Wall clock time and date at job start Tue Mar 31 2020 05:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00133 * 2 1 4 4 H 1.48503 * 109.47178 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47453 * 300.00510 * 3 2 1 6 6 H 1.48504 * 109.47096 * 60.00521 * 3 2 1 7 7 C 1.37880 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00130 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99979 * 359.97438 * 7 2 1 10 10 N 1.46891 * 109.47206 * 184.74876 * 9 7 2 11 11 C 1.46905 * 110.99913 * 63.32295 * 10 9 7 12 12 C 1.50695 * 109.47444 * 66.04454 * 11 10 9 13 13 C 1.38225 * 119.61813 * 95.00175 * 12 11 10 14 14 C 1.38632 * 119.15938 * 180.02562 * 13 12 11 15 15 C 1.38667 * 118.42387 * 359.97438 * 14 13 12 16 16 C 1.38190 * 119.16058 * 0.25310 * 15 14 13 17 17 N 1.31856 * 119.62017 * 275.02200 * 12 11 10 18 18 C 1.46903 * 111.00180 * 299.36960 * 10 9 7 19 19 C 1.50700 * 109.46746 * 287.93732 * 18 10 9 20 20 C 1.38223 * 119.61748 * 94.72888 * 19 18 10 21 21 C 1.38634 * 119.16134 * 179.73209 * 20 19 18 22 22 C 1.38671 * 118.42008 * 0.53068 * 21 20 19 23 23 C 1.38183 * 119.16271 * 359.73303 * 22 21 20 24 24 N 1.31851 * 119.61933 * 275.00042 * 19 18 10 25 25 H 0.97003 * 119.99948 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47079 * 64.74515 * 9 7 2 27 27 H 1.09004 * 109.46565 * 304.75230 * 9 7 2 28 28 H 1.08998 * 109.46845 * 306.04464 * 11 10 9 29 29 H 1.08996 * 109.47175 * 186.04821 * 11 10 9 30 30 H 1.07998 * 120.42181 * 0.04404 * 13 12 11 31 31 H 1.08005 * 120.78623 * 180.02562 * 14 13 12 32 32 H 1.08000 * 120.42084 * 179.97438 * 15 14 13 33 33 H 1.07997 * 119.61523 * 179.75407 * 16 15 14 34 34 H 1.08995 * 109.47323 * 47.93664 * 18 10 9 35 35 H 1.09000 * 109.47184 * 167.94086 * 18 10 9 36 36 H 1.07998 * 120.41875 * 359.97438 * 20 19 18 37 37 H 1.08002 * 120.79217 * 180.27850 * 21 20 19 38 38 H 1.07993 * 120.42038 * 179.70944 * 22 21 20 39 39 H 1.07994 * 119.61936 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2015 -3.6134 0.1135 11 6 2.9222 -3.5617 1.3926 12 6 1.9552 -3.7982 2.5240 13 6 1.8021 -5.0727 3.0367 14 6 0.9095 -5.2795 4.0771 15 6 0.2015 -4.1918 4.5654 16 6 0.4039 -2.9475 3.9993 17 7 1.2646 -2.7870 3.0131 18 6 3.1380 -3.6245 -1.0183 19 6 2.4150 -4.0675 -2.2641 20 6 1.8913 -3.1199 -3.1234 21 6 1.2329 -3.5379 -4.2696 22 6 1.1156 -4.8996 -4.5039 23 6 1.6599 -5.7884 -3.5965 24 7 2.2846 -5.3545 -2.5190 25 1 -0.4850 0.8401 0.0004 26 1 0.6894 -2.5944 -0.9297 27 1 0.5624 -2.5211 0.8441 28 1 3.3854 -2.5820 1.5093 29 1 3.6932 -4.3321 1.4066 30 1 2.3708 -5.8968 2.6321 31 1 0.7695 -6.2643 4.4978 32 1 -0.5024 -4.3163 5.3749 33 1 -0.1466 -2.0960 4.3713 34 1 3.5390 -2.6221 -1.1680 35 1 3.9547 -4.3148 -0.8073 36 1 1.9971 -2.0672 -2.9067 37 1 0.8175 -2.8201 -4.9615 38 1 0.6050 -5.2610 -5.3842 39 1 1.5725 -6.8505 -3.7715 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034959833.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:40 Heat of formation + Delta-G solvation = 85.017378 kcal Electronic energy + Delta-G solvation = -21809.968484 eV Core-core repulsion = 18717.870914 eV Total energy + Delta-G solvation = -3092.097571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.81897 -39.53868 -36.58581 -32.48818 -32.27048 -31.89231 -31.65752 -30.37681 -27.18752 -26.48863 -24.25996 -23.00848 -22.95679 -22.39936 -21.19111 -19.73483 -16.84090 -16.22859 -16.05189 -15.76818 -15.65887 -15.07944 -14.92655 -14.74759 -14.58321 -13.69390 -13.28829 -13.15367 -12.80591 -12.76773 -12.64587 -12.24620 -12.18335 -11.42898 -11.37936 -10.97943 -10.87325 -10.79434 -10.68604 -10.24573 -9.97325 -9.58307 -9.37951 -9.31162 -8.93555 -8.68302 -8.56579 -8.42613 -8.29266 -7.16054 -5.91951 -3.98033 1.53226 1.66552 1.77648 1.81019 3.31099 3.39908 3.41837 4.15823 4.39811 4.48339 4.81069 4.90574 5.15237 5.21515 5.23359 5.29784 5.40230 5.45401 5.50152 5.57096 5.62581 5.68318 5.94891 5.99012 6.11401 6.16034 6.20395 6.31983 6.44305 6.48619 6.59830 6.63899 6.72305 6.76660 7.17320 7.20736 7.32554 7.65742 8.00004 8.05851 8.28716 8.36889 8.53376 8.70861 9.08758 9.66266 11.14134 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.007433 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.134213 B = 3766.177980 C = 5733.354221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.183 3.817 10 N -0.529 5.529 11 C 0.107 3.893 12 C 0.155 3.845 13 C -0.163 4.163 14 C -0.086 4.086 15 C -0.189 4.189 16 C 0.099 3.901 17 N -0.443 5.443 18 C 0.105 3.895 19 C 0.156 3.844 20 C -0.145 4.145 21 C -0.083 4.083 22 C -0.187 4.187 23 C 0.086 3.914 24 N -0.475 5.475 25 H 0.258 0.742 26 H 0.024 0.976 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.148 0.852 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.143 0.857 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.741 -9.735 -0.010 10.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.131 4.131 3 Si 0.710 3.290 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.572 4.572 8 H 0.072 0.928 9 C 0.057 3.943 10 N -0.253 5.253 11 C -0.022 4.022 12 C 0.017 3.983 13 C -0.184 4.184 14 C -0.112 4.112 15 C -0.210 4.210 16 C -0.059 4.059 17 N -0.151 5.151 18 C -0.024 4.024 19 C 0.018 3.982 20 C -0.165 4.165 21 C -0.109 4.109 22 C -0.207 4.207 23 C -0.071 4.071 24 N -0.184 5.184 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.165 0.835 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.161 0.839 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.804 -9.825 0.209 10.219 hybrid contribution 0.002 1.566 -0.224 1.582 sum 2.807 -8.259 -0.014 8.723 Atomic orbital electron populations 1.69960 1.05909 1.26202 1.50477 1.24829 0.94569 0.98595 0.95077 0.86722 0.80187 0.84673 0.77438 1.19969 1.21328 1.21107 1.21553 0.92791 0.91880 1.51024 0.92786 1.19902 0.91222 0.84998 0.98136 1.62505 1.16399 1.47685 0.98698 1.20819 0.92746 1.01253 0.87341 1.21215 0.94242 0.88423 0.94406 1.21928 1.00403 0.98217 0.97840 1.21429 0.95267 0.98720 0.95822 1.22040 1.01975 0.94538 1.02405 1.22788 0.94825 0.96295 0.92001 1.67774 1.04707 1.34289 1.08372 1.20842 0.93486 1.00109 0.87915 1.21187 0.94148 0.87989 0.94905 1.22231 0.97681 1.02269 0.94302 1.21544 0.96676 0.95761 0.96929 1.21996 1.02912 0.94388 1.01434 1.22600 0.94608 0.99720 0.90172 1.67474 1.15120 1.17458 1.18355 0.93216 0.95842 0.93265 0.91712 0.91331 0.85338 0.85719 0.85737 0.83475 0.91519 0.91209 0.83898 0.85462 0.85727 0.83637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 2 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 3 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.53 -14.09 7.34 -34.44 -0.25 -14.35 16 8 H 0.05 1.41 5.95 -52.49 -0.31 1.10 16 9 C 0.18 4.65 4.64 -4.98 -0.02 4.63 16 10 N -0.53 -11.36 4.65 -238.97 -1.11 -12.47 16 11 C 0.11 2.09 5.10 -4.98 -0.03 2.07 16 12 C 0.16 3.03 5.70 -82.59 -0.47 2.56 16 13 C -0.16 -2.65 9.72 -39.44 -0.38 -3.03 16 14 C -0.09 -1.23 10.18 -39.28 -0.40 -1.63 16 15 C -0.19 -2.76 10.11 -39.44 -0.40 -3.16 16 16 C 0.10 1.75 11.18 -17.55 -0.20 1.55 16 17 N -0.44 -9.42 8.76 -9.48 -0.08 -9.50 16 18 C 0.11 2.04 5.13 -4.97 -0.03 2.02 16 19 C 0.16 3.00 5.84 -82.59 -0.48 2.52 16 20 C -0.14 -2.68 8.46 -39.44 -0.33 -3.02 16 21 C -0.08 -1.31 10.18 -39.28 -0.40 -1.70 16 22 C -0.19 -2.65 10.11 -39.44 -0.40 -3.05 16 23 C 0.09 1.32 11.18 -17.55 -0.20 1.12 16 24 N -0.47 -8.72 10.27 -9.47 -0.10 -8.82 16 25 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.02 0.65 6.55 -51.93 -0.34 0.31 16 27 H 0.05 1.40 6.16 -51.93 -0.32 1.08 16 28 H 0.06 1.39 6.62 -51.93 -0.34 1.05 16 29 H 0.07 1.13 7.76 -51.93 -0.40 0.73 16 30 H 0.13 1.81 8.06 -52.49 -0.42 1.38 16 31 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.15 2.34 8.06 -52.49 -0.42 1.92 16 34 H 0.07 1.35 6.03 -51.93 -0.31 1.04 16 35 H 0.07 1.22 7.81 -51.93 -0.41 0.81 16 36 H 0.14 2.82 8.06 -52.49 -0.42 2.40 16 37 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 38 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 327.78 15.07 4.94 4.94 Total: -1.00 -31.66 327.78 -9.67 -41.33 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.95 Total: 4.93 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -4.08 Total: -11.59 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.55 Total: -55.89 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.66 -9.67 -41.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034959833.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.352 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds