Wall clock time and date at job start Tue Mar 31 2020 05:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86792 * 120.00251 * 2 1 4 4 H 1.48504 * 109.46983 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47133 * 299.99356 * 3 2 1 6 6 H 1.48495 * 109.47273 * 59.99977 * 3 2 1 7 7 C 1.39890 * 119.99515 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99906 * 197.94369 * 7 2 1 9 9 C 1.41217 * 120.00032 * 17.94615 * 7 2 1 10 10 C 1.40834 * 120.18085 * 24.54226 * 9 7 2 11 11 C 1.36430 * 119.81194 * 180.02562 * 10 9 7 12 12 C 1.39311 * 120.18749 * 0.02562 * 11 10 9 13 13 O 1.35675 * 119.82151 * 179.97438 * 12 11 10 14 14 C 1.42897 * 117.00125 * 180.02562 * 13 12 11 15 15 C 1.53009 * 109.46921 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.46909 * 54.99978 * 15 14 13 17 17 O 1.42893 * 109.46936 * 294.99585 * 15 14 13 18 18 C 1.53006 * 109.46831 * 174.99581 * 15 14 13 19 19 N 1.46893 * 109.46666 * 184.99889 * 18 15 14 20 20 C 1.46902 * 111.00007 * 180.02562 * 19 18 15 21 21 C 1.52996 * 109.47570 * 180.02562 * 20 19 18 22 22 F 1.39895 * 109.47506 * 179.97438 * 21 20 19 23 23 C 1.39313 * 120.36303 * 0.25834 * 12 11 10 24 24 C 1.36440 * 120.18365 * 359.47478 * 23 12 11 25 25 H 0.96999 * 119.99379 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.09009 * 0.02562 * 10 9 7 27 27 H 1.08004 * 119.90814 * 179.97438 * 11 10 9 28 28 H 1.09003 * 109.47076 * 299.99458 * 14 13 12 29 29 H 1.08999 * 109.47809 * 59.99872 * 14 13 12 30 30 H 0.96701 * 113.99898 * 299.99763 * 17 15 14 31 31 H 1.09002 * 109.47022 * 304.99864 * 18 15 14 32 32 H 1.08998 * 109.46651 * 64.99954 * 18 15 14 33 33 H 1.00901 * 111.00667 * 56.04741 * 19 18 15 34 34 H 1.09010 * 109.47077 * 300.00041 * 20 19 18 35 35 H 1.09001 * 109.47202 * 59.99576 * 20 19 18 36 36 H 1.08997 * 109.47144 * 299.99834 * 21 20 19 37 37 H 1.09001 * 109.47244 * 59.99553 * 21 20 19 38 38 H 1.08002 * 119.90591 * 179.72214 * 23 12 11 39 39 H 1.08007 * 120.09092 * 180.25554 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6176 0.0000 4 1 3.7029 1.3462 0.0006 5 1 1.8843 2.3963 -1.2126 6 1 1.8842 2.3963 1.2124 7 6 2.0082 -1.2115 0.0005 8 1 3.0488 -1.2342 0.2887 9 6 1.3536 -2.4049 -0.3758 10 6 0.2246 -2.3583 -1.2164 11 6 -0.4024 -3.5158 -1.5748 12 6 0.0708 -4.7413 -1.1112 13 8 -0.5587 -5.8878 -1.4719 14 6 -0.0230 -7.1103 -0.9616 15 6 -0.8582 -8.2859 -1.4728 16 1 -0.9045 -8.2525 -2.5614 17 8 -2.1801 -8.1997 -0.9370 18 6 -0.2130 -9.6007 -1.0299 19 7 -0.9459 -10.7288 -1.6199 20 6 -0.3537 -12.0107 -1.2151 21 6 -1.1417 -13.1592 -1.8481 22 9 -0.5773 -14.3800 -1.4631 23 6 1.1834 -4.7957 -0.2746 24 6 1.8252 -3.6479 0.0889 25 1 -0.4849 0.8401 -0.0004 26 1 -0.1438 -1.4090 -1.5763 27 1 -1.2686 -3.4819 -2.2191 28 1 1.0076 -7.2238 -1.2981 29 1 -0.0495 -7.0919 0.1280 30 1 -2.2151 -8.2236 0.0291 31 1 0.8243 -9.6269 -1.3636 32 1 -0.2470 -9.6739 0.0571 33 1 -0.9842 -10.6492 -2.6250 34 1 0.6829 -12.0539 -1.5497 35 1 -0.3889 -12.1005 -0.1293 36 1 -2.1782 -13.1163 -1.5139 37 1 -1.1060 -13.0693 -2.9338 38 1 1.5413 -5.7495 0.0841 39 1 2.6901 -3.6921 0.7343 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335383506.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:58 Heat of formation + Delta-G solvation = -147.681799 kcal Electronic energy + Delta-G solvation = -21019.836931 eV Core-core repulsion = 17454.586791 eV Total energy + Delta-G solvation = -3565.250140 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.61775 -40.65847 -39.11227 -37.86254 -36.48680 -35.18170 -32.34791 -31.57894 -30.92790 -29.50883 -26.82166 -25.59226 -23.29344 -23.25026 -22.46025 -22.13236 -19.26054 -18.75868 -17.95213 -17.48266 -17.17451 -17.05467 -16.94102 -16.43010 -15.90112 -15.78476 -15.71003 -15.18400 -15.05957 -14.76299 -14.24878 -14.07120 -13.93010 -13.71038 -13.45131 -13.20129 -12.93955 -12.80184 -12.61291 -12.39034 -12.09272 -11.92061 -11.72981 -11.70250 -11.58224 -11.21898 -10.93654 -10.87241 -9.56795 -9.50935 -8.92915 -8.60048 -6.23140 0.94148 1.02072 1.39905 1.50813 1.55127 2.22602 2.33578 2.72045 3.07002 3.51685 3.69705 3.76329 3.88150 3.93724 4.00315 4.06015 4.20426 4.28637 4.34222 4.35937 4.45837 4.48880 4.61339 4.73145 4.86237 4.94745 5.02369 5.07143 5.21522 5.28161 5.58119 5.64031 5.82010 5.87890 6.05554 6.25913 6.28618 6.56306 6.79994 6.87884 6.94738 7.09950 8.36664 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.061080 B = 0.002339 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.305637 B =11968.220806 C =12271.437554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.032 3.968 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.498 4.498 8 H 0.076 0.924 9 C 0.054 3.946 10 C -0.153 4.153 11 C -0.135 4.135 12 C 0.001 3.999 13 O -0.331 6.331 14 C 0.028 3.972 15 C 0.124 3.876 16 H 0.099 0.901 17 O -0.561 6.561 18 C 0.042 3.958 19 N -0.684 5.684 20 C 0.031 3.969 21 C 0.062 3.938 22 F -0.233 7.233 23 C -0.164 4.164 24 C -0.209 4.209 25 H 0.287 0.713 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.384 0.616 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.351 0.649 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.130 0.870 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.212 -18.548 -2.278 18.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.528 4.528 8 H 0.094 0.906 9 C 0.052 3.948 10 C -0.173 4.173 11 C -0.153 4.153 12 C -0.043 4.043 13 O -0.247 6.247 14 C -0.048 4.048 15 C 0.064 3.936 16 H 0.117 0.883 17 O -0.367 6.367 18 C -0.088 4.088 19 N -0.316 5.316 20 C -0.099 4.099 21 C 0.006 3.994 22 F -0.214 7.214 23 C -0.183 4.183 24 C -0.228 4.228 25 H 0.098 0.902 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.233 0.767 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.169 0.831 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.148 0.852 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.199 -18.446 -2.504 18.654 hybrid contribution 1.403 0.821 0.304 1.654 sum 0.204 -17.625 -2.199 17.763 Atomic orbital electron populations 1.69901 1.08984 1.30416 1.36531 1.26759 0.95499 1.04560 0.91393 0.85151 0.79407 0.76249 0.78832 1.18130 1.19013 1.19198 1.19732 0.98358 0.92384 1.42315 0.90561 1.17967 0.92655 0.93412 0.90805 1.20902 0.99354 0.96401 1.00614 1.20015 1.01186 0.90724 1.03421 1.18681 0.96542 0.85514 1.03597 1.85875 1.55014 1.12805 1.70997 1.23518 0.98517 0.83630 0.99174 1.21791 0.82274 0.90184 0.99375 0.88288 1.86600 1.26976 1.96381 1.26790 1.22443 0.95835 0.89161 1.01332 1.60146 1.54900 1.00594 1.16004 1.22459 0.96749 0.88863 1.01850 1.21986 0.98134 0.78038 1.01198 1.92737 1.87756 1.47489 1.93417 1.20700 0.97266 0.98688 1.01636 1.20817 1.03690 0.92600 1.05715 0.90218 0.87282 0.87546 0.91143 0.91757 0.76738 0.92529 0.89257 0.83058 0.93695 0.90045 0.89187 0.89196 0.85226 0.87571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.08 10.96 21.82 0.24 -43.84 16 2 C 0.03 1.61 5.13 85.23 0.44 2.05 16 3 Si 0.98 38.41 29.60 68.60 2.03 40.44 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 5 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 6 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 7 C -0.50 -26.97 9.04 23.40 0.21 -26.75 16 8 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 9 C 0.05 2.93 5.57 -21.28 -0.12 2.81 16 10 C -0.15 -8.27 8.64 22.48 0.19 -8.07 16 11 C -0.13 -6.64 9.92 22.11 0.22 -6.42 16 12 C 0.00 0.02 6.71 22.79 0.15 0.18 16 13 O -0.33 -12.83 10.09 -85.29 -0.86 -13.69 16 14 C 0.03 0.75 4.36 71.99 0.31 1.06 16 15 C 0.12 2.61 3.43 30.60 0.10 2.72 16 16 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 17 O -0.56 -13.85 13.25 -144.34 -1.91 -15.76 16 18 C 0.04 0.61 5.32 86.31 0.46 1.07 16 19 N -0.68 -9.39 6.45 -513.88 -3.31 -12.70 16 20 C 0.03 0.36 6.14 86.30 0.53 0.89 16 21 C 0.06 0.70 7.81 71.98 0.56 1.26 16 22 F -0.23 -3.96 17.36 44.97 0.78 -3.18 16 23 C -0.16 -7.06 8.96 22.11 0.20 -6.87 16 24 C -0.21 -10.13 9.74 22.48 0.22 -9.91 16 25 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 26 H 0.11 6.12 6.16 -2.91 -0.02 6.10 16 27 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 28 H 0.07 1.71 7.66 -2.39 -0.02 1.69 16 29 H 0.06 1.60 7.64 -2.39 -0.02 1.59 16 30 H 0.38 7.10 9.05 -74.06 -0.67 6.43 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.35 4.20 8.73 -89.69 -0.78 3.42 16 34 H 0.04 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.13 4.50 6.27 -2.91 -0.02 4.48 16 39 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -65.05 334.63 0.07 -64.98 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: -0.38 Total: 29.74 kcal Atomic # 6 Polarization: -49.47 SS G_CDS: 3.49 Total: -45.98 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -3.07 Total: -56.54 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -2.77 Total: -29.45 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.78 Total: -3.18 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -65.05 0.07 -64.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335383506.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.699 kcal (2) G-P(sol) polarization free energy of solvation -65.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds