Wall clock time and date at job start Tue Mar 31 2020 06:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47183 * 2 1 4 4 C 1.34957 * 126.03329 * 124.97448 * 3 2 1 5 5 C 1.35317 * 107.74055 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03591 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47558 * 269.97614 * 6 5 4 8 8 C 1.46900 * 111.00023 * 293.95500 * 7 6 5 9 9 C 1.46897 * 111.00074 * 170.00111 * 7 6 5 10 10 C 1.53001 * 109.46854 * 190.00320 * 9 7 6 11 11 C 1.53005 * 109.47150 * 180.02562 * 10 9 7 12 12 S 1.80998 * 109.47280 * 179.97438 * 11 10 9 13 13 C 1.76193 * 99.99925 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00448 * 359.97438 * 13 12 11 15 15 C 1.38801 * 120.00034 * 179.97438 * 13 12 11 16 16 N 1.31634 * 119.99959 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00426 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47137 * 89.99831 * 17 15 13 19 19 H 1.48499 * 109.47441 * 210.00052 * 17 15 13 20 20 H 1.48500 * 109.47054 * 330.00251 * 17 15 13 21 21 C 1.39868 * 107.92640 * 0.02562 * 5 4 3 22 22 N 1.30844 * 108.19764 * 359.97438 * 21 5 4 23 23 H 1.08999 * 109.47317 * 59.99347 * 1 2 3 24 24 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46871 * 299.99950 * 1 2 3 26 26 H 1.09001 * 109.46871 * 240.00049 * 2 1 3 27 27 H 1.08999 * 109.47317 * 120.00653 * 2 1 3 28 28 H 1.07995 * 126.12756 * 0.02562 * 4 3 2 29 29 H 1.09002 * 109.46861 * 29.97707 * 6 5 4 30 30 H 1.09005 * 109.47196 * 149.97635 * 6 5 4 31 31 H 1.09009 * 109.46985 * 59.99497 * 8 7 6 32 32 H 1.08994 * 109.47451 * 179.97438 * 8 7 6 33 33 H 1.09001 * 109.47131 * 300.00411 * 8 7 6 34 34 H 1.08999 * 109.47292 * 309.99695 * 9 7 6 35 35 H 1.08998 * 109.47344 * 70.00070 * 9 7 6 36 36 H 1.09005 * 109.47202 * 299.99329 * 10 9 7 37 37 H 1.09002 * 109.47811 * 59.99572 * 10 9 7 38 38 H 1.09005 * 109.46291 * 299.99606 * 11 10 9 39 39 H 1.08998 * 109.47425 * 59.99519 * 11 10 9 40 40 H 0.97001 * 120.00253 * 179.97438 * 16 15 13 41 41 H 1.07995 * 125.89923 * 180.25722 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0720 3.2134 0.5459 6 6 3.9556 4.1995 1.2656 7 7 3.1730 4.8993 2.2931 8 6 2.1353 5.7408 1.6824 9 6 4.0451 5.6921 3.1700 10 6 3.2385 6.2011 4.3663 11 6 4.1466 7.0274 5.2793 12 16 3.1922 7.6302 6.6942 13 6 4.4469 8.5211 7.5523 14 1 5.4498 8.5609 7.1536 15 6 4.1465 9.1717 8.7410 16 7 2.9243 9.1228 9.2274 17 14 5.4768 10.1157 9.6513 18 1 5.4990 11.5223 9.1759 19 1 5.1929 10.0901 11.1087 20 1 6.7962 9.4850 9.3929 21 6 2.3129 3.4723 -0.6000 22 7 1.6811 2.3745 -0.9282 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.3184 1.4127 1.7364 29 1 4.7828 3.6692 1.7373 30 1 4.3482 4.9239 0.5519 31 1 1.4618 5.1175 1.0941 32 1 1.5706 6.2470 2.4652 33 1 2.6033 6.4819 1.0344 34 1 4.8668 5.0697 3.5242 35 1 4.4451 6.5401 2.6141 36 1 2.4167 6.8236 4.0121 37 1 2.8384 5.3531 4.9222 38 1 4.9686 6.4052 5.6335 39 1 4.5462 7.8755 4.7233 40 1 2.7144 9.5772 10.0583 41 1 2.2612 4.4141 -1.1259 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074990958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:32 Heat of formation + Delta-G solvation = 46.319352 kcal Electronic energy + Delta-G solvation = -19072.757636 eV Core-core repulsion = 16114.425944 eV Total energy + Delta-G solvation = -2958.331692 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.11478 -38.71343 -35.45308 -34.60218 -34.14821 -31.54099 -30.71551 -28.17064 -27.80931 -26.96433 -24.77218 -23.64265 -21.76667 -21.48065 -20.84452 -19.53485 -17.80631 -16.89993 -16.88022 -16.61543 -16.26775 -15.87984 -15.55664 -15.30047 -15.13469 -14.75231 -14.49910 -13.88043 -13.77508 -13.48052 -13.33464 -13.07296 -13.02141 -12.97086 -12.89470 -12.69288 -12.50001 -12.38629 -12.24605 -12.17158 -11.56087 -11.43803 -11.24344 -11.12240 -10.30633 -10.28417 -9.40909 -9.07828 -8.64817 -8.35650 -6.11842 1.02430 1.32612 1.40574 1.49996 1.69352 1.75317 1.86474 2.30475 2.98359 3.21051 3.37424 3.61225 4.01506 4.03996 4.11384 4.17181 4.24824 4.28865 4.38902 4.42040 4.47674 4.53671 4.64100 4.72278 4.77380 4.80583 4.83008 4.86605 4.90567 5.01400 5.11739 5.23496 5.25648 5.28951 5.38672 5.41356 5.75000 6.17063 6.19849 6.22465 6.25429 6.80207 7.06356 8.73776 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.039302 B = 0.002380 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.263514 B =11764.275327 C =12005.443262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.123 3.877 3 N -0.378 5.378 4 C 0.073 3.927 5 C -0.243 4.243 6 C 0.137 3.863 7 N -0.546 5.546 8 C 0.026 3.974 9 C 0.071 3.929 10 C -0.082 4.082 11 C -0.086 4.086 12 S -0.203 6.203 13 C -0.536 4.536 14 H 0.073 0.927 15 C 0.013 3.987 16 N -0.908 5.908 17 Si 0.995 3.005 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.262 1.262 21 C 0.045 3.955 22 N -0.332 5.332 23 H 0.049 0.951 24 H 0.098 0.902 25 H 0.047 0.953 26 H 0.092 0.908 27 H 0.123 0.877 28 H 0.197 0.803 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.031 0.969 34 H 0.084 0.916 35 H 0.037 0.963 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.271 0.729 41 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.936 -17.275 -19.777 26.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.003 3.997 3 N -0.160 5.160 4 C -0.074 4.074 5 C -0.255 4.255 6 C 0.009 3.991 7 N -0.271 5.271 8 C -0.122 4.122 9 C -0.058 4.058 10 C -0.121 4.121 11 C -0.235 4.235 12 S 0.025 5.975 13 C -0.684 4.684 14 H 0.092 0.908 15 C -0.192 4.192 16 N -0.545 5.545 17 Si 0.817 3.183 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.186 1.186 21 C -0.141 4.141 22 N -0.154 5.154 23 H 0.068 0.932 24 H 0.117 0.883 25 H 0.067 0.933 26 H 0.110 0.890 27 H 0.141 0.859 28 H 0.214 0.786 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.383 -18.453 -19.914 27.185 hybrid contribution 2.483 1.955 0.500 3.200 sum 1.100 -16.497 -19.414 25.501 Atomic orbital electron populations 1.22008 0.94001 1.03848 1.01944 1.21997 0.95991 0.76267 1.05458 1.48959 1.35429 1.10842 1.20816 1.22786 0.94285 0.94745 0.95598 1.20003 1.09335 0.95432 1.00762 1.20283 0.93356 0.93889 0.91564 1.61973 1.14606 1.29806 1.20683 1.22371 0.95348 0.95848 0.98620 1.21997 0.94933 0.96130 0.92774 1.21164 0.97385 0.98484 0.95040 1.23154 1.01152 1.01228 0.97961 1.84683 1.20966 1.66845 1.24963 1.23040 0.97072 1.37385 1.10897 0.90842 1.26099 0.98814 0.96977 0.97295 1.70166 1.20797 1.42496 1.21029 0.84998 0.77856 0.78304 0.77134 1.19321 1.19961 1.18611 1.24029 0.95648 0.97606 0.96779 1.77227 1.24861 0.97915 1.15362 0.93152 0.88320 0.93332 0.89006 0.85920 0.78606 0.89317 0.93733 0.91399 0.92373 0.95055 0.89771 0.94463 0.92266 0.91825 0.91678 0.92059 0.92014 0.79478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 10.10 71.98 0.73 -1.11 16 2 C 0.12 1.31 7.23 86.38 0.62 1.93 16 3 N -0.38 -6.88 3.68 -348.07 -1.28 -8.16 16 4 C 0.07 1.27 11.36 83.54 0.95 2.22 16 5 C -0.24 -4.75 4.95 -20.14 -0.10 -4.85 16 6 C 0.14 2.57 5.45 85.56 0.47 3.04 16 7 N -0.55 -12.71 4.75 -927.04 -4.41 -17.12 16 8 C 0.03 0.61 9.09 127.69 1.16 1.77 16 9 C 0.07 1.79 4.96 86.30 0.43 2.22 16 10 C -0.08 -2.68 5.15 30.60 0.16 -2.52 16 11 C -0.09 -3.45 5.67 71.98 0.41 -3.04 16 12 S -0.20 -11.00 21.44 -56.49 -1.21 -12.21 16 13 C -0.54 -31.27 9.50 67.95 0.65 -30.62 16 14 H 0.07 4.11 7.80 -2.91 -0.02 4.08 16 15 C 0.01 0.74 5.49 84.86 0.47 1.20 16 16 N -0.91 -55.46 13.22 21.65 0.29 -55.17 16 17 Si 1.00 44.18 29.55 68.60 2.03 46.21 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 20 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 21 C 0.05 0.93 10.62 85.23 0.91 1.84 16 22 N -0.33 -7.62 12.42 -57.02 -0.71 -8.33 16 23 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 27 H 0.12 0.62 8.07 -2.39 -0.02 0.60 16 28 H 0.20 2.25 8.06 -2.91 -0.02 2.22 16 29 H 0.09 1.46 7.93 -2.39 -0.02 1.44 16 30 H 0.04 0.79 8.12 -2.38 -0.02 0.77 16 31 H 0.07 1.53 6.32 -2.38 -0.02 1.52 16 32 H 0.06 1.49 6.30 -2.39 -0.02 1.48 16 33 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 1.94 7.93 -2.39 -0.02 1.93 16 35 H 0.04 0.91 8.12 -2.39 -0.02 0.89 16 36 H 0.06 2.01 6.47 -2.38 -0.02 2.00 16 37 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.06 2.42 8.14 -2.40 -0.02 2.41 16 40 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.19 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -72.20 352.58 2.53 -69.67 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.98 Total: 13.04 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 6.84 Total: -27.92 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -6.11 Total: -88.79 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -11.00 SS G_CDS: -1.21 Total: -12.21 kcal Total: -72.20 2.53 -69.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.992 kcal (2) G-P(sol) polarization free energy of solvation -72.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds