Wall clock time and date at job start Tue Mar 31 2020 05:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86801 * 119.99961 * 2 1 4 4 H 1.48497 * 109.46961 * 275.39682 * 3 2 1 5 5 H 1.48509 * 109.46827 * 35.39421 * 3 2 1 6 6 H 1.48500 * 109.47232 * 155.39260 * 3 2 1 7 7 C 1.39926 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99786 * 342.11407 * 7 2 1 9 9 C 1.41045 * 120.00552 * 162.10141 * 7 2 1 10 10 C 1.40726 * 120.30387 * 329.87033 * 9 7 2 11 11 C 1.36454 * 119.94941 * 180.26933 * 10 9 7 12 12 C 1.38902 * 120.59507 * 359.72604 * 11 10 9 13 13 C 1.38158 * 120.62498 * 359.97438 * 12 11 10 14 14 C 1.38747 * 120.03286 * 0.02562 * 13 12 11 15 15 N 1.38732 * 120.30012 * 180.02562 * 14 13 12 16 16 C 1.46494 * 119.99701 * 359.73150 * 15 14 13 17 17 C 1.52999 * 109.47340 * 180.27306 * 16 15 14 18 18 H 1.09001 * 109.46803 * 59.99584 * 17 16 15 19 19 O 1.42906 * 109.47187 * 300.00106 * 17 16 15 20 20 C 1.50696 * 109.47403 * 180.02562 * 17 16 15 21 21 C 1.38233 * 120.00239 * 84.72620 * 20 17 16 22 22 C 1.38238 * 119.99980 * 179.81086 * 21 20 17 23 23 C 1.38245 * 119.99898 * 0.39347 * 22 21 20 24 24 C 1.38236 * 120.00016 * 359.85909 * 23 22 21 25 25 C 1.38242 * 119.99517 * 264.99591 * 20 17 16 26 26 H 0.96999 * 120.00674 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.03079 * 359.97438 * 10 9 7 28 28 H 1.08004 * 119.70142 * 179.73718 * 11 10 9 29 29 H 1.08001 * 119.68524 * 180.02562 * 12 11 10 30 30 H 1.08011 * 119.98348 * 179.97438 * 13 12 11 31 31 H 0.96999 * 119.99896 * 180.02562 * 15 14 13 32 32 H 1.09003 * 109.47300 * 300.27226 * 16 15 14 33 33 H 1.09001 * 109.47512 * 60.27324 * 16 15 14 34 34 H 0.96707 * 113.99530 * 300.00185 * 19 17 16 35 35 H 1.07994 * 119.99875 * 359.97438 * 21 20 17 36 36 H 1.07994 * 120.00139 * 180.23191 * 22 21 20 37 37 H 1.07996 * 119.99897 * 179.83301 * 23 22 21 38 38 H 1.07990 * 119.99911 * 179.97438 * 24 23 22 39 39 H 1.08001 * 120.00331 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3762 2.1122 -1.3938 5 1 1.5017 2.6171 0.8110 6 1 3.5926 1.4100 0.5830 7 6 2.0085 -1.2117 0.0005 8 1 1.5077 -2.1244 0.2882 9 6 3.3678 -1.2415 -0.3748 10 6 3.8677 -0.3124 -1.3061 11 6 5.1828 -0.3512 -1.6682 12 6 6.0390 -1.2983 -1.1212 13 6 5.5753 -2.2179 -0.2004 14 6 4.2429 -2.2020 0.1864 15 7 3.7714 -3.1225 1.1111 16 6 4.6803 -4.1210 1.6794 17 6 3.9125 -5.0105 2.6593 18 1 3.1017 -5.5147 2.1335 19 8 3.3717 -4.2062 3.7094 20 6 4.8476 -6.0373 3.2443 21 6 5.6256 -5.7181 4.3415 22 6 6.4805 -6.6612 4.8805 23 6 6.5634 -7.9210 4.3174 24 6 5.7893 -8.2386 3.2170 25 6 4.9315 -7.2966 2.6803 26 1 -0.4851 0.8400 0.0004 27 1 3.2102 0.4278 -1.7375 28 1 5.5613 0.3610 -2.3865 29 1 7.0773 -1.3155 -1.4181 30 1 6.2501 -2.9502 0.2181 31 1 2.8390 -3.1076 1.3781 32 1 5.0928 -4.7345 0.8784 33 1 5.4912 -3.6168 2.2052 34 1 4.0382 -3.7272 4.2209 35 1 5.5635 -4.7327 4.7791 36 1 7.0855 -6.4131 5.7400 37 1 7.2333 -8.6570 4.7369 38 1 5.8544 -9.2225 2.7769 39 1 4.3266 -7.5447 1.8207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251998293.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:08 Heat of formation + Delta-G solvation = -4.726235 kcal Electronic energy + Delta-G solvation = -21164.967696 eV Core-core repulsion = 18036.685799 eV Total energy + Delta-G solvation = -3128.281897 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.82292 -38.23117 -37.00772 -34.19453 -33.45117 -31.83463 -31.01980 -30.37209 -28.99007 -26.72381 -24.79261 -23.57088 -22.73318 -21.44043 -20.64144 -20.02513 -17.72724 -17.30120 -16.56968 -16.09420 -15.89333 -15.24364 -14.76620 -14.64603 -14.35828 -13.78616 -13.77953 -13.54931 -13.18992 -12.85723 -12.75844 -12.60589 -12.34268 -11.90626 -11.84098 -11.50973 -11.30884 -11.08880 -10.82010 -10.68898 -10.29126 -10.11828 -9.67530 -9.59429 -9.10853 -9.04825 -8.98639 -8.89156 -7.55841 -6.80244 -6.45232 -4.21218 1.14188 1.22266 2.71969 2.87651 3.20695 3.31496 3.42254 3.56647 4.10096 4.17527 4.45648 4.65143 4.68382 4.78488 4.84719 4.97162 5.07358 5.20077 5.34240 5.41629 5.53541 5.77154 5.81875 5.88447 6.01979 6.09166 6.20719 6.26632 6.32251 6.41325 6.44886 6.72629 6.80122 6.94222 7.15741 7.31085 7.49947 7.61149 7.71775 7.97015 8.12701 8.25145 8.49098 8.80212 8.87047 8.99424 10.23308 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.023283 B = 0.004086 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.329106 B = 6851.413490 C = 7507.271461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.085 3.915 3 Si 0.910 3.090 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.246 1.246 7 C -0.452 4.452 8 H 0.086 0.914 9 C 0.052 3.948 10 C -0.213 4.213 11 C -0.125 4.125 12 C -0.196 4.196 13 C -0.173 4.173 14 C 0.131 3.869 15 N -0.741 5.741 16 C 0.112 3.888 17 C 0.137 3.863 18 H 0.112 0.888 19 O -0.546 6.546 20 C -0.108 4.108 21 C -0.110 4.110 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.109 4.109 26 H 0.282 0.718 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.404 0.596 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.373 0.627 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.233 -11.538 7.832 17.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.131 4.131 3 Si 0.737 3.263 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.169 1.169 7 C -0.482 4.482 8 H 0.104 0.896 9 C 0.047 3.953 10 C -0.233 4.233 11 C -0.145 4.145 12 C -0.216 4.216 13 C -0.197 4.197 14 C 0.030 3.970 15 N -0.376 5.376 16 C -0.015 4.015 17 C 0.077 3.923 18 H 0.130 0.870 19 O -0.352 6.352 20 C -0.108 4.108 21 C -0.128 4.128 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.137 4.137 25 C -0.127 4.127 26 H 0.092 0.908 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.241 0.759 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.221 0.779 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.533 -11.789 7.674 16.993 hybrid contribution 0.564 0.929 0.209 1.106 sum 10.097 -10.861 7.883 16.794 Atomic orbital electron populations 1.69716 1.07940 1.29808 1.37106 1.26022 0.94615 1.01336 0.91168 0.86325 0.81236 0.80153 0.78570 1.19967 1.22282 1.16912 1.19077 0.92986 0.95735 1.40354 0.89637 1.17374 0.92887 0.92327 0.92745 1.20512 0.95682 1.04145 1.02983 1.20164 0.94207 0.99172 1.00971 1.20133 0.97722 1.00107 1.03626 1.20109 0.93743 1.02329 1.03536 1.17836 0.92067 0.94071 0.92978 1.43895 1.11792 1.34184 1.47696 1.21671 0.93141 0.90888 0.95752 1.21062 0.94900 0.88914 0.87405 0.87031 1.86667 1.37482 1.63607 1.47411 1.20526 0.98029 0.95659 0.96630 1.20914 0.96078 0.99627 0.96199 1.21116 0.98826 0.93679 0.99994 1.21167 0.99552 0.96800 0.96638 1.21147 0.96578 0.99391 0.96593 1.21047 0.98981 0.92807 0.99837 0.90824 0.88361 0.89379 0.89225 0.89042 0.75908 0.92570 0.93206 0.77876 0.86056 0.86004 0.86168 0.85976 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.38 13.93 55.55 0.77 -21.61 16 2 C 0.09 2.29 5.41 -17.33 -0.09 2.19 16 3 Si 0.91 21.56 24.52 -169.99 -4.17 17.40 16 4 H -0.27 -6.33 6.71 56.52 0.38 -5.95 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.25 -6.00 6.85 56.52 0.39 -5.61 16 7 C -0.45 -12.21 8.91 -37.89 -0.34 -12.55 16 8 H 0.09 2.39 7.04 -52.48 -0.37 2.02 16 9 C 0.05 1.32 5.11 -106.63 -0.55 0.78 16 10 C -0.21 -5.30 7.10 -39.29 -0.28 -5.58 16 11 C -0.13 -2.84 9.97 -39.98 -0.40 -3.24 16 12 C -0.20 -4.21 10.03 -39.37 -0.40 -4.60 16 13 C -0.17 -3.73 9.30 -39.42 -0.37 -4.09 16 14 C 0.13 3.01 6.68 -83.29 -0.56 2.45 16 15 N -0.74 -14.65 5.52 -58.20 -0.32 -14.97 16 16 C 0.11 1.71 4.55 -4.05 -0.02 1.69 16 17 C 0.14 1.81 3.30 -27.89 -0.09 1.72 16 18 H 0.11 1.50 8.05 -51.93 -0.42 1.08 16 19 O -0.55 -7.74 12.88 -35.23 -0.45 -8.19 16 20 C -0.11 -1.25 5.00 -104.62 -0.52 -1.77 16 21 C -0.11 -1.16 9.33 -39.58 -0.37 -1.53 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 24 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 25 C -0.11 -1.16 9.68 -39.58 -0.38 -1.55 16 26 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 27 H 0.10 2.46 4.75 -52.49 -0.25 2.21 16 28 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 29 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.09 1.74 6.73 -52.48 -0.35 1.39 16 31 H 0.40 8.43 6.67 -40.82 -0.27 8.15 16 32 H 0.06 0.86 7.94 -51.93 -0.41 0.44 16 33 H 0.05 0.75 7.95 -51.93 -0.41 0.34 16 34 H 0.37 4.16 7.39 45.56 0.34 4.50 16 35 H 0.12 1.09 6.62 -52.49 -0.35 0.74 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -29.76 321.84 -9.08 -38.83 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -4.21 Total: 14.32 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: -5.55 Total: -30.63 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.45 Total: -36.58 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.45 Total: -8.19 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.17 Total: 17.40 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.76 -9.08 -38.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251998293.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.108 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds