Wall clock time and date at job start Tue Mar 31 2020 06:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.34957 * 126.03329 * 124.97448 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03591 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47558 * 269.97614 * 6 5 4 8 8 C 1.46900 * 111.00023 * 293.95500 * 7 6 5 9 9 C 1.46897 * 111.00074 * 170.00111 * 7 6 5 10 10 C 1.53001 * 109.46854 * 190.00320 * 9 7 6 11 11 C 1.53005 * 109.47150 * 180.02562 * 10 9 7 12 12 S 1.80998 * 109.47280 * 179.97438 * 11 10 9 13 13 C 1.76193 * 99.99925 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00448 * 359.97438 * 13 12 11 15 15 C 1.38801 * 120.00034 * 179.97438 * 13 12 11 16 16 N 1.31634 * 119.99959 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00426 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47137 * 89.99831 * 17 15 13 19 19 H 1.48499 * 109.47441 * 210.00052 * 17 15 13 20 20 H 1.48500 * 109.47054 * 330.00251 * 17 15 13 21 21 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 22 22 N 1.30844 * 108.19764 * 359.97438 * 21 5 4 23 23 H 1.08999 * 109.47317 * 59.99347 * 1 2 3 24 24 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46871 * 299.99950 * 1 2 3 26 26 H 1.09001 * 109.46871 * 240.00049 * 2 1 3 27 27 H 1.08999 * 109.47317 * 120.00653 * 2 1 3 28 28 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 29 29 H 1.09002 * 109.46861 * 29.97707 * 6 5 4 30 30 H 1.09005 * 109.47196 * 149.97635 * 6 5 4 31 31 H 1.09009 * 109.46985 * 59.99497 * 8 7 6 32 32 H 1.08994 * 109.47451 * 179.97438 * 8 7 6 33 33 H 1.09001 * 109.47131 * 300.00411 * 8 7 6 34 34 H 1.08999 * 109.47292 * 309.99695 * 9 7 6 35 35 H 1.08998 * 109.47344 * 70.00070 * 9 7 6 36 36 H 1.09005 * 109.47202 * 299.99329 * 10 9 7 37 37 H 1.09002 * 109.47811 * 59.99572 * 10 9 7 38 38 H 1.09005 * 109.46291 * 299.99606 * 11 10 9 39 39 H 1.08998 * 109.47425 * 59.99519 * 11 10 9 40 40 H 0.97001 * 120.00253 * 179.97438 * 16 15 13 41 41 H 1.07995 * 125.89923 * 180.25722 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0720 3.2134 0.5459 6 6 3.9556 4.1995 1.2656 7 7 3.1730 4.8993 2.2931 8 6 2.1353 5.7408 1.6824 9 6 4.0451 5.6921 3.1700 10 6 3.2385 6.2011 4.3663 11 6 4.1466 7.0274 5.2793 12 16 3.1922 7.6302 6.6942 13 6 4.4469 8.5211 7.5523 14 1 5.4498 8.5609 7.1536 15 6 4.1465 9.1717 8.7410 16 7 2.9243 9.1228 9.2274 17 14 5.4768 10.1157 9.6513 18 1 5.4990 11.5223 9.1759 19 1 5.1929 10.0901 11.1087 20 1 6.7962 9.4850 9.3929 21 6 2.3129 3.4723 -0.6000 22 7 1.6811 2.3745 -0.9282 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.3184 1.4127 1.7364 29 1 4.7828 3.6692 1.7373 30 1 4.3482 4.9239 0.5519 31 1 1.4618 5.1175 1.0941 32 1 1.5706 6.2470 2.4652 33 1 2.6033 6.4819 1.0344 34 1 4.8668 5.0697 3.5242 35 1 4.4451 6.5401 2.6141 36 1 2.4167 6.8236 4.0121 37 1 2.8384 5.3531 4.9222 38 1 4.9686 6.4052 5.6335 39 1 4.5462 7.8755 4.7233 40 1 2.7144 9.5772 10.0583 41 1 2.2612 4.4141 -1.1259 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074990958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:32 Heat of formation + Delta-G solvation = 67.246662 kcal Electronic energy + Delta-G solvation = -19071.850159 eV Core-core repulsion = 16114.425944 eV Total energy + Delta-G solvation = -2957.424216 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.38380 -37.70930 -34.77972 -32.95822 -32.38729 -30.71954 -29.97461 -27.11036 -26.18381 -25.41252 -24.08132 -22.53645 -20.87555 -20.45650 -20.08679 -17.43997 -17.13050 -15.92040 -15.50854 -15.38313 -14.82821 -14.77395 -14.43279 -14.16696 -14.01448 -13.84156 -13.07479 -13.02871 -12.80919 -12.45412 -12.39128 -12.05593 -11.82291 -11.78731 -11.62609 -11.38489 -11.19556 -11.04273 -10.77177 -10.62486 -10.53949 -10.19821 -9.56386 -9.49524 -9.02749 -8.61052 -8.25551 -8.15830 -6.48567 -6.19560 -3.89284 1.75197 2.31235 2.61468 3.23633 3.24541 3.31106 3.61148 4.16803 4.22235 4.27392 4.58129 4.66837 4.79020 4.83231 5.08400 5.14523 5.16194 5.25090 5.29389 5.34899 5.40830 5.47905 5.59649 5.61210 5.66119 5.74956 5.80774 5.84529 5.96938 6.04788 6.06955 6.17273 6.42617 6.49352 6.66673 6.82594 6.85290 7.16788 7.21444 7.55013 7.63632 8.39880 9.26605 10.88613 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.039302 B = 0.002380 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.263514 B =11764.275327 C =12005.443262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.132 3.868 3 N -0.376 5.376 4 C 0.073 3.927 5 C -0.227 4.227 6 C 0.132 3.868 7 N -0.538 5.538 8 C 0.023 3.977 9 C 0.060 3.940 10 C -0.093 4.093 11 C -0.112 4.112 12 S -0.134 6.134 13 C -0.515 4.515 14 H 0.072 0.928 15 C 0.070 3.930 16 N -0.870 5.870 17 Si 0.918 3.082 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.053 3.947 22 N -0.299 5.299 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.173 0.827 29 H 0.077 0.923 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.022 0.978 34 H 0.072 0.928 35 H 0.031 0.969 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.267 0.733 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.699 -16.463 -19.368 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.011 3.989 3 N -0.158 5.158 4 C -0.074 4.074 5 C -0.239 4.239 6 C 0.003 3.997 7 N -0.262 5.262 8 C -0.126 4.126 9 C -0.069 4.069 10 C -0.132 4.132 11 C -0.261 4.261 12 S 0.094 5.906 13 C -0.663 4.663 14 H 0.090 0.910 15 C -0.139 4.139 16 N -0.506 5.506 17 Si 0.745 3.255 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.134 4.134 22 N -0.120 5.120 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.190 0.810 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.041 0.959 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.007 -17.623 -19.481 26.441 hybrid contribution 3.042 1.804 0.453 3.565 sum 0.035 -15.820 -19.028 24.745 Atomic orbital electron populations 1.22054 0.93788 1.02782 1.03718 1.21656 0.96137 0.77578 1.03576 1.48646 1.35726 1.10105 1.21372 1.22338 0.94890 0.94759 0.95375 1.19912 1.08653 0.94876 1.00482 1.20287 0.93417 0.93933 0.92013 1.62017 1.14411 1.29996 1.19770 1.22432 0.95383 0.95708 0.99032 1.22190 0.95273 0.95550 0.93918 1.21281 0.97822 0.99563 0.94544 1.23235 1.01495 1.00901 1.00476 1.84637 1.18343 1.66213 1.21377 1.22694 0.96771 1.36766 1.10098 0.91001 1.25020 0.96232 0.96152 0.96471 1.70028 1.18543 1.41557 1.20442 0.86170 0.81009 0.79804 0.78564 1.20313 1.20783 1.19705 1.23762 0.95840 0.97276 0.96485 1.77281 1.23756 0.97024 1.13955 0.91176 0.90791 0.91888 0.90031 0.88670 0.81019 0.90450 0.94309 0.91590 0.90925 0.95947 0.90967 0.95027 0.91678 0.90888 0.92185 0.92399 0.92354 0.80564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 10.10 37.16 0.38 -0.66 16 2 C 0.13 0.82 7.23 -4.04 -0.03 0.79 16 3 N -0.38 -3.68 3.68 -61.37 -0.23 -3.91 16 4 C 0.07 0.70 11.36 -17.22 -0.20 0.51 16 5 C -0.23 -2.40 4.95 -105.05 -0.52 -2.92 16 6 C 0.13 1.39 5.45 -4.98 -0.03 1.36 16 7 N -0.54 -6.73 4.75 -244.37 -1.16 -7.90 16 8 C 0.02 0.27 9.09 60.06 0.55 0.82 16 9 C 0.06 0.81 4.96 -3.82 -0.02 0.79 16 10 C -0.09 -1.57 5.15 -26.73 -0.14 -1.70 16 11 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 12 S -0.13 -3.56 21.44 -107.50 -2.30 -5.87 16 13 C -0.51 -14.94 9.50 30.94 0.29 -14.64 16 14 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 15 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 16 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 17 Si 0.92 21.71 29.55 -169.99 -5.02 16.68 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 21 C 0.05 0.57 10.62 -17.36 -0.18 0.38 16 22 N -0.30 -3.52 12.42 30.62 0.38 -3.13 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.10 0.38 8.07 -51.93 -0.42 -0.04 16 28 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 30 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.07 0.77 6.32 -51.92 -0.33 0.44 16 32 H 0.07 0.94 6.30 -51.93 -0.33 0.62 16 33 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.94 7.93 -51.93 -0.41 0.52 16 35 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 36 H 0.06 1.11 6.47 -51.93 -0.34 0.77 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.06 1.21 8.14 -51.91 -0.42 0.79 16 39 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.18 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -33.31 352.58 -8.92 -42.23 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.85 Total: -2.47 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: 0.22 Total: -15.43 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: -0.27 Total: -40.46 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -2.30 Total: -5.87 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.31 -8.92 -42.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.478 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds