Wall clock time and date at job start Tue Mar 31 2020 05:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99733 * 2 1 4 4 H 1.48506 * 109.47322 * 269.99974 * 3 2 1 5 5 H 1.48498 * 109.47426 * 30.00129 * 3 2 1 6 6 H 1.48499 * 109.47559 * 150.00190 * 3 2 1 7 7 C 1.37870 * 120.00423 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50710 * 120.00231 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.46845 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46659 * 180.02562 * 10 9 7 12 12 C 1.50705 * 109.47096 * 180.02562 * 11 10 9 13 13 C 1.38258 * 120.38635 * 269.72546 * 12 11 10 14 14 N 1.31857 * 120.88857 * 179.67888 * 13 12 11 15 15 C 1.31836 * 121.78483 * 0.63020 * 14 13 12 16 16 C 1.38732 * 120.67545 * 359.66164 * 15 14 13 17 17 O 1.35905 * 120.47239 * 180.02562 * 16 15 14 18 18 C 1.35884 * 117.99721 * 0.50914 * 17 16 15 19 19 C 1.38762 * 120.05792 * 269.73726 * 18 17 16 20 20 C 1.38132 * 119.94117 * 179.77314 * 19 18 17 21 21 C 1.38270 * 120.05552 * 0.50947 * 20 19 18 22 22 C 1.38266 * 120.11795 * 359.74321 * 21 20 19 23 23 C 1.38131 * 120.05879 * 0.02562 * 22 21 20 24 24 C 1.38533 * 120.38836 * 90.00133 * 12 11 10 25 25 H 0.96994 * 120.00309 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47054 * 300.00467 * 9 7 2 27 27 H 1.09003 * 109.46789 * 60.00154 * 9 7 2 28 28 H 1.08995 * 109.47858 * 300.00197 * 10 9 7 29 29 H 1.09003 * 109.47119 * 60.00580 * 10 9 7 30 30 H 1.08996 * 109.47161 * 300.00065 * 11 10 9 31 31 H 1.08995 * 109.47120 * 60.00652 * 11 10 9 32 32 H 1.08003 * 119.55826 * 359.97438 * 13 12 11 33 33 H 1.07993 * 119.66533 * 179.68224 * 15 14 13 34 34 H 1.08003 * 120.02365 * 0.02562 * 19 18 17 35 35 H 1.08000 * 119.96819 * 180.25595 * 20 19 18 36 36 H 1.08011 * 119.93826 * 179.72717 * 21 20 19 37 37 H 1.08005 * 119.96851 * 180.02562 * 22 21 20 38 38 H 1.07999 * 120.02618 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.81010 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5117 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5517 -2.6363 -0.0009 12 6 6.0541 -4.0571 -0.0015 13 6 6.2926 -4.7150 1.1910 14 7 6.7263 -5.9601 1.2021 15 6 6.9615 -6.6235 0.0874 16 6 6.7514 -6.0285 -1.1481 17 8 6.9947 -6.7164 -2.2947 18 6 7.4361 -7.9972 -2.1887 19 6 8.7973 -8.2610 -2.1340 20 6 9.2432 -9.5635 -2.0215 21 6 8.3348 -10.6048 -1.9740 22 6 6.9780 -10.3451 -2.0336 23 6 6.5267 -9.0441 -2.1413 24 6 6.2878 -4.7173 -1.1967 25 1 -0.4850 0.8400 0.0004 26 1 3.8746 -0.6798 -0.8910 27 1 3.8753 -0.6802 0.8889 28 1 3.6587 -3.1501 0.8891 29 1 3.6580 -3.1504 -0.8908 30 1 5.9150 -2.1225 -0.8909 31 1 5.9149 -2.1225 0.8890 32 1 6.1169 -4.2037 2.1259 33 1 7.3211 -7.6407 0.1364 34 1 9.5074 -7.4482 -2.1753 35 1 10.3025 -9.7690 -1.9748 36 1 8.6857 -11.6229 -1.8905 37 1 6.2705 -11.1603 -1.9959 38 1 5.4668 -8.8418 -2.1882 39 1 6.1140 -4.2265 -2.1429 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065949.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:36 Heat of formation + Delta-G solvation = 15.774594 kcal Electronic energy + Delta-G solvation = -20348.629643 eV Core-core repulsion = 17221.236729 eV Total energy + Delta-G solvation = -3127.392914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28493 -39.64157 -37.90946 -35.24934 -32.94099 -31.81918 -31.41536 -30.74525 -29.83015 -27.42182 -24.30291 -23.71738 -23.13619 -22.90806 -21.20720 -20.11820 -18.65712 -17.34904 -16.83979 -16.70121 -16.61960 -16.34542 -15.30178 -14.43828 -14.34970 -14.26384 -13.93282 -13.87542 -13.61334 -13.13188 -12.99773 -12.76982 -12.66361 -12.30838 -12.12703 -11.97804 -11.58450 -11.33866 -11.08760 -10.77333 -10.09715 -9.91224 -9.74050 -9.55443 -9.43473 -9.27863 -9.14888 -9.04295 -8.53676 -8.48665 -6.03754 -4.01971 0.67648 0.90743 1.09018 1.25509 2.79389 3.30799 3.38346 3.41451 3.41569 3.75281 4.45144 4.45364 4.49120 4.49244 4.62382 4.68956 4.86033 4.93951 4.99102 5.08363 5.08977 5.28947 5.31829 5.44670 5.54917 5.76311 5.82945 5.87663 5.93125 5.98121 6.04683 6.12372 6.20718 6.31613 6.56888 6.60631 6.64055 6.87874 7.27315 7.29377 7.41751 7.79542 7.92929 8.54508 9.01427 9.58538 11.09824 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.035154 B = 0.002732 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.299698 B =10247.246146 C =10470.097164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.096 4.096 11 C -0.084 4.084 12 C -0.076 4.076 13 C 0.067 3.933 14 N -0.450 5.450 15 C 0.017 3.983 16 C 0.072 3.928 17 O -0.256 6.256 18 C 0.081 3.919 19 C -0.126 4.126 20 C -0.107 4.107 21 C -0.118 4.118 22 C -0.106 4.106 23 C -0.124 4.124 24 C -0.103 4.103 25 H 0.263 0.737 26 H 0.012 0.988 27 H 0.017 0.983 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.160 0.840 33 H 0.152 0.848 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.743 -19.054 -3.681 27.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.134 4.134 11 C -0.122 4.122 12 C -0.078 4.078 13 C -0.091 4.091 14 N -0.158 5.158 15 C -0.141 4.141 16 C 0.027 3.973 17 O -0.167 6.167 18 C 0.039 3.961 19 C -0.144 4.144 20 C -0.125 4.125 21 C -0.136 4.136 22 C -0.124 4.124 23 C -0.143 4.143 24 C -0.129 4.129 25 H 0.072 0.928 26 H 0.030 0.970 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.177 0.823 33 H 0.169 0.831 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 19.705 -19.285 -3.081 27.743 hybrid contribution 0.145 1.179 -0.854 1.463 sum 19.850 -18.106 -3.936 27.154 Atomic orbital electron populations 1.69916 1.06330 1.26875 1.51220 1.25047 0.94741 0.99213 0.94604 0.86764 0.80362 0.83586 0.78474 1.20334 1.21428 1.18952 1.21153 0.89557 0.94454 1.50714 0.91094 1.19595 0.97153 0.92081 0.96325 1.21476 0.90225 1.00116 1.01569 1.20825 0.98458 0.89708 1.03218 1.21024 0.95795 0.98439 0.92572 1.22686 0.97859 0.90445 0.98097 1.67541 1.09815 1.08563 1.29894 1.22798 1.03533 1.00698 0.87081 1.20190 0.98645 0.92676 0.85750 1.84364 1.80724 1.23137 1.28463 1.18694 0.92086 0.82743 1.02566 1.21442 0.94622 0.98042 1.00303 1.21082 1.00185 0.91831 0.99424 1.21295 0.93248 0.99526 0.99541 1.21104 0.96000 0.96084 0.99204 1.21489 1.00372 0.92474 0.99928 1.20863 1.00626 0.91551 0.99881 0.92752 0.96990 0.96489 0.92461 0.92625 0.90807 0.90499 0.82263 0.83089 0.85087 0.85171 0.85404 0.85087 0.84911 0.83801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -14.87 9.66 -34.44 -0.33 -15.21 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -1.84 5.14 -26.73 -0.14 -1.98 16 11 C -0.08 -1.26 5.37 -27.88 -0.15 -1.41 16 12 C -0.08 -1.09 5.15 -104.50 -0.54 -1.63 16 13 C 0.07 0.95 10.86 -17.53 -0.19 0.76 16 14 N -0.45 -6.67 10.36 -13.12 -0.14 -6.80 16 15 C 0.02 0.23 10.37 -17.37 -0.18 0.05 16 16 C 0.07 0.98 6.69 -39.06 -0.26 0.71 16 17 O -0.26 -3.29 9.99 -3.58 -0.04 -3.33 16 18 C 0.08 0.87 3.98 -39.20 -0.16 0.72 16 19 C -0.13 -1.13 9.90 -39.43 -0.39 -1.52 16 20 C -0.11 -0.76 10.04 -39.61 -0.40 -1.15 16 21 C -0.12 -0.78 10.04 -39.56 -0.40 -1.18 16 22 C -0.11 -0.78 10.04 -39.61 -0.40 -1.18 16 23 C -0.12 -1.18 9.93 -39.43 -0.39 -1.57 16 24 C -0.10 -1.43 9.81 -39.13 -0.38 -1.81 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 27 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 31 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 32 H 0.16 1.98 8.06 -52.48 -0.42 1.56 16 33 H 0.15 1.83 6.71 -52.49 -0.35 1.48 16 34 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 37 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 38 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 335.67 15.07 5.06 5.06 Total: -1.00 -32.30 335.67 -8.87 -41.18 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -5.35 Total: -0.75 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -4.51 Total: -25.04 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.64 Total: -34.11 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: -0.04 Total: -3.33 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.30 -8.87 -41.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065949.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.952 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds