Wall clock time and date at job start Tue Mar 31 2020 05:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 C 1.38834 * 120.35130 * 90.00037 * 11 10 9 13 13 C 1.38381 * 118.47948 * 179.97438 * 12 11 10 14 14 C 1.38914 * 119.11288 * 0.02562 * 13 12 11 15 15 O 1.35681 * 119.68381 * 179.97438 * 14 13 12 16 16 C 1.42897 * 117.00263 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47238 * 180.02562 * 16 15 14 18 18 C 1.38230 * 119.99956 * 269.72619 * 17 16 15 19 19 C 1.38238 * 120.00116 * 179.76413 * 18 17 16 20 20 C 1.38235 * 119.99749 * 0.50905 * 19 18 17 21 21 C 1.38236 * 120.00071 * 359.74224 * 20 19 18 22 22 C 1.38235 * 119.99831 * 0.02562 * 21 20 19 23 23 N 1.32248 * 120.63427 * 0.02562 * 14 13 12 24 24 C 1.31964 * 121.64280 * 359.68891 * 23 14 13 25 25 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 27 27 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 28 28 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 29 29 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 30 30 H 1.07996 * 120.75617 * 359.95847 * 12 11 10 31 31 H 1.07999 * 120.43602 * 179.97438 * 13 12 11 32 32 H 1.09005 * 109.46736 * 299.99925 * 16 15 14 33 33 H 1.08994 * 109.47181 * 59.99627 * 16 15 14 34 34 H 1.07997 * 120.00199 * 359.97438 * 18 17 16 35 35 H 1.08001 * 119.99824 * 180.22989 * 19 18 17 36 36 H 1.08005 * 120.00089 * 179.72297 * 20 19 18 37 37 H 1.07994 * 120.00102 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.99941 * 179.97438 * 22 21 20 39 39 H 1.08005 * 119.57690 * 180.31048 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5285 -2.6368 -0.0001 12 6 6.2301 -2.6369 1.1979 13 6 7.6131 -2.6375 1.1527 14 6 8.2490 -2.6375 -0.0824 15 8 9.6045 -2.6375 -0.1403 16 6 10.1984 -2.6380 -1.4400 17 6 11.6995 -2.6387 -1.3064 18 6 12.3890 -1.4419 -1.2511 19 6 13.7654 -1.4424 -1.1236 20 6 14.4534 -2.6399 -1.0621 21 6 13.7643 -3.8368 -1.1227 22 6 12.3874 -3.8361 -1.2453 23 7 7.5457 -2.6363 -1.2024 24 6 6.2261 -2.6413 -1.1913 25 1 -0.4849 0.8401 0.0004 26 1 3.8746 -0.6809 0.8905 27 1 3.8752 -0.6798 -0.8895 28 1 3.6584 -3.1503 -0.8903 29 1 3.6578 -3.1508 0.8896 30 1 5.7083 -2.6363 2.1435 31 1 8.1904 -2.6373 2.0654 32 1 9.8820 -3.5283 -1.9837 33 1 9.8821 -1.7483 -1.9843 34 1 11.8520 -0.5064 -1.3039 35 1 14.3037 -0.5073 -1.0766 36 1 15.5292 -2.6404 -0.9671 37 1 14.3018 -4.7722 -1.0751 38 1 11.8492 -4.7712 -1.2931 39 1 5.6851 -2.6452 -2.1261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250061005.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:35 Heat of formation + Delta-G solvation = 9.654111 kcal Electronic energy + Delta-G solvation = -20141.034151 eV Core-core repulsion = 17013.375833 eV Total energy + Delta-G solvation = -3127.658318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.53312 -39.51787 -37.84492 -34.34509 -32.55789 -32.41050 -31.53595 -31.22017 -29.15514 -26.70885 -25.16859 -23.44870 -22.89857 -22.17201 -21.46278 -20.24713 -18.38450 -17.38597 -16.86345 -16.56142 -16.24093 -15.42571 -14.94049 -14.77444 -14.36021 -14.25506 -14.00719 -13.73132 -13.19760 -13.13306 -13.05199 -12.84578 -12.63330 -12.55043 -11.85544 -11.62475 -11.37305 -11.29248 -11.01899 -10.89754 -10.23138 -10.11116 -9.78036 -9.54926 -9.45057 -9.23412 -9.22955 -9.08447 -8.56516 -8.05375 -6.07324 -4.05893 0.91002 1.09016 1.36667 1.51947 3.01545 3.29518 3.37234 3.41390 3.64733 3.99094 4.43050 4.45530 4.52783 4.53498 4.69631 4.81014 5.02055 5.14069 5.19019 5.21152 5.26958 5.29067 5.36050 5.39455 5.55340 5.66514 5.72643 5.79658 6.11395 6.14740 6.17910 6.21258 6.28618 6.40505 6.56229 6.65095 6.65846 6.83306 7.23105 7.34841 7.37540 7.74736 8.03045 8.49376 8.97233 9.55083 11.05889 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.033535 B = 0.002715 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.737133 B =10310.705571 C =10761.269009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.062 4.062 11 C -0.146 4.146 12 C -0.044 4.044 13 C -0.187 4.187 14 C 0.298 3.702 15 O -0.305 6.305 16 C 0.114 3.886 17 C -0.093 4.093 18 C -0.096 4.096 19 C -0.124 4.124 20 C -0.114 4.114 21 C -0.125 4.125 22 C -0.096 4.096 23 N -0.540 5.540 24 C 0.133 3.867 25 H 0.263 0.737 26 H 0.016 0.984 27 H 0.012 0.988 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.892 -6.393 -1.557 27.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.044 4.044 10 C -0.100 4.100 11 C -0.148 4.148 12 C -0.070 4.070 13 C -0.207 4.207 14 C 0.120 3.880 15 O -0.213 6.213 16 C 0.039 3.961 17 C -0.094 4.094 18 C -0.114 4.114 19 C -0.142 4.142 20 C -0.132 4.132 21 C -0.143 4.143 22 C -0.114 4.114 23 N -0.263 5.263 24 C -0.022 4.022 25 H 0.073 0.927 26 H 0.034 0.966 27 H 0.031 0.969 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.159 0.841 31 H 0.154 0.846 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 27.388 -6.270 -2.152 28.179 hybrid contribution -0.111 1.008 0.561 1.159 sum 27.277 -5.262 -1.591 27.825 Atomic orbital electron populations 1.69910 1.06276 1.26928 1.50982 1.25018 0.94717 0.99150 0.94512 0.86800 0.80368 0.83687 0.78589 1.20255 1.21354 1.19036 1.21126 0.89296 0.94544 1.51045 0.90855 1.19570 0.97014 0.91304 0.96519 1.20519 0.86548 1.00483 1.02461 1.21243 0.99229 1.00982 0.93350 1.21402 0.92414 0.94109 0.99038 1.20999 0.94735 1.08542 0.96458 1.19710 0.83537 0.94572 0.90201 1.86261 1.15628 1.88517 1.30942 1.21314 0.87981 1.03301 0.83533 1.19660 0.93942 0.93752 1.01996 1.21138 0.94428 0.97670 0.98161 1.21170 0.94207 0.98297 1.00551 1.21223 0.99984 0.92623 0.99376 1.21160 0.94192 0.98276 1.00645 1.21119 0.94411 0.97599 0.98297 1.67275 1.09995 1.19218 1.29804 1.22344 0.87565 0.93950 0.98342 0.92694 0.96551 0.96935 0.91329 0.91389 0.84112 0.84638 0.90836 0.90797 0.85755 0.85798 0.85962 0.85818 0.85795 0.82349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -14.55 9.66 -34.44 -0.33 -14.89 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.16 4.02 -27.89 -0.11 -0.27 16 10 C -0.06 -1.16 5.31 -27.88 -0.15 -1.31 16 11 C -0.15 -2.42 5.15 -104.47 -0.54 -2.96 16 12 C -0.04 -0.66 9.85 -39.31 -0.39 -1.05 16 13 C -0.19 -2.68 10.04 -39.28 -0.39 -3.07 16 14 C 0.30 4.59 7.49 -17.12 -0.13 4.46 16 15 O -0.31 -4.34 10.10 -18.75 -0.19 -4.53 16 16 C 0.11 1.36 5.44 36.00 0.20 1.55 16 17 C -0.09 -0.99 5.51 -104.63 -0.58 -1.57 16 18 C -0.10 -0.93 9.70 -39.58 -0.38 -1.32 16 19 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 20 C -0.11 -0.88 10.05 -39.58 -0.40 -1.28 16 21 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 22 C -0.10 -0.91 9.70 -39.58 -0.38 -1.29 16 23 N -0.54 -8.61 9.22 -13.33 -0.12 -8.74 16 24 C 0.13 2.12 10.85 -17.57 -0.19 1.93 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 27 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 28 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 29 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 33 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 37 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.16 2.27 8.06 -52.48 -0.42 1.84 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -31.71 337.64 -9.20 -40.91 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.41 Total: -0.93 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -4.67 Total: -22.04 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.65 Total: -35.53 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.19 Total: -4.53 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.71 -9.20 -40.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061005.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.566 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds