Wall clock time and date at job start Tue Mar 31 2020 05:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 C 1.38834 * 120.35130 * 90.00037 * 11 10 9 13 13 C 1.38381 * 118.47948 * 179.97438 * 12 11 10 14 14 C 1.38914 * 119.11288 * 0.02562 * 13 12 11 15 15 O 1.35681 * 119.68381 * 179.97438 * 14 13 12 16 16 C 1.42897 * 117.00263 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47238 * 180.02562 * 16 15 14 18 18 C 1.38230 * 119.99956 * 269.72619 * 17 16 15 19 19 C 1.38238 * 120.00116 * 179.76413 * 18 17 16 20 20 C 1.38235 * 119.99749 * 0.50905 * 19 18 17 21 21 C 1.38236 * 120.00071 * 359.74224 * 20 19 18 22 22 C 1.38235 * 119.99831 * 0.02562 * 21 20 19 23 23 N 1.32248 * 120.63427 * 0.02562 * 14 13 12 24 24 C 1.31964 * 121.64280 * 359.68891 * 23 14 13 25 25 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 27 27 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 28 28 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 29 29 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 30 30 H 1.07996 * 120.75617 * 359.95847 * 12 11 10 31 31 H 1.07999 * 120.43602 * 179.97438 * 13 12 11 32 32 H 1.09005 * 109.46736 * 299.99925 * 16 15 14 33 33 H 1.08994 * 109.47181 * 59.99627 * 16 15 14 34 34 H 1.07997 * 120.00199 * 359.97438 * 18 17 16 35 35 H 1.08001 * 119.99824 * 180.22989 * 19 18 17 36 36 H 1.08005 * 120.00089 * 179.72297 * 20 19 18 37 37 H 1.07994 * 120.00102 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.99941 * 179.97438 * 22 21 20 39 39 H 1.08005 * 119.57690 * 180.31048 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5285 -2.6368 -0.0001 12 6 6.2301 -2.6369 1.1979 13 6 7.6131 -2.6375 1.1527 14 6 8.2490 -2.6375 -0.0824 15 8 9.6045 -2.6375 -0.1403 16 6 10.1984 -2.6380 -1.4400 17 6 11.6995 -2.6387 -1.3064 18 6 12.3890 -1.4419 -1.2511 19 6 13.7654 -1.4424 -1.1236 20 6 14.4534 -2.6399 -1.0621 21 6 13.7643 -3.8368 -1.1227 22 6 12.3874 -3.8361 -1.2453 23 7 7.5457 -2.6363 -1.2024 24 6 6.2261 -2.6413 -1.1913 25 1 -0.4849 0.8401 0.0004 26 1 3.8746 -0.6809 0.8905 27 1 3.8752 -0.6798 -0.8895 28 1 3.6584 -3.1503 -0.8903 29 1 3.6578 -3.1508 0.8896 30 1 5.7083 -2.6363 2.1435 31 1 8.1904 -2.6373 2.0654 32 1 9.8820 -3.5283 -1.9837 33 1 9.8821 -1.7483 -1.9843 34 1 11.8520 -0.5064 -1.3039 35 1 14.3037 -0.5073 -1.0766 36 1 15.5292 -2.6404 -0.9671 37 1 14.3018 -4.7722 -1.0751 38 1 11.8492 -4.7712 -1.2931 39 1 5.6851 -2.6452 -2.1261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250061005.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:34 Heat of formation + Delta-G solvation = -8.158655 kcal Electronic energy + Delta-G solvation = -20141.806570 eV Core-core repulsion = 17013.375833 eV Total energy + Delta-G solvation = -3128.430738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.66388 -40.27431 -38.89700 -36.02548 -34.24519 -33.40978 -32.78897 -31.85280 -30.70434 -27.70298 -26.75198 -24.56688 -23.68309 -23.53858 -22.22398 -21.88073 -19.48054 -18.98322 -18.27428 -17.43939 -17.21578 -16.38189 -16.15135 -16.01682 -15.74080 -15.52518 -14.99918 -14.78300 -14.59342 -14.38151 -14.19715 -14.09602 -13.80304 -13.56764 -13.33659 -13.02659 -12.87151 -12.28468 -12.01263 -11.96398 -11.89890 -11.71651 -11.65992 -11.32647 -10.79560 -10.73958 -10.60674 -9.87954 -9.82914 -9.29528 -8.28590 -6.31938 0.18754 0.21844 0.31471 0.44611 1.35654 1.37119 1.48676 2.07317 2.35872 2.78548 2.91054 3.07094 3.36187 3.70829 3.82944 3.94190 4.04573 4.09093 4.10956 4.24818 4.25205 4.32931 4.44222 4.57959 4.61447 4.69837 4.74360 4.83139 4.95907 4.99751 5.08184 5.10220 5.29289 5.41845 5.49286 5.53494 5.55971 5.59198 5.65013 5.67274 6.03432 6.23829 6.29133 6.76388 6.84063 7.32686 8.87899 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.033535 B = 0.002715 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.737133 B =10310.705571 C =10761.269009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.250 1.250 7 C -0.529 4.529 8 H 0.039 0.961 9 C -0.003 4.003 10 C -0.050 4.050 11 C -0.161 4.161 12 C -0.042 4.042 13 C -0.185 4.185 14 C 0.292 3.708 15 O -0.310 6.310 16 C 0.116 3.884 17 C -0.114 4.114 18 C -0.111 4.111 19 C -0.129 4.129 20 C -0.114 4.114 21 C -0.128 4.128 22 C -0.109 4.109 23 N -0.550 5.550 24 C 0.128 3.872 25 H 0.266 0.734 26 H 0.018 0.982 27 H 0.014 0.986 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.126 0.874 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.129 0.871 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.056 -5.964 -1.109 30.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.174 1.174 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.040 4.040 10 C -0.088 4.088 11 C -0.163 4.163 12 C -0.067 4.067 13 C -0.205 4.205 14 C 0.113 3.887 15 O -0.218 6.218 16 C 0.041 3.959 17 C -0.114 4.114 18 C -0.129 4.129 19 C -0.147 4.147 20 C -0.132 4.132 21 C -0.146 4.146 22 C -0.127 4.127 23 N -0.274 5.274 24 C -0.026 4.026 25 H 0.075 0.925 26 H 0.036 0.964 27 H 0.033 0.967 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.177 0.823 31 H 0.178 0.822 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.147 0.853 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 30.575 -5.857 -1.706 31.177 hybrid contribution -1.023 0.782 0.412 1.352 sum 29.552 -5.075 -1.295 30.012 Atomic orbital electron populations 1.70058 1.08158 1.28055 1.52775 1.25953 0.95542 1.03274 0.94349 0.85723 0.79439 0.78792 0.79084 1.19400 1.20984 1.17397 1.21495 0.91920 0.93241 1.50000 0.94297 1.19489 0.93726 0.94390 0.96425 1.20266 0.88305 0.97608 1.02653 1.21020 0.97704 1.03168 0.94402 1.21632 0.92790 0.93072 0.99220 1.21255 0.94620 1.07573 0.97064 1.20028 0.84070 0.94031 0.90547 1.86267 1.15062 1.88211 1.32306 1.21375 0.88996 1.02921 0.82562 1.19670 0.93078 0.94758 1.03886 1.21295 0.95395 0.97478 0.98769 1.21477 0.93699 0.99672 0.99827 1.21611 1.01438 0.92156 0.97955 1.21487 0.93710 0.99635 0.99738 1.21299 0.95347 0.97432 0.98615 1.67307 1.09912 1.19799 1.30366 1.22518 0.87733 0.93659 0.98720 0.92539 0.96407 0.96715 0.91321 0.91223 0.82324 0.82238 0.90956 0.91355 0.85626 0.83716 0.83268 0.83519 0.85282 0.81379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 2 C 0.01 0.33 5.47 84.66 0.46 0.79 16 3 Si 0.95 44.44 27.47 68.60 1.88 46.33 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 7 C -0.53 -29.87 9.66 25.60 0.25 -29.62 16 8 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 9 C 0.00 -0.13 4.02 29.85 0.12 -0.01 16 10 C -0.05 -1.85 5.31 29.85 0.16 -1.69 16 11 C -0.16 -5.10 5.15 -19.77 -0.10 -5.21 16 12 C -0.04 -1.17 9.85 22.45 0.22 -0.95 16 13 C -0.18 -4.90 10.04 22.47 0.23 -4.67 16 14 C 0.29 8.58 7.49 84.79 0.63 9.21 16 15 O -0.31 -8.52 10.10 -89.99 -0.91 -9.43 16 16 C 0.12 2.73 5.44 71.24 0.39 3.12 16 17 C -0.11 -2.34 5.51 -19.87 -0.11 -2.45 16 18 C -0.11 -2.06 9.70 22.27 0.22 -1.84 16 19 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 20 C -0.11 -1.44 10.05 22.27 0.22 -1.22 16 21 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 22 C -0.11 -1.93 9.70 22.27 0.22 -1.71 16 23 N -0.55 -17.02 9.22 -308.95 -2.85 -19.87 16 24 C 0.13 3.97 10.85 84.63 0.92 4.88 16 25 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 26 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 27 H 0.01 0.66 7.57 -2.38 -0.02 0.64 16 28 H 0.07 2.48 8.09 -2.39 -0.02 2.46 16 29 H 0.07 2.50 8.10 -2.39 -0.02 2.48 16 30 H 0.16 3.78 8.06 -2.91 -0.02 3.75 16 31 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 32 H 0.07 1.67 8.05 -2.38 -0.02 1.65 16 33 H 0.07 1.64 8.05 -2.39 -0.02 1.62 16 34 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 36 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 37 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.17 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -68.15 337.64 3.67 -64.48 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.97 Total: 12.00 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 4.27 Total: -34.55 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -2.55 Total: -78.82 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.91 Total: -9.43 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.33 kcal Total: -68.15 3.67 -64.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061005.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.326 kcal (2) G-P(sol) polarization free energy of solvation -68.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds