Wall clock time and date at job start Tue Mar 31 2020 05:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99866 * 2 1 4 4 H 1.48498 * 109.47396 * 270.00225 * 3 2 1 5 5 H 1.48507 * 109.47062 * 29.99964 * 3 2 1 6 6 H 1.48494 * 109.47208 * 149.99763 * 3 2 1 7 7 C 1.37875 * 120.00500 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99608 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00254 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47046 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46975 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47067 * 179.97438 * 11 10 9 13 13 C 1.38830 * 120.35887 * 270.02510 * 12 11 10 14 14 C 1.38376 * 118.48846 * 179.70972 * 13 12 11 15 15 C 1.38932 * 119.11076 * 0.50537 * 14 13 12 16 16 O 1.35678 * 119.68717 * 179.75586 * 15 14 13 17 17 C 1.35888 * 117.99694 * 185.75461 * 16 15 14 18 18 C 1.38753 * 120.05900 * 250.85549 * 17 16 15 19 19 C 1.38138 * 119.94350 * 179.77150 * 18 17 16 20 20 C 1.38271 * 120.05822 * 0.51590 * 19 18 17 21 21 C 1.38271 * 120.11163 * 359.74041 * 20 19 18 22 22 C 1.38133 * 120.05805 * 0.02562 * 21 20 19 23 23 N 1.32265 * 120.62814 * 359.48210 * 15 14 13 24 24 C 1.31957 * 121.64622 * 0.27480 * 23 15 14 25 25 H 0.96999 * 119.99994 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46731 * 60.00463 * 9 7 2 27 27 H 1.08996 * 109.47047 * 300.00399 * 9 7 2 28 28 H 1.09001 * 109.47039 * 60.00044 * 10 9 7 29 29 H 1.09005 * 109.46817 * 300.00280 * 10 9 7 30 30 H 1.09001 * 109.47442 * 59.99996 * 11 10 9 31 31 H 1.08999 * 109.47320 * 300.00110 * 11 10 9 32 32 H 1.08007 * 120.75474 * 359.97225 * 13 12 11 33 33 H 1.08002 * 120.44567 * 180.26474 * 14 13 12 34 34 H 1.08006 * 120.02546 * 0.03739 * 18 17 16 35 35 H 1.08004 * 119.97009 * 180.23817 * 19 18 17 36 36 H 1.07992 * 119.94240 * 179.72841 * 20 19 18 37 37 H 1.08005 * 119.96951 * 180.02562 * 21 20 19 38 38 H 1.08007 * 120.02510 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.58253 * 179.97438 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 0.0001 11 6 5.5516 -2.6363 0.0001 12 6 6.0540 -4.0571 0.0009 13 6 6.2874 -4.7182 1.1992 14 6 6.7427 -6.0241 1.1547 15 6 6.9597 -6.6226 -0.0802 16 8 7.4108 -7.9009 -0.1374 17 6 7.7247 -8.4126 -1.3565 18 6 6.9196 -9.3864 -1.9298 19 6 7.2384 -9.9016 -3.1712 20 6 8.3646 -9.4553 -3.8378 21 6 9.1715 -8.4888 -3.2664 22 6 8.8545 -7.9670 -2.0273 23 7 6.7257 -5.9598 -1.2006 24 6 6.2867 -4.7155 -1.1901 25 1 -0.4850 0.8400 -0.0004 26 1 3.8752 -0.6795 0.8895 27 1 3.8746 -0.6806 -0.8905 28 1 3.6580 -3.1504 -0.8897 29 1 3.6586 -3.1500 0.8903 30 1 5.9149 -2.1224 0.8901 31 1 5.9150 -2.1225 -0.8898 32 1 6.1135 -4.2258 2.1446 33 1 6.9305 -6.5696 2.0677 34 1 6.0420 -9.7383 -1.4077 35 1 6.6098 -10.6568 -3.6196 36 1 8.6144 -9.8625 -4.8064 37 1 10.0505 -8.1416 -3.7893 38 1 9.4855 -7.2123 -1.5812 39 1 6.1071 -4.2056 -2.1251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065327.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:31 Heat of formation + Delta-G solvation = 16.355609 kcal Electronic energy + Delta-G solvation = -20313.634813 eV Core-core repulsion = 17186.267093 eV Total energy + Delta-G solvation = -3127.367720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.13535 -39.53322 -37.74908 -35.04241 -32.83650 -32.17211 -31.23156 -30.89024 -29.83013 -27.13142 -24.33175 -23.86061 -22.94268 -22.33643 -21.37952 -20.09326 -19.05035 -17.46966 -16.72039 -16.67682 -16.27273 -15.38078 -15.16810 -14.54838 -14.32257 -14.29163 -14.10789 -13.87177 -13.69660 -13.13778 -12.97411 -12.74567 -12.48099 -12.03322 -11.95929 -11.87516 -11.58056 -11.16414 -10.95168 -10.79251 -10.00272 -9.91380 -9.83518 -9.64679 -9.49206 -9.21104 -9.19762 -8.97119 -8.54173 -8.30262 -6.04352 -4.02511 0.88493 1.11389 1.15302 1.28077 2.84944 3.30118 3.37611 3.40658 3.65300 3.75421 4.28332 4.44699 4.65634 4.66096 4.82185 4.86970 4.96640 5.01599 5.11545 5.12967 5.27651 5.29533 5.45974 5.59357 5.72207 5.78991 5.84294 5.93008 6.09108 6.13953 6.17267 6.22843 6.25136 6.42671 6.59901 6.63861 6.66627 6.88534 7.29470 7.34591 7.41939 7.79308 7.84886 8.54130 9.00943 9.58031 11.09243 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.029737 B = 0.002746 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.374864 B =10192.405440 C =10415.180030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.097 4.097 11 C -0.079 4.079 12 C -0.146 4.146 13 C -0.043 4.043 14 C -0.180 4.180 15 C 0.296 3.704 16 O -0.254 6.254 17 C 0.103 3.897 18 C -0.119 4.119 19 C -0.107 4.107 20 C -0.123 4.123 21 C -0.107 4.107 22 C -0.119 4.119 23 N -0.524 5.524 24 C 0.137 3.863 25 H 0.263 0.737 26 H 0.016 0.984 27 H 0.012 0.988 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.626 -17.035 -3.256 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.134 4.134 11 C -0.117 4.117 12 C -0.148 4.148 13 C -0.069 4.069 14 C -0.200 4.200 15 C 0.120 3.880 16 O -0.161 6.161 17 C 0.061 3.939 18 C -0.137 4.137 19 C -0.125 4.125 20 C -0.141 4.141 21 C -0.125 4.125 22 C -0.137 4.137 23 N -0.246 5.246 24 C -0.019 4.019 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 19.660 -17.520 -3.832 26.611 hybrid contribution 0.101 1.342 0.635 1.488 sum 19.761 -16.179 -3.196 25.738 Atomic orbital electron populations 1.69920 1.06335 1.26868 1.51241 1.25053 0.94736 0.99215 0.94611 0.86762 0.80336 0.83585 0.78489 1.20310 1.21444 1.18985 1.21161 0.89601 0.94432 1.50686 0.91120 1.19593 0.97111 0.92211 0.96256 1.21479 0.90615 0.99918 1.01407 1.20708 0.98154 0.89980 1.02824 1.21049 1.00933 0.99231 0.93564 1.21385 0.93836 0.92676 0.98964 1.21010 1.06599 0.96014 0.96374 1.19847 0.93648 0.84230 0.90325 1.84569 1.78520 1.24793 1.28184 1.18535 0.94264 0.95785 0.85356 1.21158 0.98911 0.98411 0.95257 1.21010 0.97336 1.00025 0.94129 1.21200 0.95231 0.97527 1.00129 1.21000 0.99898 0.96850 0.94754 1.21295 0.96826 1.00164 0.95428 1.67317 1.17094 1.10554 1.29594 1.22369 0.93005 0.88294 0.98244 0.92757 0.96604 0.97006 0.92676 0.92704 0.91104 0.91031 0.83860 0.84214 0.85351 0.85359 0.85710 0.85581 0.85913 0.82281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.52 -14.83 9.66 -34.44 -0.33 -15.17 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 10 C -0.10 -1.83 5.13 -26.73 -0.14 -1.97 16 11 C -0.08 -1.16 5.37 -27.89 -0.15 -1.31 16 12 C -0.15 -1.99 5.15 -104.47 -0.54 -2.53 16 13 C -0.04 -0.53 9.85 -39.31 -0.39 -0.92 16 14 C -0.18 -2.21 10.04 -39.27 -0.39 -2.60 16 15 C 0.30 4.15 7.33 -17.11 -0.13 4.02 16 16 O -0.25 -3.46 9.97 -2.89 -0.03 -3.48 16 17 C 0.10 1.29 5.22 -39.20 -0.20 1.08 16 18 C -0.12 -1.31 9.99 -39.43 -0.39 -1.71 16 19 C -0.11 -0.97 10.04 -39.61 -0.40 -1.37 16 20 C -0.12 -1.04 10.04 -39.56 -0.40 -1.44 16 21 C -0.11 -0.98 10.04 -39.61 -0.40 -1.38 16 22 C -0.12 -1.33 9.47 -39.43 -0.37 -1.70 16 23 N -0.52 -7.70 9.06 -13.32 -0.12 -7.82 16 24 C 0.14 1.90 10.85 -17.56 -0.19 1.71 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 27 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 31 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 32 H 0.14 1.49 8.06 -52.48 -0.42 1.06 16 33 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 35 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 36 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.16 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 336.92 15.07 5.08 5.08 Total: -1.00 -32.38 336.92 -9.02 -41.40 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.42 Total: -0.89 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -4.63 Total: -23.94 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.65 Total: -35.08 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: -0.03 Total: -3.48 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.38 -9.02 -41.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065327.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.755 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds