Wall clock time and date at job start Tue Mar 31 2020 05:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00044 * 2 1 4 4 H 1.48507 * 109.47092 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47666 * 300.00224 * 3 2 1 6 6 H 1.48506 * 109.47079 * 59.99909 * 3 2 1 7 7 C 1.37876 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00110 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99703 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46886 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47132 * 179.97438 * 10 9 7 12 12 C 1.38424 * 120.44682 * 265.25179 * 11 10 9 13 13 C 1.38788 * 118.48619 * 180.24359 * 12 11 10 14 14 C 1.38091 * 119.28648 * 359.75515 * 13 12 11 15 15 N 1.31936 * 120.83342 * 359.97438 * 14 13 12 16 16 C 1.32276 * 121.64885 * 0.02562 * 15 14 13 17 17 O 1.35676 * 119.68324 * 179.97438 * 16 15 14 18 18 C 1.42898 * 117.00176 * 359.97438 * 17 16 15 19 19 C 1.50703 * 109.47171 * 180.02562 * 18 17 16 20 20 C 1.38234 * 119.99770 * 269.72826 * 19 18 17 21 21 C 1.38239 * 119.99901 * 179.76875 * 20 19 18 22 22 C 1.38240 * 119.99645 * 0.50240 * 21 20 19 23 23 C 1.38227 * 120.00205 * 359.74956 * 22 21 20 24 24 C 1.38232 * 119.99860 * 90.00268 * 19 18 17 25 25 H 0.97006 * 119.99817 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47255 * 60.00119 * 9 7 2 27 27 H 1.08997 * 109.47309 * 299.99643 * 9 7 2 28 28 H 1.09000 * 109.46903 * 59.99674 * 10 9 7 29 29 H 1.08997 * 109.47072 * 300.00054 * 10 9 7 30 30 H 1.07997 * 120.75502 * 359.97209 * 12 11 10 31 31 H 1.08000 * 120.35703 * 179.72430 * 13 12 11 32 32 H 1.08003 * 119.58226 * 180.02562 * 14 13 12 33 33 H 1.09002 * 109.47259 * 300.00620 * 18 17 16 34 34 H 1.09001 * 109.47074 * 60.00642 * 18 17 16 35 35 H 1.08001 * 120.00330 * 359.97438 * 20 19 18 36 36 H 1.08001 * 119.99843 * 180.23314 * 21 20 19 37 37 H 1.08002 * 119.99612 * 179.72381 * 22 21 20 38 38 H 1.07996 * 120.00251 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.00407 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9671 0.0012 12 6 1.2269 -5.6236 1.1907 13 6 0.5343 -6.8255 1.1435 14 6 0.1288 -7.3239 -0.0788 15 7 0.3914 -6.6723 -1.1956 16 6 1.0487 -5.5245 -1.1913 17 8 1.2976 -4.8884 -2.3636 18 6 0.8218 -5.5159 -3.5560 19 6 1.1886 -4.6712 -4.7489 20 6 0.3190 -3.6951 -5.1982 21 6 0.6575 -2.9170 -6.2895 22 6 1.8611 -3.1222 -6.9379 23 6 2.7283 -4.1017 -6.4918 24 6 2.3921 -4.8764 -5.3972 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6043 0.8905 29 1 2.8718 -3.6044 -0.8894 30 1 1.5555 -5.2122 2.1336 31 1 0.3154 -7.3653 2.0530 32 1 -0.4107 -8.2586 -0.1210 33 1 1.2776 -6.5011 -3.6548 34 1 -0.2619 -5.6206 -3.5039 35 1 -0.6234 -3.5381 -4.6946 36 1 -0.0202 -2.1519 -6.6382 37 1 2.1236 -2.5173 -7.7932 38 1 3.6684 -4.2623 -6.9985 39 1 3.0693 -5.6423 -5.0492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060722.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:33 Heat of formation + Delta-G solvation = 9.279649 kcal Electronic energy + Delta-G solvation = -21149.676638 eV Core-core repulsion = 18022.002082 eV Total energy + Delta-G solvation = -3127.674556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.36719 -39.14908 -37.37237 -34.44765 -32.46096 -32.17215 -30.82738 -30.77082 -28.87431 -26.31651 -25.21837 -22.86027 -22.51628 -22.41751 -21.13276 -20.27201 -18.08052 -17.05441 -16.37266 -16.28151 -15.87062 -15.20113 -14.99071 -14.62005 -14.39866 -13.92022 -13.61116 -13.35707 -12.97421 -12.81088 -12.71131 -12.64638 -12.33607 -12.15894 -11.58230 -11.13085 -11.07513 -10.95048 -10.88364 -10.68852 -10.56676 -9.91965 -9.75610 -9.35288 -9.15739 -8.99052 -8.83089 -8.73460 -8.30082 -7.87331 -5.95105 -3.97080 1.29976 1.49132 1.54028 1.63467 3.33644 3.36674 3.40878 3.45364 4.02670 4.13827 4.49855 4.61582 4.84874 4.89282 5.06570 5.16750 5.18678 5.34078 5.36277 5.40821 5.47109 5.52231 5.63367 5.69544 5.72734 6.00820 6.02908 6.11297 6.18785 6.46787 6.50088 6.56856 6.66890 6.67433 6.77566 6.81764 7.04871 7.12752 7.65475 7.73344 7.88869 8.05098 8.17928 8.46349 9.09601 9.66209 11.16173 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.008819 B = 0.006728 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.278279 B = 4160.989990 C = 6777.845525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.033 3.967 10 C -0.068 4.068 11 C -0.122 4.122 12 C -0.052 4.052 13 C -0.210 4.210 14 C 0.114 3.886 15 N -0.544 5.544 16 C 0.319 3.681 17 O -0.284 6.284 18 C 0.114 3.886 19 C -0.092 4.092 20 C -0.089 4.089 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.127 4.127 24 C -0.096 4.096 25 H 0.259 0.741 26 H 0.020 0.980 27 H 0.014 0.986 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.151 0.849 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 -13.325 -7.997 15.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.004 4.004 10 C -0.106 4.106 11 C -0.124 4.124 12 C -0.077 4.077 13 C -0.230 4.230 14 C -0.041 4.041 15 N -0.268 5.268 16 C 0.140 3.860 17 O -0.191 6.191 18 C 0.038 3.962 19 C -0.092 4.092 20 C -0.107 4.107 21 C -0.140 4.140 22 C -0.132 4.132 23 C -0.145 4.145 24 C -0.115 4.115 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.032 0.968 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.156 0.844 31 H 0.148 0.852 32 H 0.169 0.831 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.342 -13.302 -8.871 16.044 hybrid contribution 0.460 1.158 0.785 1.473 sum 1.803 -12.144 -8.085 14.700 Atomic orbital electron populations 1.69990 1.06028 1.26333 1.51097 1.25003 0.94814 0.99137 0.95425 0.86571 0.80184 0.83942 0.77528 1.19710 1.21040 1.21060 1.21265 0.93038 0.90903 1.50220 0.92604 1.19037 0.93642 0.90394 0.97339 1.20664 0.98249 0.90164 1.01481 1.20445 1.02231 0.99496 0.90260 1.21369 0.95144 0.93469 0.97700 1.21882 1.03639 0.98342 0.99171 1.22175 0.96657 0.98261 0.87055 1.67249 1.17774 1.08956 1.32853 1.19663 0.91774 0.88336 0.86252 1.86447 1.74025 1.46712 1.11923 1.21312 0.99706 0.94473 0.80663 1.19594 0.95501 0.98149 0.95968 1.21145 0.99768 0.93939 0.95842 1.21159 0.97211 0.99425 0.96206 1.21180 0.94385 0.97784 0.99849 1.21093 0.99612 0.96515 0.97255 1.21045 0.95434 0.99494 0.95480 0.93159 0.96210 0.96812 0.92228 0.91582 0.84413 0.85176 0.83134 0.91228 0.91015 0.85679 0.85837 0.86129 0.86043 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.45 13.29 55.43 0.74 -26.71 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.88 4.96 -27.88 -0.14 0.75 16 10 C -0.07 -1.48 5.03 -27.88 -0.14 -1.62 16 11 C -0.12 -2.35 5.17 -104.32 -0.54 -2.89 16 12 C -0.05 -0.83 9.83 -39.31 -0.39 -1.22 16 13 C -0.21 -2.87 10.11 -39.43 -0.40 -3.27 16 14 C 0.11 1.60 11.18 -17.56 -0.20 1.41 16 15 N -0.54 -9.25 9.22 -13.33 -0.12 -9.37 16 16 C 0.32 6.09 7.47 -17.12 -0.13 5.96 16 17 O -0.28 -5.54 9.26 -18.73 -0.17 -5.72 16 18 C 0.11 1.79 5.44 36.01 0.20 1.98 16 19 C -0.09 -1.39 5.51 -104.62 -0.58 -1.97 16 20 C -0.09 -1.32 9.70 -39.58 -0.38 -1.71 16 21 C -0.12 -1.62 10.05 -39.58 -0.40 -2.01 16 22 C -0.11 -1.38 10.05 -39.58 -0.40 -1.78 16 23 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 24 C -0.10 -1.30 9.70 -39.58 -0.38 -1.68 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 29 H 0.07 1.47 7.71 -51.93 -0.40 1.07 16 30 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.15 1.57 8.06 -52.48 -0.42 1.15 16 33 H 0.07 0.99 8.05 -51.93 -0.42 0.57 16 34 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 35 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 36 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 340.06 15.07 5.12 5.12 Total: -1.00 -33.12 340.06 -9.56 -42.68 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.42 Total: 0.62 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -4.68 Total: -23.66 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.61 Total: -36.09 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.17 Total: -5.72 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.12 -9.56 -42.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060722.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.957 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds