Wall clock time and date at job start Tue Mar 31 2020 06:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46907 * 109.47016 * 2 1 4 4 C 1.46901 * 110.99561 * 59.84407 * 3 2 1 5 5 C 1.53000 * 109.47157 * 66.04814 * 4 3 2 6 6 C 1.52998 * 109.46744 * 179.97438 * 5 4 3 7 7 S 1.81007 * 109.47003 * 179.97438 * 6 5 4 8 8 C 1.76200 * 99.99965 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99973 * 0.02562 * 8 7 6 10 10 C 1.38803 * 119.99980 * 179.97438 * 8 7 6 11 11 N 1.31627 * 119.99495 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99916 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47075 * 90.00472 * 12 10 8 14 14 H 1.48501 * 109.46823 * 210.00311 * 12 10 8 15 15 H 1.48504 * 109.47127 * 330.00065 * 12 10 8 16 16 C 1.46892 * 110.99812 * 295.88979 * 3 2 1 17 17 C 1.50698 * 109.47210 * 288.37023 * 16 3 2 18 18 C 1.39868 * 126.03898 * 95.53567 * 17 16 3 19 19 N 1.30840 * 108.20235 * 179.97438 * 18 17 16 20 20 N 1.40084 * 108.20417 * 359.97438 * 19 18 17 21 21 C 1.46498 * 126.03695 * 180.02562 * 20 19 18 22 22 C 1.34948 * 107.92815 * 359.76298 * 20 19 18 23 23 H 1.08997 * 109.47470 * 300.40004 * 1 2 3 24 24 H 1.08999 * 109.47321 * 60.40790 * 1 2 3 25 25 H 1.09007 * 109.46951 * 180.40700 * 1 2 3 26 26 H 1.09000 * 109.47155 * 240.00006 * 2 1 3 27 27 H 1.09001 * 109.47277 * 119.99607 * 2 1 3 28 28 H 1.08998 * 109.47025 * 306.04229 * 4 3 2 29 29 H 1.09004 * 109.46910 * 186.04982 * 4 3 2 30 30 H 1.08999 * 109.46930 * 299.99321 * 5 4 3 31 31 H 1.09002 * 109.47158 * 59.99651 * 5 4 3 32 32 H 1.09008 * 109.47287 * 299.99657 * 6 5 4 33 33 H 1.09002 * 109.47354 * 60.00046 * 6 5 4 34 34 H 0.97007 * 119.99141 * 179.97438 * 11 10 8 35 35 H 1.09003 * 109.47319 * 48.37562 * 16 3 2 36 36 H 1.09006 * 109.47296 * 168.37044 * 16 3 2 37 37 H 1.07996 * 125.90278 * 359.97438 * 18 17 16 38 38 H 1.09004 * 109.47272 * 89.97690 * 21 20 19 39 39 H 1.09003 * 109.47440 * 209.97901 * 21 20 19 40 40 H 1.08997 * 109.47211 * 329.98221 * 21 20 19 41 41 H 1.07993 * 126.13107 * 180.23384 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5455 2.1109 1.1859 5 6 2.1739 1.5027 2.4412 6 6 1.6806 2.2592 3.6762 7 16 2.4234 1.5392 5.1615 8 6 1.7043 2.5720 6.3947 9 1 1.0265 3.3627 6.1088 10 6 2.0081 2.3687 7.7337 11 7 2.8338 1.4046 8.0821 12 14 1.2452 3.4632 9.0412 13 1 -0.0364 2.8685 9.4983 14 1 2.1752 3.5803 10.1930 15 1 0.9904 4.8108 8.4716 16 6 1.6305 2.0809 -1.2337 17 6 2.4357 1.5438 -2.3888 18 6 2.0332 0.5408 -3.2766 19 7 2.9969 0.3487 -4.1404 20 7 4.0445 1.2252 -3.8294 21 6 5.3160 1.3380 -4.5483 22 6 3.6732 1.9514 -2.7543 23 1 -0.3634 0.5200 0.8863 24 1 -0.3634 0.5075 -0.8936 25 1 -0.3633 -1.0277 0.0073 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.4601 2.0340 1.2490 29 1 1.8314 3.1600 1.1081 30 1 1.8879 0.4538 2.5190 31 1 3.2594 1.5797 2.3780 32 1 1.9669 3.3081 3.5983 33 1 0.5951 2.1826 3.7397 34 1 3.0464 1.2628 9.0179 35 1 0.5695 1.9182 -1.4236 36 1 1.8203 3.1487 -1.1240 37 1 1.0898 0.0155 -3.2532 38 1 5.2194 2.0769 -5.3438 39 1 6.0984 1.6495 -3.8561 40 1 5.5764 0.3715 -4.9798 41 1 4.2598 2.7182 -2.2705 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074989905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:20 Heat of formation + Delta-G solvation = 72.211781 kcal Electronic energy + Delta-G solvation = -19425.985505 eV Core-core repulsion = 16468.776593 eV Total energy + Delta-G solvation = -2957.208912 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.34576 -38.28497 -33.79387 -32.82375 -32.38747 -31.28560 -29.47587 -27.70079 -25.83372 -25.22712 -24.69600 -22.15065 -21.22302 -20.30968 -19.52659 -17.43445 -16.89500 -16.10465 -15.86097 -15.38355 -14.78387 -14.75536 -14.40424 -14.17061 -13.82082 -13.41933 -13.28756 -12.97488 -12.87357 -12.72974 -12.40404 -11.99007 -11.77579 -11.71185 -11.55875 -11.11370 -11.04830 -10.91046 -10.77402 -10.61209 -10.54103 -10.10043 -9.55914 -9.49216 -9.02917 -8.57643 -8.25305 -8.10841 -6.48548 -6.19771 -3.89355 1.75465 2.35771 2.62428 3.23426 3.24371 3.30900 3.61328 4.19792 4.26758 4.31033 4.71586 4.84542 4.90187 5.08078 5.09950 5.11660 5.16193 5.17185 5.33148 5.38924 5.45491 5.49193 5.53283 5.63459 5.66593 5.84496 5.90395 5.99642 6.03470 6.05589 6.23212 6.26486 6.44971 6.48767 6.67670 6.83663 6.84910 7.20834 7.24128 7.54434 7.63446 8.39699 9.26496 10.88427 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.034924 B = 0.002660 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.545037 B =10523.904946 C =10821.600056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.048 3.952 3 N -0.532 5.532 4 C 0.055 3.945 5 C -0.092 4.092 6 C -0.111 4.111 7 S -0.134 6.134 8 C -0.515 4.515 9 H 0.072 0.928 10 C 0.070 3.930 11 N -0.870 5.870 12 Si 0.918 3.082 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.272 1.272 16 C 0.127 3.873 17 C -0.225 4.225 18 C 0.053 3.947 19 N -0.303 5.303 20 N -0.380 5.380 21 C 0.103 3.897 22 C 0.074 3.926 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.267 0.733 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.178 0.822 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.275 0.729 -23.721 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.080 4.080 3 N -0.255 5.255 4 C -0.074 4.074 5 C -0.131 4.131 6 C -0.261 4.261 7 S 0.094 5.906 8 C -0.663 4.663 9 H 0.090 0.910 10 C -0.138 4.138 11 N -0.506 5.506 12 Si 0.744 3.256 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.197 1.197 16 C -0.002 4.002 17 C -0.236 4.236 18 C -0.133 4.133 19 N -0.125 5.125 20 N -0.163 5.163 21 C -0.039 4.039 22 C -0.073 4.073 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.195 0.805 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.159 -0.886 -24.536 24.646 hybrid contribution -2.416 2.166 1.460 3.558 sum -0.257 1.280 -23.075 23.112 Atomic orbital electron populations 1.22427 0.98580 1.02282 1.01990 1.22149 0.92590 0.90404 1.02817 1.62252 1.59592 1.02292 1.01331 1.22244 0.97643 0.97788 0.89709 1.21256 1.01227 0.99451 0.91179 1.23233 1.02259 1.01848 0.98729 1.84639 1.62610 1.47005 0.96315 1.22695 1.32103 1.19038 0.92489 0.91021 1.25016 0.95102 0.95775 0.97957 1.70030 1.32989 1.29858 1.17695 0.86177 0.78892 0.80291 0.80231 1.20311 1.20780 1.19706 1.20327 0.95820 0.97376 0.86656 1.19925 0.97144 1.04298 1.02279 1.23756 0.98514 0.97612 0.93420 1.77324 0.96646 1.14254 1.24241 1.48438 1.14433 1.29292 1.24103 1.21826 0.81029 1.03912 0.97094 1.22331 0.96627 0.98139 0.90160 0.91947 0.92730 0.92232 0.91003 0.90281 0.94426 0.91118 0.91701 0.90970 0.92232 0.92449 0.92358 0.93619 0.90620 0.80549 0.90977 0.89421 0.89444 0.80947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 9.27 37.15 0.34 -1.68 16 2 C 0.05 0.56 5.69 -3.82 -0.02 0.54 16 3 N -0.53 -6.42 4.66 -236.07 -1.10 -7.52 16 4 C 0.06 0.73 4.71 -3.82 -0.02 0.71 16 5 C -0.09 -1.53 5.14 -26.73 -0.14 -1.67 16 6 C -0.11 -2.26 5.67 37.16 0.21 -2.05 16 7 S -0.13 -3.55 21.44 -107.50 -2.30 -5.85 16 8 C -0.51 -14.90 9.50 30.94 0.29 -14.60 16 9 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 10 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 11 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 12 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 C 0.13 1.30 5.33 -4.98 -0.03 1.27 16 17 C -0.22 -2.36 4.99 -105.05 -0.52 -2.88 16 18 C 0.05 0.57 11.03 -17.36 -0.19 0.38 16 19 N -0.30 -3.63 12.58 30.62 0.39 -3.25 16 20 N -0.38 -3.79 4.01 -68.16 -0.27 -4.06 16 21 C 0.10 0.59 11.47 59.85 0.69 1.28 16 22 C 0.07 0.72 11.40 -17.22 -0.20 0.53 16 23 H 0.06 0.73 6.25 -51.93 -0.32 0.40 16 24 H 0.05 0.51 6.30 -51.93 -0.33 0.19 16 25 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.07 0.82 6.62 -51.93 -0.34 0.48 16 27 H 0.08 1.02 6.48 -51.93 -0.34 0.69 16 28 H 0.04 0.49 5.99 -51.93 -0.31 0.18 16 29 H 0.07 0.90 7.87 -51.93 -0.41 0.50 16 30 H 0.06 1.10 6.56 -51.93 -0.34 0.76 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.20 8.14 -51.91 -0.42 0.77 16 33 H 0.06 1.15 8.14 -51.91 -0.42 0.73 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.05 0.44 5.95 -51.93 -0.31 0.14 16 36 H 0.08 0.73 7.82 -51.93 -0.41 0.32 16 37 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 345.52 15.07 5.21 5.21 Total: -1.00 -33.42 345.52 -8.51 -41.93 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -6.46 Total: -1.36 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 0.32 Total: -16.25 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: -0.25 Total: -40.32 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.30 Total: -5.85 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.42 -8.51 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074989905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.140 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds