Wall clock time and date at job start Tue Mar 31 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00000 * 2 1 4 4 C 1.50697 * 109.47257 * 293.95399 * 3 2 1 5 5 C 1.38388 * 119.92291 * 269.72027 * 4 3 2 6 6 C 1.38340 * 120.30232 * 179.76235 * 5 4 3 7 7 C 1.37974 * 120.15148 * 0.51713 * 6 5 4 8 8 C 1.39607 * 119.84757 * 359.74364 * 7 6 5 9 9 C 1.43198 * 120.15393 * 179.97438 * 8 7 6 10 10 N 6.51504 * 57.02242 * 328.90553 * 2 1 3 11 11 C 1.37925 * 119.92610 * 89.99808 * 4 3 2 12 12 C 1.46902 * 110.99923 * 123.95605 * 2 1 3 13 13 C 1.53000 * 109.47191 * 160.27281 * 12 2 1 14 14 H 1.09004 * 109.46921 * 55.41025 * 13 12 2 15 15 C 1.47194 * 109.47154 * 295.41617 * 13 12 2 16 16 N 3.65895 * 124.14489 * 202.98594 * 2 1 3 17 17 C 1.52993 * 109.47443 * 175.41311 * 13 12 2 18 18 C 1.50703 * 109.47571 * 185.00390 * 17 13 12 19 19 H 1.07995 * 119.99662 * 359.97438 * 18 17 13 20 20 C 1.37877 * 120.00130 * 180.02562 * 18 17 13 21 21 N 1.31515 * 120.00077 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99944 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47072 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46683 * 119.99951 * 22 20 18 25 25 H 1.48496 * 109.47238 * 239.99738 * 22 20 18 26 26 H 1.09000 * 109.46859 * 65.56764 * 1 2 3 27 27 H 1.09001 * 109.46912 * 185.55829 * 1 2 3 28 28 H 1.08995 * 109.47329 * 305.56460 * 1 2 3 29 29 H 1.09004 * 109.47403 * 173.95240 * 3 2 1 30 30 H 1.09005 * 109.47010 * 53.95255 * 3 2 1 31 31 H 1.07996 * 119.85103 * 0.02562 * 5 4 3 32 32 H 1.07998 * 119.92360 * 180.25762 * 6 5 4 33 33 H 1.07999 * 120.07675 * 179.72167 * 7 6 5 34 34 H 1.08004 * 120.07793 * 359.95918 * 11 4 3 35 35 H 1.08995 * 109.46854 * 280.27267 * 12 2 1 36 36 H 1.08995 * 109.47470 * 40.27548 * 12 2 1 37 37 H 1.09004 * 109.47030 * 305.00001 * 17 13 12 38 38 H 1.09002 * 109.47174 * 64.99845 * 17 13 12 39 39 H 0.96998 * 120.00315 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 2.4987 1.9687 -2.3784 6 6 2.1752 2.5819 -3.5755 7 6 0.9945 3.2854 -3.6969 8 6 0.1230 3.3731 -2.6098 9 6 -1.1039 4.1020 -2.7284 10 7 -2.0772 4.6801 -2.8226 11 6 0.4534 2.7471 -1.4060 12 6 1.9954 -0.7660 1.1376 13 6 3.4459 -1.1641 0.8569 14 1 4.0307 -0.2718 0.6332 15 6 3.4892 -2.0804 -0.2941 16 7 3.5227 -2.7878 -1.1825 17 6 4.0303 -1.8619 2.0866 18 6 5.4927 -2.1440 1.8566 19 1 5.9585 -1.8548 0.9262 20 6 6.2357 -2.7721 2.8336 21 7 5.6683 -3.1247 3.9665 22 14 8.0482 -3.1224 2.5481 23 1 8.4418 -2.6297 1.2037 24 1 8.8553 -2.4298 3.5845 25 1 8.2885 -4.5855 2.6296 26 1 -0.3633 0.4251 -0.9356 27 1 -0.3633 -1.0229 0.0995 28 1 -0.3634 0.5977 0.8359 29 1 3.0797 1.3444 0.1083 30 1 1.5610 1.9273 0.8309 31 1 3.4261 1.4228 -2.2875 32 1 2.8503 2.5133 -4.4157 33 1 0.7452 3.7674 -4.6307 34 1 -0.2165 2.8107 -0.5612 35 1 1.9545 -0.1534 2.0381 36 1 1.3937 -1.6635 1.2810 37 1 3.9174 -1.2171 2.9582 38 1 3.5018 -2.7998 2.2577 39 1 6.1910 -3.5662 4.6539 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027207922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:11 Heat of formation + Delta-G solvation = 74.272826 kcal Electronic energy + Delta-G solvation = -20643.912563 eV Core-core repulsion = 17551.349073 eV Total energy + Delta-G solvation = -3092.563489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.99767 -38.00707 -36.67221 -35.67823 -33.67762 -32.33927 -31.63334 -31.22604 -27.54376 -27.00999 -24.58768 -23.99663 -22.40011 -21.76886 -21.25556 -18.53880 -16.81286 -16.55799 -16.48908 -15.98940 -15.27447 -15.04041 -14.83625 -14.36513 -14.23146 -14.15499 -13.40426 -13.33516 -13.08757 -12.97491 -12.81874 -12.49965 -12.33301 -12.08981 -11.95322 -11.82313 -11.53860 -11.43440 -11.31135 -11.13694 -11.06204 -10.72417 -10.53035 -10.22722 -9.57854 -9.26127 -9.21867 -9.09101 -8.48884 -8.29055 -6.12525 -4.15660 0.53587 1.01585 2.39062 2.69267 3.26400 3.35068 3.38991 3.53268 3.60380 3.71944 3.82751 4.09840 4.39144 4.48977 4.56370 4.76235 4.87483 4.99396 5.08688 5.19621 5.25936 5.28134 5.34731 5.47473 5.55404 5.64381 5.70667 5.79495 5.90005 5.95687 5.96562 6.07461 6.29681 6.31816 6.45464 6.54411 7.04255 7.05729 7.20467 7.39240 7.49730 7.82877 8.20123 8.57612 8.89488 9.50169 10.98398 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.027445 B = 0.003257 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.973245 B = 8593.832704 C = 8957.238534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.085 3.915 4 C -0.071 4.071 5 C -0.064 4.064 6 C -0.120 4.120 7 C -0.073 4.073 8 C -0.037 4.037 9 C 0.259 3.741 10 N -0.425 5.425 11 C -0.065 4.065 12 C 0.061 3.939 13 C 0.012 3.988 14 H 0.099 0.901 15 C 0.256 3.744 16 N -0.480 5.480 17 C 0.030 3.970 18 C -0.525 4.525 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.284 1.284 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.026 0.974 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.678 13.051 -8.725 17.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.264 5.264 3 C -0.042 4.042 4 C -0.072 4.072 5 C -0.083 4.083 6 C -0.138 4.138 7 C -0.094 4.094 8 C -0.040 4.040 9 C -0.057 4.057 10 N -0.100 5.100 11 C -0.086 4.086 12 C -0.068 4.068 13 C -0.010 4.010 14 H 0.117 0.883 15 C -0.060 4.060 16 N -0.157 5.157 17 C -0.008 4.008 18 C -0.563 4.563 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.530 5.530 22 Si 0.718 3.282 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.210 1.210 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.958 12.561 -10.462 19.141 hybrid contribution 1.111 0.117 1.045 1.530 sum -8.848 12.678 -9.416 18.102 Atomic orbital electron populations 1.22458 0.87452 1.02033 1.00670 1.62014 1.07769 1.12298 1.44291 1.21206 1.01886 0.88342 0.92743 1.19727 0.93901 0.97092 0.96480 1.21410 0.99452 0.95605 0.91842 1.21126 0.96683 0.97781 0.98240 1.21148 0.93359 0.97691 0.97214 1.15932 0.90041 1.01786 0.96247 1.25776 0.92942 0.93300 0.93640 1.81253 1.11201 1.09944 1.07620 1.21089 0.96332 0.95218 0.95956 1.22297 0.95426 0.97974 0.91063 1.19220 0.95401 0.95442 0.90925 0.88311 1.28841 0.91221 0.92983 0.92999 1.80994 1.10398 1.11353 1.12939 1.19183 0.95866 0.96044 0.89749 1.21168 0.94259 1.39065 1.01822 0.92425 1.24954 0.98563 0.95373 0.95097 1.69943 1.36276 1.40640 1.06169 0.86549 0.85176 0.78113 0.78328 1.19641 1.20876 1.20983 0.91465 0.91324 0.95508 0.88626 0.93223 0.84791 0.84890 0.85264 0.85291 0.92391 0.90091 0.94461 0.95597 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.00 60.06 0.54 0.76 16 2 N -0.54 -6.28 4.37 -244.38 -1.07 -7.34 16 3 C 0.09 0.82 4.94 -4.98 -0.02 0.80 16 4 C -0.07 -0.64 4.88 -104.68 -0.51 -1.15 16 5 C -0.06 -0.56 9.69 -39.49 -0.38 -0.94 16 6 C -0.12 -0.89 10.03 -39.64 -0.40 -1.29 16 7 C -0.07 -0.54 9.76 -39.17 -0.38 -0.92 16 8 C -0.04 -0.31 5.73 -106.93 -0.61 -0.92 16 9 C 0.26 2.63 15.33 -22.48 -0.34 2.29 16 10 N -0.42 -5.28 18.54 41.84 0.78 -4.50 16 11 C -0.06 -0.54 7.81 -39.17 -0.31 -0.85 16 12 C 0.06 0.81 4.37 -3.82 -0.02 0.79 16 13 C 0.01 0.21 2.26 -93.41 -0.21 -0.01 16 14 H 0.10 1.53 6.67 -51.93 -0.35 1.18 16 15 C 0.26 5.04 13.66 -20.76 -0.28 4.76 16 16 N -0.48 -10.38 18.54 42.16 0.78 -9.60 16 17 C 0.03 0.66 4.42 -27.89 -0.12 0.54 16 18 C -0.52 -13.44 8.60 -34.44 -0.30 -13.73 16 19 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 22 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H 0.07 0.65 6.53 -51.93 -0.34 0.31 16 27 H 0.07 0.70 7.84 -51.93 -0.41 0.30 16 28 H 0.03 0.23 8.07 -51.93 -0.42 -0.19 16 29 H 0.10 0.93 6.51 -51.93 -0.34 0.59 16 30 H 0.05 0.42 8.01 -51.93 -0.42 0.01 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.13 0.94 8.03 -52.48 -0.42 0.52 16 35 H 0.06 0.69 8.00 -51.93 -0.42 0.28 16 36 H 0.08 1.10 7.74 -51.93 -0.40 0.70 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 345.29 15.07 5.20 5.20 Total: -1.00 -30.68 345.29 -7.19 -37.87 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: -5.15 Total: -4.87 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -3.45 Total: -8.32 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 1.22 Total: -45.62 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.68 -7.19 -37.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027207922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.148 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds