Wall clock time and date at job start Tue Mar 31 2020 05:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00044 * 2 1 4 4 H 1.48507 * 109.47092 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47666 * 300.00224 * 3 2 1 6 6 H 1.48506 * 109.47079 * 59.99909 * 3 2 1 7 7 C 1.37876 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00110 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99703 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46886 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47132 * 179.97438 * 10 9 7 12 12 C 1.38424 * 120.44682 * 265.25179 * 11 10 9 13 13 C 1.38788 * 118.48619 * 180.24359 * 12 11 10 14 14 C 1.38091 * 119.28648 * 359.75515 * 13 12 11 15 15 N 1.31936 * 120.83342 * 359.97438 * 14 13 12 16 16 C 1.32276 * 121.64885 * 0.02562 * 15 14 13 17 17 O 1.35676 * 119.68324 * 179.97438 * 16 15 14 18 18 C 1.42898 * 117.00176 * 359.97438 * 17 16 15 19 19 C 1.50703 * 109.47171 * 180.02562 * 18 17 16 20 20 C 1.38234 * 119.99770 * 269.72826 * 19 18 17 21 21 C 1.38239 * 119.99901 * 179.76875 * 20 19 18 22 22 C 1.38240 * 119.99645 * 0.50240 * 21 20 19 23 23 C 1.38227 * 120.00205 * 359.74956 * 22 21 20 24 24 C 1.38232 * 119.99860 * 90.00268 * 19 18 17 25 25 H 0.97006 * 119.99817 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47255 * 60.00119 * 9 7 2 27 27 H 1.08997 * 109.47309 * 299.99643 * 9 7 2 28 28 H 1.09000 * 109.46903 * 59.99674 * 10 9 7 29 29 H 1.08997 * 109.47072 * 300.00054 * 10 9 7 30 30 H 1.07997 * 120.75502 * 359.97209 * 12 11 10 31 31 H 1.08000 * 120.35703 * 179.72430 * 13 12 11 32 32 H 1.08003 * 119.58226 * 180.02562 * 14 13 12 33 33 H 1.09002 * 109.47259 * 300.00620 * 18 17 16 34 34 H 1.09001 * 109.47074 * 60.00642 * 18 17 16 35 35 H 1.08001 * 120.00330 * 359.97438 * 20 19 18 36 36 H 1.08001 * 119.99843 * 180.23314 * 21 20 19 37 37 H 1.08002 * 119.99612 * 179.72381 * 22 21 20 38 38 H 1.07996 * 120.00251 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.00407 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9671 0.0012 12 6 1.2269 -5.6236 1.1907 13 6 0.5343 -6.8255 1.1435 14 6 0.1288 -7.3239 -0.0788 15 7 0.3914 -6.6723 -1.1956 16 6 1.0487 -5.5245 -1.1913 17 8 1.2976 -4.8884 -2.3636 18 6 0.8218 -5.5159 -3.5560 19 6 1.1886 -4.6712 -4.7489 20 6 0.3190 -3.6951 -5.1982 21 6 0.6575 -2.9170 -6.2895 22 6 1.8611 -3.1222 -6.9379 23 6 2.7283 -4.1017 -6.4918 24 6 2.3921 -4.8764 -5.3972 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6043 0.8905 29 1 2.8718 -3.6044 -0.8894 30 1 1.5555 -5.2122 2.1336 31 1 0.3154 -7.3653 2.0530 32 1 -0.4107 -8.2586 -0.1210 33 1 1.2776 -6.5011 -3.6548 34 1 -0.2619 -5.6206 -3.5039 35 1 -0.6234 -3.5381 -4.6946 36 1 -0.0202 -2.1519 -6.6382 37 1 2.1236 -2.5173 -7.7932 38 1 3.6684 -4.2623 -6.9985 39 1 3.0693 -5.6423 -5.0492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060722.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:32 Heat of formation + Delta-G solvation = -10.011312 kcal Electronic energy + Delta-G solvation = -21150.513157 eV Core-core repulsion = 18022.002082 eV Total energy + Delta-G solvation = -3128.511075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.66252 -40.22274 -38.64335 -36.27385 -34.38557 -33.28218 -32.20109 -31.85302 -30.53640 -27.49567 -27.10210 -24.25056 -23.99044 -23.54723 -22.33736 -21.92455 -19.37924 -18.57513 -18.20888 -17.42768 -17.17210 -16.53424 -16.34122 -16.10461 -15.73345 -15.34726 -14.82380 -14.57536 -14.49694 -14.34690 -14.12594 -13.97798 -13.77863 -13.42135 -13.28070 -12.91153 -12.77607 -12.39671 -12.25190 -12.00190 -11.89248 -11.79854 -11.69288 -11.25808 -10.62625 -10.56036 -10.51606 -9.87445 -9.81347 -9.23911 -8.20093 -6.31824 0.22984 0.26889 0.37328 0.44862 1.37903 1.38859 1.52380 2.16985 2.40040 2.86395 2.94279 3.12558 3.41946 3.71832 3.82683 4.00270 4.07441 4.12148 4.15726 4.23497 4.24763 4.35631 4.48542 4.59008 4.61735 4.69784 4.79960 4.86048 4.99745 5.09204 5.13480 5.18114 5.33823 5.47957 5.48751 5.54743 5.59719 5.62552 5.73683 5.82859 6.04234 6.22065 6.36532 6.84094 6.91742 7.37011 8.91918 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.008819 B = 0.006728 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.278279 B = 4160.989990 C = 6777.845525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.060 0.940 9 C 0.045 3.955 10 C -0.049 4.049 11 C -0.161 4.161 12 C -0.052 4.052 13 C -0.196 4.196 14 C 0.117 3.883 15 N -0.554 5.554 16 C 0.298 3.702 17 O -0.314 6.314 18 C 0.118 3.882 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.132 4.132 22 C -0.114 4.114 23 C -0.126 4.126 24 C -0.107 4.107 25 H 0.263 0.737 26 H -0.020 1.020 27 H -0.010 1.010 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.154 0.846 31 H 0.175 0.825 32 H 0.195 0.805 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.140 0.860 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 -14.101 -7.880 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.079 0.921 9 C 0.008 3.992 10 C -0.087 4.087 11 C -0.164 4.164 12 C -0.077 4.077 13 C -0.216 4.216 14 C -0.038 4.038 15 N -0.279 5.279 16 C 0.120 3.880 17 O -0.222 6.222 18 C 0.043 3.957 19 C -0.114 4.114 20 C -0.134 4.134 21 C -0.150 4.150 22 C -0.131 4.131 23 C -0.143 4.143 24 C -0.125 4.125 25 H 0.072 0.928 26 H -0.002 1.002 27 H 0.008 0.992 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.172 0.828 31 H 0.193 0.807 32 H 0.212 0.788 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.132 0.868 36 H 0.158 0.842 37 H 0.170 0.830 38 H 0.171 0.829 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.490 -14.089 -8.757 16.774 hybrid contribution 0.032 1.285 0.762 1.494 sum 2.522 -12.804 -7.995 15.304 Atomic orbital electron populations 1.70131 1.07876 1.27618 1.51772 1.25987 0.95753 1.03350 0.94652 0.85405 0.79155 0.78676 0.77878 1.18450 1.20474 1.19966 1.21682 0.93495 0.92151 1.50409 0.92130 1.18811 0.93835 0.92400 0.94152 1.20290 0.97095 0.90098 1.01262 1.20342 1.04682 0.99354 0.91997 1.21696 0.94760 0.94207 0.97087 1.22338 1.01411 0.97046 1.00787 1.23050 0.95268 0.99019 0.86470 1.67334 1.17746 1.08372 1.34408 1.19804 0.92804 0.89302 0.86083 1.86397 1.74624 1.48115 1.13076 1.21385 0.99304 0.95067 0.79958 1.19714 0.96669 0.98825 0.96217 1.21263 0.99867 0.95148 0.97151 1.21447 0.98330 0.99472 0.95773 1.21596 0.93523 0.97731 1.00288 1.21509 1.00692 0.95622 0.96515 1.21304 0.94962 1.00235 0.95974 0.92833 1.00173 0.99163 0.91006 0.93005 0.82813 0.80711 0.78805 0.90040 0.91716 0.86828 0.84237 0.82977 0.82890 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.94 13.29 21.45 0.28 -58.66 16 2 C 0.00 0.00 5.46 84.65 0.46 0.47 16 3 Si 0.96 45.63 29.54 68.60 2.03 47.66 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.54 -32.20 9.11 25.60 0.23 -31.97 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 9 C 0.05 2.56 4.96 29.85 0.15 2.71 16 10 C -0.05 -2.26 5.03 29.85 0.15 -2.11 16 11 C -0.16 -6.39 5.17 -19.67 -0.10 -6.49 16 12 C -0.05 -1.63 9.83 22.45 0.22 -1.41 16 13 C -0.20 -4.73 10.11 22.37 0.23 -4.51 16 14 C 0.12 2.99 11.18 84.64 0.95 3.94 16 15 N -0.55 -18.64 9.22 -308.93 -2.85 -21.49 16 16 C 0.30 11.78 7.47 84.78 0.63 12.42 16 17 O -0.31 -13.09 9.26 -89.93 -0.83 -13.92 16 18 C 0.12 3.93 5.44 71.24 0.39 4.32 16 19 C -0.11 -3.63 5.51 -19.87 -0.11 -3.74 16 20 C -0.12 -3.69 9.70 22.27 0.22 -3.47 16 21 C -0.13 -3.54 10.05 22.27 0.22 -3.32 16 22 C -0.11 -2.59 10.05 22.27 0.22 -2.36 16 23 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 24 C -0.11 -2.88 9.70 22.27 0.22 -2.67 16 25 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 26 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 27 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 28 H 0.07 3.00 8.06 -2.39 -0.02 2.98 16 29 H 0.05 2.44 7.71 -2.39 -0.02 2.43 16 30 H 0.15 4.17 8.06 -2.91 -0.02 4.14 16 31 H 0.18 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.20 3.18 8.06 -2.91 -0.02 3.15 16 33 H 0.08 2.42 8.05 -2.39 -0.02 2.40 16 34 H 0.06 2.16 8.05 -2.39 -0.02 2.14 16 35 H 0.11 3.68 8.06 -2.91 -0.02 3.66 16 36 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 37 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 38 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 39 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -75.32 340.06 3.96 -71.36 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 1.03 Total: 15.88 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 4.30 Total: -40.83 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -2.56 Total: -80.15 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.83 Total: -13.92 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -75.32 3.96 -71.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060722.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.349 kcal (2) G-P(sol) polarization free energy of solvation -75.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds