491 1.18923 0.93988 0.92305 0.94889 1.20562 0.97288 0.89266 1.02872 1.21041 0.97197 0.96682 0.93230 1.22733 0.97574 0.92152 0.98244 1.67528 1.09603 1.09129 1.30875 1.23211 1.03574 1.02322 0.86533 1.19966 0.96182 0.93194 0.87035 1.86145 1.71325 1.37278 1.28217 1.21871 0.97045 0.83645 0.95592 1.19605 0.96116 0.99604 0.96005 1.21337 0.96806 0.98955 0.95889 1.21474 1.00831 0.97831 0.94885 1.21603 0.93933 0.97007 1.00730 1.21494 0.97916 1.00473 0.94929 1.21339 0.98809 0.96616 0.95754 1.20974 1.00528 0.94130 0.99511 0.92811 0.99410 0.98884 0.90222 0.91069 0.81746 0.79872 0.89107 0.89842 0.85464 0.84000 0.83518 0.83601 0.84783 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.54 -30.49 9.11 25.60 0.23 -30.26 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.04 1.90 4.95 29.85 0.15 2.05 16 10 C -0.06 -2.52 5.31 29.85 0.16 -2.36 16 11 C -0.08 -2.94 5.15 -19.79 -0.10 -3.04 16 12 C 0.05 1.76 10.86 84.70 0.92 2.68 16 13 N -0.46 -15.40 10.36 -195.43 -2.02 -17.42 16 14 C 0.00 0.05 10.22 84.80 0.87 0.91 16 15 C 0.08 2.57 6.71 22.60 0.15 2.72 16 16 O -0.32 -8.75 10.13 -92.52 -0.94 -9.69 16 17 C 0.09 1.81 4.88 71.23 0.35 2.15 16 18 C -0.11 -2.20 5.51 -19.87 -0.11 -2.31 16 19 C -0.11 -2.08 9.70 22.27 0.22 -1.86 16 20 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 21 C -0.11 -1.58 10.05 22.27 0.22 -1.35 16 22 C -0.13 -1.87 10.05 22.27 0.22 -1.64 16 23 C -0.11 -1.83 9.70 22.27 0.22 -1.61 16 24 C -0.13 -4.37 9.81 22.56 0.22 -4.15 16 25 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 26 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 27 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H 0.08 3.01 8.09 -2.39 -0.02 2.99 16 29 H 0.07 2.76 8.09 -2.39 -0.02 2.74 16 30 H 0.17 5.31 8.06 -2.91 -0.02 5.28 16 31 H 0.18 3.83 6.32 -2.91 -0.02 3.81 16 32 H 0.09 1.40 7.62 -2.38 -0.02 1.38 16 33 H 0.08 1.43 7.62 -2.39 -0.02 1.41 16 34 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 36 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.14 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -69.11 338.63 4.78 -64.33 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 1.03 Total: 13.33 kcal Atomic # 6 Polarization: -43.94 SS G_CDS: 4.40 Total: -39.54 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -1.74 Total: -74.58 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.94 Total: -9.69 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -69.11 4.78 -64.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060182.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.692 kcal (2) G-P(sol) polarization free energy of solvation -69.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds