Wall clock time and date at job start Tue Mar 31 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00168 * 2 1 4 4 H 1.48493 * 109.47204 * 270.00347 * 3 2 1 5 5 H 1.48505 * 109.46908 * 30.00580 * 3 2 1 6 6 H 1.48496 * 109.46732 * 150.00019 * 3 2 1 7 7 C 1.37873 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00233 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00209 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47270 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47002 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.47205 * 179.97438 * 11 10 9 13 13 C 1.38267 * 119.94214 * 89.99327 * 12 11 10 14 14 C 1.38133 * 120.05871 * 180.02562 * 13 12 11 15 15 C 1.38762 * 119.94288 * 359.97438 * 14 13 12 16 16 O 1.35882 * 120.06006 * 179.97438 * 15 14 13 17 17 C 1.35895 * 117.99853 * 186.10516 * 16 15 14 18 18 C 1.39161 * 120.47696 * 67.39653 * 17 16 15 19 19 C 1.38522 * 118.37362 * 180.02562 * 18 17 16 20 20 C 1.38258 * 119.22397 * 0.02562 * 19 18 17 21 21 N 1.31853 * 120.89296 * 359.72284 * 20 19 18 22 22 C 1.31837 * 121.77686 * 0.56724 * 21 20 19 23 23 C 1.38760 * 119.87958 * 0.27049 * 15 14 13 24 24 C 1.38140 * 119.94227 * 359.49432 * 23 15 14 25 25 H 0.96999 * 119.99863 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46756 * 59.99439 * 9 7 2 27 27 H 1.08999 * 109.47083 * 300.00066 * 9 7 2 28 28 H 1.08996 * 109.47827 * 59.99716 * 10 9 7 29 29 H 1.09003 * 109.47078 * 299.99291 * 10 9 7 30 30 H 1.08993 * 109.47581 * 59.99529 * 11 10 9 31 31 H 1.09008 * 109.46779 * 299.99519 * 11 10 9 32 32 H 1.08001 * 119.97429 * 0.02562 * 13 12 11 33 33 H 1.08004 * 120.02832 * 179.97438 * 14 13 12 34 34 H 1.07997 * 120.81269 * 0.04794 * 18 17 16 35 35 H 1.08008 * 120.39315 * 180.02562 * 19 18 17 36 36 H 1.08008 * 119.55700 * 179.97438 * 20 19 18 37 37 H 1.08002 * 119.65790 * 179.71006 * 22 21 20 38 38 H 1.07997 * 120.02978 * 179.72339 * 23 15 14 39 39 H 1.08001 * 119.97093 * 180.22874 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 6 6.0537 -4.0576 -0.0002 13 6 6.2837 -4.7089 -1.1980 14 6 6.7436 -6.0114 -1.2001 15 6 6.9753 -6.6660 0.0013 16 8 7.4273 -7.9475 0.0020 17 6 7.5197 -8.5907 1.1955 18 6 6.3724 -8.9147 1.9134 19 6 6.5172 -9.5699 3.1252 20 6 7.7866 -9.8776 3.5787 21 7 8.8534 -9.5609 2.8716 22 6 8.7592 -8.9325 1.7165 23 6 6.7389 -6.0118 1.2019 24 6 6.2836 -4.7075 1.1984 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.8745 -0.6802 -0.8911 28 1 3.6577 -3.1507 -0.8906 29 1 3.6584 -3.1502 0.8893 30 1 5.9148 -2.1228 0.8889 31 1 5.9148 -2.1230 -0.8911 32 1 6.1035 -4.1989 -2.1328 33 1 6.9226 -6.5199 -2.1360 34 1 5.3931 -8.6618 1.5348 35 1 5.6488 -9.8372 3.7091 36 1 7.9057 -10.3880 4.5231 37 1 9.6561 -8.6854 1.1678 38 1 6.9142 -6.5205 2.1383 39 1 6.1030 -4.1966 2.1326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:50 Heat of formation + Delta-G solvation = 16.312585 kcal Electronic energy + Delta-G solvation = -20317.453406 eV Core-core repulsion = 17190.083821 eV Total energy + Delta-G solvation = -3127.369585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.41137 -39.68571 -38.10180 -34.68685 -32.76845 -32.49406 -31.35754 -30.81033 -30.00670 -26.97138 -24.35113 -24.14904 -23.21351 -22.55936 -21.06604 -20.04763 -18.92244 -17.55714 -17.23571 -16.79662 -16.63918 -15.43057 -15.00310 -14.64277 -14.42686 -14.25549 -14.10714 -13.87885 -13.60047 -13.46458 -13.37453 -12.98852 -12.58165 -12.29065 -11.74719 -11.63041 -11.53635 -11.09759 -10.90640 -10.69877 -10.25609 -9.98228 -9.91767 -9.72178 -9.65671 -9.35833 -9.18299 -9.04176 -8.53744 -8.08665 -6.04148 -4.02046 0.47511 0.74232 1.30165 1.36554 2.78058 3.30366 3.37781 3.39090 3.41369 3.70908 4.05938 4.31872 4.44341 4.45155 4.62084 4.72161 4.78801 4.86574 5.04342 5.19332 5.29396 5.31445 5.38508 5.55249 5.61054 5.65263 5.71115 5.91460 5.99659 6.02951 6.16686 6.25343 6.32898 6.43642 6.68678 6.77629 6.79450 6.91965 7.27366 7.31892 7.44078 7.48628 7.80136 8.54739 9.01148 9.58502 11.09466 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.030290 B = 0.002746 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.175158 B =10192.476370 C =10574.560575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.095 4.095 11 C -0.085 4.085 12 C -0.091 4.091 13 C -0.082 4.082 14 C -0.137 4.137 15 C 0.099 3.901 16 O -0.255 6.255 17 C 0.044 3.956 18 C -0.096 4.096 19 C -0.154 4.154 20 C 0.092 3.908 21 N -0.466 5.466 22 C 0.098 3.902 23 C -0.191 4.191 24 C -0.081 4.081 25 H 0.263 0.737 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.121 0.879 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.293 -18.085 3.819 25.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.133 4.133 11 C -0.123 4.123 12 C -0.091 4.091 13 C -0.100 4.100 14 C -0.156 4.156 15 C 0.057 3.943 16 O -0.166 6.166 17 C 0.000 4.000 18 C -0.122 4.122 19 C -0.174 4.174 20 C -0.065 4.065 21 N -0.176 5.176 22 C -0.060 4.060 23 C -0.209 4.209 24 C -0.099 4.099 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.029 0.971 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.179 0.821 37 H 0.181 0.819 38 H 0.139 0.861 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 18.007 -18.274 3.953 25.958 hybrid contribution -0.708 1.079 -0.178 1.302 sum 17.300 -17.196 3.776 24.682 Atomic orbital electron populations 1.69921 1.06323 1.26851 1.51323 1.25052 0.94739 0.99211 0.94627 0.86762 0.80353 0.83583 0.78491 1.20310 1.21439 1.18991 1.21167 0.89617 0.94415 1.50598 0.91121 1.19601 0.97081 0.92344 0.96207 1.21457 0.90767 0.99759 1.01320 1.20797 0.98132 0.90813 1.02516 1.20141 0.98702 0.97623 0.92649 1.20943 0.97348 0.93277 0.98401 1.20382 1.04197 0.95242 0.95769 1.19058 0.98175 0.82366 0.94712 1.84354 1.80914 1.24128 1.27211 1.19816 0.94394 0.98355 0.87484 1.22077 0.99353 0.96301 0.94510 1.22158 0.99604 0.99293 0.96351 1.22901 0.87929 0.96513 0.99197 1.67805 1.33413 1.10711 1.05657 1.22946 0.96248 0.95385 0.91377 1.21191 1.06465 0.96774 0.96504 1.20899 0.97250 0.93456 0.98302 0.92773 0.96665 0.97052 0.92694 0.92786 0.91408 0.91291 0.84926 0.85158 0.83859 0.83914 0.82068 0.81878 0.86084 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.09 13.96 55.43 0.77 -27.31 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C -0.02 -0.35 4.04 -27.89 -0.11 -0.47 16 10 C -0.10 -1.85 5.14 -26.73 -0.14 -1.99 16 11 C -0.09 -1.32 5.34 -27.88 -0.15 -1.47 16 12 C -0.09 -1.28 5.14 -104.60 -0.54 -1.81 16 13 C -0.08 -1.05 9.69 -39.61 -0.38 -1.43 16 14 C -0.14 -1.67 9.99 -39.43 -0.39 -2.06 16 15 C 0.10 1.23 6.55 -39.19 -0.26 0.98 16 16 O -0.25 -3.03 10.02 -3.55 -0.04 -3.06 16 17 C 0.04 0.46 4.75 -39.06 -0.19 0.28 16 18 C -0.10 -0.87 8.51 -39.13 -0.33 -1.20 16 19 C -0.15 -1.11 10.11 -39.47 -0.40 -1.51 16 20 C 0.09 0.70 11.18 -17.54 -0.20 0.50 16 21 N -0.47 -4.60 10.36 -13.12 -0.14 -4.73 16 22 C 0.10 0.96 11.14 -17.37 -0.19 0.77 16 23 C -0.19 -2.36 8.80 -39.42 -0.35 -2.71 16 24 C -0.08 -1.07 9.69 -39.61 -0.38 -1.45 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 27 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 31 H 0.07 1.01 8.09 -51.92 -0.42 0.59 16 32 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 33 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 36 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 37 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.12 1.38 6.18 -52.49 -0.32 1.05 16 39 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 333.85 15.07 5.03 5.03 Total: -1.00 -32.27 333.85 -8.80 -41.07 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.32 Total: -1.04 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -4.44 Total: -27.02 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.64 Total: -32.05 kcal Atomic # 8 Polarization: -3.03 SS G_CDS: -0.04 Total: -3.06 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.27 -8.80 -41.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.382 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds