Wall clock time and date at job start Tue Mar 31 2020 05:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46910 * 2 1 4 4 C 1.53000 * 109.46964 * 120.00110 * 2 1 3 5 5 N 1.46907 * 109.46536 * 180.32996 * 4 2 1 6 6 C 1.46899 * 111.00372 * 287.38359 * 5 4 2 7 7 C 1.50701 * 109.46939 * 75.53107 * 6 5 4 8 8 H 1.08003 * 120.00209 * 5.14615 * 7 6 5 9 9 C 1.37873 * 119.99593 * 185.14922 * 7 6 5 10 10 N 1.31513 * 120.00227 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99590 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47312 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47018 * 120.00020 * 11 9 7 14 14 H 1.48503 * 109.47082 * 240.00033 * 11 9 7 15 15 C 1.46899 * 110.99420 * 163.42812 * 5 4 2 16 16 C 1.50699 * 109.47352 * 288.56361 * 15 5 4 17 17 C 1.38206 * 120.00045 * 265.44094 * 16 15 5 18 18 C 1.38427 * 119.99981 * 179.77061 * 17 16 15 19 19 F 1.35099 * 120.00318 * 180.27788 * 18 17 16 20 20 C 1.38477 * 119.99785 * 0.52911 * 18 17 16 21 21 C 1.38161 * 120.00263 * 359.72872 * 20 18 17 22 22 C 1.38434 * 120.00197 * 85.72204 * 16 15 5 23 23 F 1.35106 * 119.99544 * 359.97405 * 22 16 15 24 24 H 1.09001 * 109.46904 * 299.99881 * 1 2 3 25 25 H 1.09000 * 109.47144 * 59.99749 * 1 2 3 26 26 H 1.08995 * 109.47091 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46904 * 240.00119 * 2 1 3 28 28 H 1.09001 * 109.47075 * 64.90646 * 3 2 1 29 29 H 1.08997 * 109.46816 * 184.89851 * 3 2 1 30 30 H 1.08995 * 109.47233 * 304.90666 * 3 2 1 31 31 H 1.09000 * 109.47250 * 60.33714 * 4 2 1 32 32 H 1.08991 * 109.47445 * 300.33018 * 4 2 1 33 33 H 1.08997 * 109.47028 * 195.53067 * 6 5 4 34 34 H 1.09003 * 109.46859 * 315.52784 * 6 5 4 35 35 H 0.97008 * 119.99566 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.47125 * 48.56450 * 15 5 4 37 37 H 1.09004 * 109.46998 * 168.56242 * 15 5 4 38 38 H 1.07999 * 119.99872 * 0.02591 * 17 16 15 39 39 H 1.07998 * 119.99954 * 179.70218 * 20 18 17 40 40 H 1.07999 * 120.00290 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5091 -0.7143 1.2531 6 6 4.0427 -1.6384 0.2435 7 6 3.8920 -1.0277 -1.1259 8 1 3.5219 -0.0183 -1.2294 9 6 4.2267 -1.7575 -2.2467 10 7 4.6769 -2.9868 -2.1208 11 14 4.0393 -1.0007 -3.9443 12 1 3.5168 0.3832 -3.8144 13 1 5.3610 -0.9688 -4.6206 14 1 3.0918 -1.8148 -4.7473 15 6 4.0334 -1.0329 2.5879 16 6 3.7831 0.1276 3.5161 17 6 4.7645 1.0811 3.7105 18 6 4.5328 2.1497 4.5594 19 9 5.4900 3.0848 4.7451 20 6 3.3219 2.2573 5.2224 21 6 2.3427 1.3013 5.0322 22 6 2.5724 0.2355 4.1786 23 9 1.6150 -0.6994 3.9925 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.7502 1.9303 0.9307 29 1 3.1265 1.4437 -0.0878 30 1 1.6067 1.9811 -0.8427 31 1 1.6817 -1.7507 1.2462 32 1 1.6719 -0.2110 2.1392 33 1 5.0976 -1.8256 0.4438 34 1 3.4926 -2.5785 0.2847 35 1 4.9127 -3.5001 -2.9094 36 1 3.5318 -1.9208 2.9729 37 1 5.1050 -1.2209 2.5219 38 1 5.7106 0.9948 3.1968 39 1 3.1429 3.0884 5.8885 40 1 1.3984 1.3850 5.5496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043458724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:34 Heat of formation + Delta-G solvation = -65.582568 kcal Electronic energy + Delta-G solvation = -23119.293005 eV Core-core repulsion = 19569.975744 eV Total energy + Delta-G solvation = -3549.317261 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.144 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.93546 -48.89965 -39.03474 -37.28408 -33.93448 -32.77140 -31.32103 -29.96356 -27.40960 -26.38991 -26.18839 -24.09024 -22.81826 -21.73765 -20.59686 -19.04807 -17.59283 -17.15921 -17.07475 -16.34731 -16.09159 -15.44621 -14.86947 -14.61618 -14.40613 -14.29915 -13.85655 -13.75979 -13.53462 -13.06598 -12.75635 -12.50175 -12.29861 -12.13167 -11.89202 -11.70200 -11.46208 -11.26821 -11.04008 -10.94226 -10.60178 -10.46773 -10.13743 -10.06225 -9.92742 -9.41410 -9.06003 -9.01587 -8.48355 -8.37976 -7.28923 -6.02851 -4.00663 0.98077 1.07043 3.30269 3.37554 3.38937 3.43380 4.16679 4.23470 4.42095 4.57508 4.72778 4.95319 5.09297 5.18011 5.30806 5.59943 5.67906 5.73283 5.77876 5.92574 5.99114 5.99983 6.07951 6.13271 6.17328 6.29997 6.34818 6.42737 6.49130 6.60485 6.75167 6.81452 6.87059 7.17851 7.24012 7.32840 7.49730 7.85746 8.08743 8.16794 8.52200 9.06096 9.60418 11.07670 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.018887 B = 0.005283 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.113296 B = 5299.004055 C = 5704.076625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C -0.126 4.126 4 C 0.067 3.933 5 N -0.527 5.527 6 C 0.191 3.809 7 C -0.504 4.504 8 H 0.081 0.919 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.890 3.110 12 H -0.270 1.270 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.087 3.913 16 C -0.061 4.061 17 C -0.107 4.107 18 C 0.087 3.913 19 F -0.139 7.139 20 C -0.136 4.136 21 C -0.127 4.127 22 C 0.091 3.909 23 F -0.130 7.130 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.117 0.883 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.022 0.978 32 H 0.060 0.940 33 H 0.024 0.976 34 H -0.002 1.002 35 H 0.260 0.740 36 H 0.040 0.960 37 H 0.086 0.914 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.154 7.902 13.393 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 C -0.183 4.183 4 C -0.061 4.061 5 N -0.251 5.251 6 C 0.066 3.934 7 C -0.542 4.542 8 H 0.099 0.901 9 C -0.147 4.147 10 N -0.538 5.538 11 Si 0.718 3.282 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.042 4.042 16 C -0.062 4.062 17 C -0.127 4.127 18 C 0.068 3.932 19 F -0.118 7.118 20 C -0.155 4.155 21 C -0.146 4.146 22 C 0.071 3.929 23 F -0.109 7.109 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.135 0.865 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.016 0.984 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.926 8.202 13.149 15.987 hybrid contribution -0.373 -0.536 -0.745 0.991 sum -4.299 7.666 12.403 15.202 Atomic orbital electron populations 1.21832 0.97325 1.00636 1.00293 1.21559 0.92795 0.97062 1.01463 1.21629 1.02737 0.95404 0.98579 1.22218 0.88038 0.97938 0.97933 1.62197 1.06906 1.54008 1.01978 1.19839 0.94668 0.89431 0.89431 1.21474 1.42146 1.00910 0.89688 0.90074 1.25000 0.95628 0.94880 0.99223 1.69973 1.44846 1.09517 1.29504 0.86550 0.77717 0.79515 0.84399 1.19455 1.21112 1.21169 1.21010 1.01435 0.91753 0.89964 1.19931 0.91711 0.98093 0.96491 1.20946 1.01074 0.92685 0.97974 1.17665 0.87017 0.88771 0.99791 1.91498 1.62588 1.63563 1.94123 1.20863 0.92225 1.00668 1.01759 1.20888 1.00544 0.93697 0.99502 1.17563 0.86841 0.89017 0.99490 1.91471 1.62187 1.63590 1.93645 0.94115 0.93370 0.93480 0.86518 0.95009 0.90856 0.94782 0.96019 0.92204 0.95772 0.98405 0.93078 0.94180 0.89592 0.83576 0.84213 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.19 37.16 0.34 -2.01 16 2 C -0.11 -2.15 2.39 -90.62 -0.22 -2.36 16 3 C -0.13 -2.34 8.35 37.16 0.31 -2.03 16 4 C 0.07 1.30 3.91 -3.82 -0.01 1.29 16 5 N -0.53 -10.79 3.74 -237.51 -0.89 -11.68 16 6 C 0.19 4.73 4.76 -4.98 -0.02 4.70 16 7 C -0.50 -13.28 6.85 -34.44 -0.24 -13.52 16 8 H 0.08 2.09 4.31 -52.48 -0.23 1.86 16 9 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 10 N -0.90 -26.01 13.29 55.43 0.74 -25.28 16 11 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.09 1.50 4.98 -4.98 -0.02 1.48 16 16 C -0.06 -0.91 5.17 -104.56 -0.54 -1.45 16 17 C -0.11 -1.48 9.66 -39.52 -0.38 -1.86 16 18 C 0.09 1.10 7.30 -39.42 -0.29 0.81 16 19 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 20 C -0.14 -1.48 10.02 -39.52 -0.40 -1.87 16 21 C -0.13 -1.44 10.02 -39.53 -0.40 -1.84 16 22 C 0.09 1.28 6.17 -39.42 -0.24 1.04 16 23 F -0.13 -1.98 14.24 2.25 0.03 -1.95 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.12 2.67 4.94 -51.93 -0.26 2.41 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 1.50 6.54 -51.93 -0.34 1.16 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.02 0.45 7.81 -51.93 -0.41 0.05 16 32 H 0.06 1.08 4.12 -51.93 -0.21 0.87 16 33 H 0.02 0.63 7.66 -51.93 -0.40 0.23 16 34 H 0.00 -0.05 7.78 -51.93 -0.40 -0.46 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.04 0.70 7.69 -51.93 -0.40 0.30 16 37 H 0.09 1.43 7.61 -51.93 -0.40 1.04 16 38 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 325.28 15.07 4.90 4.90 Total: -1.00 -28.14 325.28 -7.96 -36.10 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.56 Total: -0.20 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -2.21 Total: -16.26 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.15 Total: -36.96 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.07 Total: -3.71 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.14 -7.96 -36.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043458724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.481 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds